MELO.jh101410.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh101410.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr04: 4745218 .. 4748499 (+)
RNA-Seq Expression	MELO.jh101410.1
Synteny	MELO.jh101410.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATCAGAGCTTTAACCGAGATCTACTGTTCAGACGCCGTTGTTGCTCTTCTCGTTGTGAATCTCACCGACGATGAGCTCAGCACCTATGACCAGATCCATCTGCAGGTCCCAAATTCATCCAACCTGAAGTCGACCTAGGTCCCGTCCGTGGTGAACCTAACGTGAAGCCTCCTTGTTTCCTCATTTCCTCGTCTGCTGCACTCTTCGGTCTCTAATCTCAGTTCTCTATTCTCCTATCTTAGTCTTTCGCTCTCCGATCTTAGTTCTCTGTTCTCCGATCTCCGTGAAACCTAGCTGTGATCTCAATTCTCTCTTCTCTGTTTGCGACAGCCATGATCTCTGTTTCGTGGCCCTGTTACTCATCGCCACTGCTCTTTGAGTTTTTTTTTCCTTGTGCAGATCTACTGCTCAGATCTGTTGCCCAATCTTTGTTATTTAAAGTTTCCCTCTAGATCTGTGTTTGTGCTTTGTTTATGTGATAGCTGACTTGTTTTTTTCATTGTGAGTAGATGGAGAAAAGTGAAATTGCTCGTCCAATTAGCATGATTCTTGATGGCTCTAATTATATTACATGGACAAATCAAATTAAAAGCTTTCTAATTGGACGAAAATTATGGCGTATTGTCTCCGGTGATATTACCAAACCAACCAAACAAGACCTAAGATGATAGCAAATTTATCGAACGCCTCGAAGAATGGGATAGCAAAAATCATCAAATTATCACCTGACTTAGTAACACATCAATCCCTGCTATCAATATACAATTTGATGCTTTTGAAAATGCTAAGGAATTATGAGAATTTTTGTCTACACGATTTAAATCTGTCAGATTAGCTCATTACTATCAGTTGCATAATAGCCTTGTCAATCTCAATCAAGAAGTTGGTCAATCTGTTAATGAACATCTAGCAGTGCTTCAACCTATCTGGACTCAACTTAATCAAGCTAAAATCAGTAAAGATCTTCGTCTTATTAAAGTCTTTATGTGATTATGTCCAGAATATGAATCTGTTAAGACTGCCTTACTACACCACAATCTCTTGCCCTTATTGGATGCAGTCATCCAAGAGATATTATTTGAAGAAAAACGTCTTGGCATCAATCTCTCCAAACATTCTGATGTTTTTCTTGTAGACATTCATTCATCATCTAGAGAATCAAGCACATTTTATAAGAATTGGTCACAAATTTATTGATTGTCTTAAAATAGAATGGAGATACTACCATAAACCATATCATATTTTGGGTAATTGTCCTATAAAATCATCTCGACCTCGAAGCTATTCTACAAGAGGAAAGAACTTTACTAAATCTGATACCTCATCTGTTGTTGCTGCTGCATCAGATAATTCCACCTTCCCCTATTTTCAAATAAGTAATCTTTAGAGCCTATTAAATCAGTTAATTTCATCATTTTCCTCTGCACTTGCTGTCTCACCAGGTAATCAATGACTTCTTGACTTTACCTGTTGCAATCATATGACATCTAATTATTCTCTTATGAACACTCCTAGTCCTGCTAAATCTTTACCTCCCATTTATGCTGCTGATGGCAATTGTATGAACATATCTCATATTGGCACCATTAATACCCCCAGTTTGAGTCTTTCTCATGCTTACTATGTCCCAAACTTAACCTTTAATCTAGTGTCTGTTGGTCAACTATGTGATCTTGGCTTAACTGTTTCTTTTTCTCTCAATGGTTGTCAGGTTCAGGATCCATAGACGAAAAGACGATTGGGACGGATCATAAAGTGGGAAGATTGTTTGAGCTCCTATCACTTCAAGTTCCTCCTCCTTCATCCATCTCTGCTCCTGTCACTGACTCTGATACATATCAGTGGCATCTTCATCTTGGTCATGCTTCTCTTGAAAAACTTCATCATTTAATTTACGTTAACAATTTAAATAATGTTACCAAGTTTGTCCTTTTAATTGTTTAAATTGCAAACTTGCTAAGCAACCTGCTTTGTCTTTTTCTCAATCCACTTCTATATGTGATAAACCTTTTGATTTAATTCATTCTGACATTTAGGGTCCTGCCCCTACTACCATTGTTCATGGTTATCGCTATTATATTTTGTTCATTGACGATTTCTCTTGATTTACATGGATTTATTTTCTCAAGCACCGCTCTAAATTATCTCGCACTTATATTGAGTTTACTAATATGTTCAAACTCAATTCTCTTGTCCTATCAAAACCTTTCGCACTGATAATACATTGGAGTATAAAGACTTCACTCGTCTATCTTTTCTCTTCCAACAAAGCACTCTTGTTCCGCACTCTTGCCCCCGCACCTCTTAACAAAATAGGTGTGTTGAGCACAAACTTCGCCACATTCTTGACTCAGTACGTGTCCTCCTTCTTTCTACTTCATATCGTGAGAAATTTTAGGATGAAGCAGCTCTTACATCCGTGTATATTATCAATCGTGTTCCTTCCTTTGTTCTTCAGAATATCTCTCCATTCGAAAGACTATATGATACTCCTCCCAACTACTCTAACCTTAAAGTCTTTGGTTGTGCTTGCTTTGTTCTCCTACATCCTCATGAGCACACTAAACTTAAACCACGTGCCGACCTCTGTTTTCTTGGCTATGACACAGAACATAAAGGTTTCCATTGTTGGGATCCTCTTTCCAATAAACTTCGTATATTTCACCATGTCACATTTTAGGAGCACACTATGTTCTCTCGCTTGTCCTCCTTCTACTCCTTCTTCTCTAGTCTTCAACCTTTCTTCACCAATAAATCTATTGAACTTTTTCCTCTCTCTGAGTCCACTTCTGATACCGAGCTTACTCAATCTGTACCTACTTCTGCAAACTCAAACCAATCATCCGTCTCCGATGATGGTCATGAACCTACTTCAACACCCTTCTTCGTCGTTCTACTTGAGTAAGGAAACCTCTCATCCATCTCCAAGATTATCACTATTTTTTCACTATTGTTTTCCTTGTTGAACCTACCTTTTATCAAGAGGCTAGTACTGACCCTTTATGGCAGAAAACAATGAGTGATGAATTACAAGCTCTTGAAAAGATGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGACTACAAGTGGATCTACAAAATCAAGACTCACTCTGATGGTATTATTGAGTGTTATAAAACTTGTCTTGTTGCAAAAGGATATTCGCAAGAATATGGTATTGACTATGAAGAAATATTTGCTCATGTGGCTCGGATGACGTCTATTCGAAGTCTGTTAGCTGTTGTTGCTGCCAAGCAATGA

mRNA sequence

ATGGGTATCAGAGCTTTAACCGAGATCTACTGTTCAGACGCCGTTGTTGCTCTTCTCGTTGTGAATCTCACCGACGATGAGCTCAGCACCTATGACCAGATCCATCTGCAGATGGAGAAAAGTGAAATTGCTCGTCCAATTAGCATGATTCTTGATGGCTCTAATTATATTACATGGACAAATCAAATTAAAAGCTTTCTAATTGGACGAAAATTATGGCGTATTGTCTCCGGTTCAGGATCCATAGACGAAAAGACGATTGGGACGGATCATAAAGTGGGAAGATTGTTTGAGCTCCTATCACTTCAAGTTCCTCCTCCTTCATCCATCTCTGCTCCTGTCACTGACTCTGATACATATCAGTGGCATCTTCATCTTGAGGCTAGTACTGACCCTTTATGGCAGAAAACAATGAGTGATGAATTACAAGCTCTTGAAAAGATGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGACTACAAGTGGATCTACAAAATCAAGACTCACTCTGATGGTATTATTGAGTGTTATAAAACTTGTCTTGTTGCAAAAGGATATTCGCAAGAATATGGTATTGACTATGAAGAAATATTTGCTCATGTGGCTCGGATGACGTCTATTCGAAGTCTGTTAGCTGTTGTTGCTGCCAAGCAATGA

Coding sequence (CDS)

ATGGGTATCAGAGCTTTAACCGAGATCTACTGTTCAGACGCCGTTGTTGCTCTTCTCGTTGTGAATCTCACCGACGATGAGCTCAGCACCTATGACCAGATCCATCTGCAGATGGAGAAAAGTGAAATTGCTCGTCCAATTAGCATGATTCTTGATGGCTCTAATTATATTACATGGACAAATCAAATTAAAAGCTTTCTAATTGGACGAAAATTATGGCGTATTGTCTCCGGTTCAGGATCCATAGACGAAAAGACGATTGGGACGGATCATAAAGTGGGAAGATTGTTTGAGCTCCTATCACTTCAAGTTCCTCCTCCTTCATCCATCTCTGCTCCTGTCACTGACTCTGATACATATCAGTGGCATCTTCATCTTGAGGCTAGTACTGACCCTTTATGGCAGAAAACAATGAGTGATGAATTACAAGCTCTTGAAAAGATGCACACTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACCCATTGACTACAAGTGGATCTACAAAATCAAGACTCACTCTGATGGTATTATTGAGTGTTATAAAACTTGTCTTGTTGCAAAAGGATATTCGCAAGAATATGGTATTGACTATGAAGAAATATTTGCTCATGTGGCTCGGATGACGTCTATTCGAAGTCTGTTAGCTGTTGTTGCTGCCAAGCAATGA

Protein sequence

MGIRALTEIYCSDAVVALLVVNLTDDELSTYDQIHLQMEKSEIARPISMILDGSNYITWTNQIKSFLIGRKLWRIVSGSGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHLEASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCLVAKGYSQEYGIDYEEIFAHVARMTSIRSLLAVVAAKQ

Homology

[Close]

BLAST of MELO.jh101410.1 vs. NCBI nr
Match: KAA0041561.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (564), Expect = 1.86e-64
Identity = 134/289 (46.37%), Postives = 134/289 (46.37%), Query Frame = 0


Query: 79  SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHLEA---------- 138
           SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHL            
Sbjct: 28  SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHLALLFRTLAPTPL 87

Query: 139 ------------------------------------------------------------ 198
                                                                       
Sbjct: 88  NKIGVLSTNFATFLTQISLHSKDYMILLPTTLTLKSLVVLALFSYILMSTLNLNHVPTSV 147

Query: 199 ------------------------------------------------------------ 215
                                                                       
Sbjct: 148 FLAMTQNIKEHTMFSRLSSFYSFFSSLQPFFTNKSIELFPLSESTSDTELTQSVPTSANS 207

[Close]

BLAST of MELO.jh101410.1 vs. NCBI nr
Match: TYK19695.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (564), Expect = 2.60e-64
Identity = 134/289 (46.37%), Postives = 134/289 (46.37%), Query Frame = 0


Query: 79  SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHLEA---------- 138
           SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHL            
Sbjct: 28  SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHLALLFRTLAPTPL 87

Query: 139 ------------------------------------------------------------ 198
                                                                       
Sbjct: 88  NKIGVLSTNFATFLTQISLHSKDYMILLPTTLTLKSLVVLALFSYILMSTLNLNHVPTSV 147

Query: 199 ------------------------------------------------------------ 215
                                                                       
Sbjct: 148 FLAMTQNIKEHTMFSRLSSFYSFFSSLQPFFTNKSIELFPLSESTSDTELTQSVPTSANS 207

[Close]

BLAST of MELO.jh101410.1 vs. NCBI nr
Match: KAA0045086.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96241.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (420), Expect = 5.16e-48
Identity = 80/96 (83.33%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 127 EASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCL 186
           EASTDPLWQK M+DELQALEK HTWDYVDLP GKR I  KWIYKIKTHSDG IECYKT L
Sbjct: 88  EASTDPLWQKAMNDELQALEKTHTWDYVDLPSGKRSIGCKWIYKIKTHSDGTIECYKTRL 147

Query: 187 VAKGYSQEYGIDYEEIFAHVARMTSIRSLLAVVAAK 222
           VAKGY Q+YGIDYEE FAHVAR+TS+RSLL V AAK
Sbjct: 148 VAKGYFQKYGIDYEETFAHVARITSVRSLLVVAAAK 183

[Close]

BLAST of MELO.jh101410.1 vs. NCBI nr
Match: KAA0051195.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (450), Expect = 3.67e-47
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 127 EASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCL 186
           EASTDPLWQK M+DELQALEK HTWDYVDLPPGKRPI +KWIYKIKTHSDG I+CYK  L
Sbjct: 608 EASTDPLWQKVMNDELQALEKTHTWDYVDLPPGKRPIGWKWIYKIKTHSDGTIKCYKARL 667

Query: 187 VAKGYSQEYGIDYEEIFAHVARMTSIRSLLAVVAAKQ 223
           VAKGYSQEYGIDY+E FAHVARMTS+RSLLAV AAKQ
Sbjct: 668 VAKGYSQEYGIDYKETFAHVARMTSVRSLLAVAAAKQ 704

[Close]

BLAST of MELO.jh101410.1 vs. NCBI nr
Match: KAA0043165.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK12300.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 5.19e-47
Identity = 82/97 (84.54%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 127 EASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCL 186
           +ASTDPLWQK M+DELQALEK HTWDYVDLPP KRPID KWIYKIKTHSDG IECYK  L
Sbjct: 91  KASTDPLWQKAMNDELQALEKTHTWDYVDLPPSKRPIDCKWIYKIKTHSDGTIECYKARL 150

Query: 187 VAKGYSQEYGIDYEEIFAHVARMTSIRSLLAVVAAKQ 223
           VAKGYSQEYGIDYEE FA VARM S+RSLLAV A KQ
Sbjct: 151 VAKGYSQEYGIDYEETFAPVARMMSVRSLLAVAAVKQ 187

[Close]

BLAST of MELO.jh101410.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-16
Identity = 39/86 (45.35%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 136 KTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCLVAKGYSQEY 195
           K M +E+++L+K  T+  V+LP GKRP+  KW++K+K   D  +  YK  LV KG+ Q+ 
Sbjct: 828 KAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKK 887

Query: 196 GIDYEEIFAHVARMTSIRSLLAVVAA 222
           GID++EIF+ V +MTSIR++L++ A+
Sbjct: 888 GIDFDEIFSPVVKMTSIRTILSLAAS 913

[Close]

BLAST of MELO.jh101410.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 126  LEASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPI-DYKWIYKIKTHSDGIIECYKT 185
            ++A  D  W++ M  E+ A    HTWD V  PP    I   +WI+  K +SDG +  YK 
Sbjct: 943  IQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKA 1002

Query: 186  CLVAKGYSQEYGIDYEEIFAHVARMTSIRSLLAV 219
             LVAKGY+Q  G+DY E F+ V + TSIR +L V
Sbjct: 1003 RLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGV 1036

[Close]

BLAST of MELO.jh101410.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-13
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 126  LEASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPI-DYKWIYKIKTHSDGIIECYKT 185
            ++A  D  W+  M  E+ A    HTWD V  PP    I   +WI+  K +SDG +  YK 
Sbjct: 960  IQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKA 1019

Query: 186  CLVAKGYSQEYGIDYEEIFAHVARMTSIRSLLAV 219
             LVAKGY+Q  G+DY E F+ V + TSIR +L V
Sbjct: 1020 RLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGV 1053

[Close]

BLAST of MELO.jh101410.1 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.0e-13
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 128 ASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCLV 187
           A  DP W + M +EL AL +  TW  V  P  +  +  KW++K K HSDG ++  K  LV
Sbjct: 34  ALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLV 93

Query: 188 AKGYSQEYGIDYEEIFAHVARMTSIRSLLAV 219
           AKG+ QE GI + E ++ V R  +IR++L V
Sbjct: 94  AKGFHQEEGIYFVETYSPVVRTATIRTILNV 124

[Close]

BLAST of MELO.jh101410.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-12
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 134 WQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCLVAKGYSQ 193
           W++ ++ EL A +  +TW     P  K  +D +W++ +K +  G    YK  LVA+G++Q
Sbjct: 906 WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 194 EYGIDYEEIFAHVARMTSIRSLLAVV 220
           +Y IDYEE FA VAR++S R +L++V
Sbjct: 966 KYQIDYEETFAPVARISSFRFILSLV 991

[Close]

BLAST of MELO.jh101410.1 vs. ExPASy TrEMBL
Match: A0A5A7TIV1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00190 PE=4 SV=1)

HSP 1 Score: 221 bits (564), Expect = 8.99e-65
Identity = 134/289 (46.37%), Postives = 134/289 (46.37%), Query Frame = 0


Query: 79  SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHLEA---------- 138
           SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHL            
Sbjct: 28  SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHLALLFRTLAPTPL 87

Query: 139 ------------------------------------------------------------ 198
                                                                       
Sbjct: 88  NKIGVLSTNFATFLTQISLHSKDYMILLPTTLTLKSLVVLALFSYILMSTLNLNHVPTSV 147

Query: 199 ------------------------------------------------------------ 215
                                                                       
Sbjct: 148 FLAMTQNIKEHTMFSRLSSFYSFFSSLQPFFTNKSIELFPLSESTSDTELTQSVPTSANS 207

[Close]

BLAST of MELO.jh101410.1 vs. ExPASy TrEMBL
Match: A0A5D3D808 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00960 PE=4 SV=1)

HSP 1 Score: 221 bits (564), Expect = 1.26e-64
Identity = 134/289 (46.37%), Postives = 134/289 (46.37%), Query Frame = 0


Query: 79  SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHLEA---------- 138
           SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHL            
Sbjct: 28  SGSIDEKTIGTDHKVGRLFELLSLQVPPPSSISAPVTDSDTYQWHLHLALLFRTLAPTPL 87

Query: 139 ------------------------------------------------------------ 198
                                                                       
Sbjct: 88  NKIGVLSTNFATFLTQISLHSKDYMILLPTTLTLKSLVVLALFSYILMSTLNLNHVPTSV 147

Query: 199 ------------------------------------------------------------ 215
                                                                       
Sbjct: 148 FLAMTQNIKEHTMFSRLSSFYSFFSSLQPFFTNKSIELFPLSESTSDTELTQSVPTSANS 207

[Close]

BLAST of MELO.jh101410.1 vs. ExPASy TrEMBL
Match: A0A5D3BCB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00310 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 2.50e-48
Identity = 80/96 (83.33%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 127 EASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCL 186
           EASTDPLWQK M+DELQALEK HTWDYVDLP GKR I  KWIYKIKTHSDG IECYKT L
Sbjct: 88  EASTDPLWQKAMNDELQALEKTHTWDYVDLPSGKRSIGCKWIYKIKTHSDGTIECYKTRL 147

Query: 187 VAKGYSQEYGIDYEEIFAHVARMTSIRSLLAVVAAK 222
           VAKGY Q+YGIDYEE FAHVAR+TS+RSLL V AAK
Sbjct: 148 VAKGYFQKYGIDYEETFAHVARITSVRSLLVVAAAK 183

[Close]

BLAST of MELO.jh101410.1 vs. ExPASy TrEMBL
Match: A0A5A7UC36 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001560 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 1.78e-47
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 127 EASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCL 186
           EASTDPLWQK M+DELQALEK HTWDYVDLPPGKRPI +KWIYKIKTHSDG I+CYK  L
Sbjct: 608 EASTDPLWQKVMNDELQALEKTHTWDYVDLPPGKRPIGWKWIYKIKTHSDGTIKCYKARL 667

Query: 187 VAKGYSQEYGIDYEEIFAHVARMTSIRSLLAVVAAKQ 223
           VAKGYSQEYGIDY+E FAHVARMTS+RSLLAV AAKQ
Sbjct: 668 VAKGYSQEYGIDYKETFAHVARMTSVRSLLAVAAAKQ 704

[Close]

BLAST of MELO.jh101410.1 vs. ExPASy TrEMBL
Match: A0A5A7TP23 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00660 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 2.51e-47
Identity = 82/97 (84.54%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 127 EASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCL 186
           +ASTDPLWQK M+DELQALEK HTWDYVDLPP KRPID KWIYKIKTHSDG IECYK  L
Sbjct: 91  KASTDPLWQKAMNDELQALEKTHTWDYVDLPPSKRPIDCKWIYKIKTHSDGTIECYKARL 150

Query: 187 VAKGYSQEYGIDYEEIFAHVARMTSIRSLLAVVAAKQ 223
           VAKGYSQEYGIDYEE FA VARM S+RSLLAV A KQ
Sbjct: 151 VAKGYSQEYGIDYEETFAPVARMMSVRSLLAVAAVKQ 187

[Close]

BLAST of MELO.jh101410.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-22
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 127 EASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCL 186
           EA    +W   M DE+ A+E  HTW+   LPP K+PI  KW+YKIK +SDG IE YK  L
Sbjct: 91  EAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARL 150

Query: 187 VAKGYSQEYGIDYEEIFAHVARMTSIRSLLAVVA 221
           VAKGY+Q+ GID+ E F+ V ++TS++ +LA+ A
Sbjct: 151 VAKGYTQQEGIDFIETFSPVCKLTSVKLILAISA 184

[Close]

BLAST of MELO.jh101410.1 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-14
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 128 ASTDPLWQKTMSDELQALEKMHTWDYVDLPPGKRPIDYKWIYKIKTHSDGIIECYKTCLV 187
           A  DP W + M +EL AL +  TW  V  P  +  +  KW++K K HSDG ++  K  LV
Sbjct: 34  ALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLV 93

Query: 188 AKGYSQEYGIDYEEIFAHVARMTSIRSLLAV 219
           AKG+ QE GI + E ++ V R  +IR++L V
Sbjct: 94  AKGFHQEEGIYFVETYSPVVRTATIRTILNV 124

The following BLAST results are available for this feature:

BLAST of MELO.jh101410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041561.1	1.86e-64	46.37	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK19695.1	2.60e-64	46.37	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0045086.1	5.16e-48	83.33	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96241.1 retrotransposon p...	[more]
KAA0051195.1	3.67e-47	86.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0043165.1	5.19e-47	84.54	Integrase, catalytic core [Cucumis melo var. makuwa] >TYK12300.1 Integrase, cata...	[more]

BLAST of MELO.jh101410.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.7e-16	45.35	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.3e-13	43.62	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.7e-13	43.62	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	3.0e-13	41.76	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
P04146	4.3e-12	39.53	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of MELO.jh101410.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIV1	8.99e-65	46.37	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3D808	1.26e-64	46.37	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BCB7	2.50e-48	83.33	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UC36	1.78e-47	86.60	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TP23	2.51e-47	84.54	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of MELO.jh101410.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.7e-22	51.06	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.1e-14	41.76	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 149..221 e-value: 2.7E-16 score: 59.9
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 133..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh101410.1.t1	MELO.jh101410.1.t1	mRNA