MELO.jh101244.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh101244.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionReverse transcriptase
Locationchr03: 4799779 .. 4800588 (-)
RNA-Seq ExpressionMELO.jh101244.1
SyntenyMELO.jh101244.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCAGCCGAGCTAAAAGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCACCTTGGGGAGCCCCAGTATTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGTATTGACTATCGAGAGCTGAACAAGGTGACAGTCAAAAACCGCTATCCCTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGAATTAGGGATGGTGACATTCCCAAGACGGCCTTTCGATCGAGGTACGGACATTATGAGTTCGTGGTGATGTCTTTCGGCTTGACTAACGCTCCTGCAGTGTTCATGGATTTGATGAACAGGGTGTTTAAGGAATTTCTAGACTCGTTCGTCATAGTCTTCATTGACGACATCCTGATTTACTCGAAAACCGAGGCTGAGCACGAGGAGCACTTGCACCAGGTGTTGGAGACTCTTCGAGCCAACCAGCTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAAGAAGGTGACGTTTCTTGGCCACGTGGTTTCCAGTGAAGGAGTTTCAGTGGATCCCGCAAAGATTGAAGCGGTGACCAATTGGCCTCGACCGTCCACGGTTAGTGAAATTCGAAGTTTTCTGGGCTTGGCAGGTTACTATAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCGTTGACCCAGTTGACCAAGAAGGGAACCCCTTTTGTATGGAGCCCAAGATGCGAGCTAGCCTCAGGAGCTTAA

mRNA sequence

ATGGCTCCAGCCGAGCTAAAAGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCACCTTGGGGAGCCCCAGTATTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGTATTGACTATCGAGAGCTGAACAAGGTGACAGTCAAAAACCGCTATCCCTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGAATTAGGGATGGTGACATTCCCAAGACGGCCTTTCGATCGAGGTACGGACATTATGAGTTCGTGGTGATGTCTTTCGGCTTGACTAACGCTCCTGCAGTGTTCATGGATTTGATGAACAGGGTGTTTAAGGAATTTCTAGACTCGTTCGTCATAGTCTTCATTGACGACATCCTGATTTACTCGAAAACCGAGGCTGAGCACGAGGAGCACTTGCACCAGGTGTTGGAGACTCTTCGAGCCAACCAGCTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAAGAAGGTGACGTTTCTTGGCCACGTGGTTTCCAGTGAAGGAGTTTCAGTGGATCCCGCAAAGATTGAAGCGGTGACCAATTGGCCTCGACCGTCCACGGTTAGTGAAATTCGAAGTTTTCTGGGCTTGGCAGGTTACTATAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCGTTGACCCAGTTGACCAAGAAGGGAACCCCTTTTGTATGGAGCCCAAGATGCGAGCTAGCCTCAGGAGCTTAA

Coding sequence (CDS)

ATGGCTCCAGCCGAGCTAAAAGAGTTGAAGGTCCAGTTACAGGAGTTGCTGGACAAAGGCTTCATCCGGCCCAGTGTGTCACCTTGGGGAGCCCCAGTATTGTTCGTGAAGAAGAAGGATGGGTCGATGCGCCTTTGTATTGACTATCGAGAGCTGAACAAGGTGACAGTCAAAAACCGCTATCCCTTGCCCAGGATTGATGACTTGTTCGATCAGTTGCAGGGAGCCACTGTCTTTTCCAAGATCGACCTGCGATCAGGCTATCACCAGTTGAGAATTAGGGATGGTGACATTCCCAAGACGGCCTTTCGATCGAGGTACGGACATTATGAGTTCGTGGTGATGTCTTTCGGCTTGACTAACGCTCCTGCAGTGTTCATGGATTTGATGAACAGGGTGTTTAAGGAATTTCTAGACTCGTTCGTCATAGTCTTCATTGACGACATCCTGATTTACTCGAAAACCGAGGCTGAGCACGAGGAGCACTTGCACCAGGTGTTGGAGACTCTTCGAGCCAACCAGCTGTATGCCAAGTTCTCCAAGTGTGAATTCTGGTTAAAGAAGGTGACGTTTCTTGGCCACGTGGTTTCCAGTGAAGGAGTTTCAGTGGATCCCGCAAAGATTGAAGCGGTGACCAATTGGCCTCGACCGTCCACGGTTAGTGAAATTCGAAGTTTTCTGGGCTTGGCAGGTTACTATAGGAGGTTCGTGGAAGACTTCTCACGTATAGCCAGCCCGTTGACCCAGTTGACCAAGAAGGGAACCCCTTTTGTATGGAGCCCAAGATGCGAGCTAGCCTCAGGAGCTTAA

Protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTKKGTPFVWSPRCELASGA
Homology
BLAST of MELO.jh101244.1 vs. NCBI nr
Match: KAA0066469.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 521 bits (1343), Expect = 2.08e-183
Identity = 255/264 (96.59%), Postives = 261/264 (98.86%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK TVKNR
Sbjct: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKATVKNR 60

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVV+SFGLT
Sbjct: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVVSFGLT 120

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETL+AN+LYAKFS
Sbjct: 121 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLQANKLYAKFS 180

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240

Query: 241 SRIASPLTQLTKKGTPFVWSPRCE 264
           SRIASPLTQLT+K TPFVWSP CE
Sbjct: 241 SRIASPLTQLTRKRTPFVWSPACE 264

BLAST of MELO.jh101244.1 vs. NCBI nr
Match: KAA0040693.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 522 bits (1344), Expect = 4.40e-180
Identity = 254/264 (96.21%), Postives = 260/264 (98.48%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN 
Sbjct: 356 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNC 415

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 416 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 475

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDI++YSKTE EHEEHLHQVLETLRAN+LYAKFS
Sbjct: 476 NAPAVFMDLMNRVFKDFLDSFVIVFIDDIMVYSKTEVEHEEHLHQVLETLRANKLYAKFS 535

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWL+KVTFLGHVVSSEGVSVDP KIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 536 KCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 595

Query: 241 SRIASPLTQLTKKGTPFVWSPRCE 264
           SRIASPLTQLT+KGTPFVWSP CE
Sbjct: 596 SRIASPLTQLTRKGTPFVWSPACE 619

BLAST of MELO.jh101244.1 vs. NCBI nr
Match: KAA0053301.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 526 bits (1355), Expect = 9.54e-180
Identity = 258/264 (97.73%), Postives = 262/264 (99.24%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 133

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 193

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAN+LYAKFS
Sbjct: 194 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 253

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNW RPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 254 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 313

Query: 241 SRIASPLTQLTKKGTPFVWSPRCE 264
           SRIASPLTQLT+KGTPFVWSP CE
Sbjct: 314 SRIASPLTQLTRKGTPFVWSPACE 337

BLAST of MELO.jh101244.1 vs. NCBI nr
Match: TYK22443.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 518 bits (1333), Expect = 1.02e-179
Identity = 253/264 (95.83%), Postives = 259/264 (98.11%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           M P ELKELKVQLQELLDK FI PSVSPWGAPVLFVKKKDGSMRLCIDYR+LNKVTVKNR
Sbjct: 137 MVPIELKELKVQLQELLDKSFIWPSVSPWGAPVLFVKKKDGSMRLCIDYRKLNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLET+RAN+LYAKFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETVRANKLYAKFS 316

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRIASPLTQLTKKGTPFVWSPRCE 264
           SRIASPLTQLT+KGTPFVWSP CE
Sbjct: 377 SRIASPLTQLTRKGTPFVWSPACE 400

BLAST of MELO.jh101244.1 vs. NCBI nr
Match: KAA0063793.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 529 bits (1363), Expect = 1.10e-178
Identity = 259/264 (98.11%), Postives = 263/264 (99.62%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 137 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAN+LYAKFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 316

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRIASPLTQLTKKGTPFVWSPRCE 264
           SRIASPLTQLT+KGTPFVWSP CE
Sbjct: 377 SRIASPLTQLTRKGTPFVWSPACE 400

BLAST of MELO.jh101244.1 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.1e-57
Identity = 105/252 (41.67%), Postives = 168/252 (66.67%), Query Frame = 0

Query: 7   KELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRY 66
           +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +R+
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTN 126
           P+P +D++  +L     F+ IDL  G+HQ+ +    + KTAF +++GHYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFSK 186
           APA F   MN + +  L+   +V++DDI+++S +  EH + L  V E L    L  +  K
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFS 246
           CEF  ++ TFLGHV++ +G+  +P KIEA+  +P P+   EI++FLGL GYYR+F+ +F+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 247 RIASPLTQLTKK 254
            IA P+T+  KK
Sbjct: 461 DIAKPMTKCLKK 472

BLAST of MELO.jh101244.1 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.9e-57
Identity = 103/253 (40.71%), Postives = 161/253 (63.64%), Query Frame = 0

Query: 8   ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYP 67
           E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ +RYP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLTNA 127
           +P +D++  +L     F+ IDL  G+HQ+ + +  I KTAF ++ GHYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFSKC 187
           PA F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    L  +  KC
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 EFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDFSR 247
           EF  K+  FLGH+V+ +G+  +P K++A+ ++P P+   EIR+FLGL GYYR+F+ +++ 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

Query: 248 IASPLTQLTKKGT 256
           IA P+T   KK T
Sbjct: 461 IAKPMTSCLKKRT 473

BLAST of MELO.jh101244.1 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-55
Identity = 101/261 (38.70%), Postives = 162/261 (62.07%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
            APA F   +N +  E  +S V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEF   +V F+G+ +S +G +     I+ V  W +P    E+R FLG   Y R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRIASPLTQLTKKGTPFVWSP 262
           S++  PL  L KK   + W+P
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTP 680

BLAST of MELO.jh101244.1 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-55
Identity = 101/261 (38.70%), Postives = 162/261 (62.07%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
            APA F   +N +  E  +S V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEF   +V F+G+ +S +G +     I+ V  W +P    E+R FLG   Y R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRIASPLTQLTKKGTPFVWSP 262
           S++  PL  L KK   + W+P
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTP 680

BLAST of MELO.jh101244.1 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-55
Identity = 101/261 (38.70%), Postives = 162/261 (62.07%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R GD  K AFR   G +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
            APA F   +N +  E  +S V+ ++DDILI+SK+E+EH +H+  VL+ L+   L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEF   +V F+G+ +S +G +     I+ V  W +P    E+R FLG   Y R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRIASPLTQLTKKGTPFVWSP 262
           S++  PL  L KK   + W+P
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTP 680

BLAST of MELO.jh101244.1 vs. ExPASy TrEMBL
Match: A0A5A7VMK1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 521 bits (1343), Expect = 1.01e-183
Identity = 255/264 (96.59%), Postives = 261/264 (98.86%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNK TVKNR
Sbjct: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKATVKNR 60

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVV+SFGLT
Sbjct: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVVSFGLT 120

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETL+AN+LYAKFS
Sbjct: 121 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLQANKLYAKFS 180

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 181 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240

Query: 241 SRIASPLTQLTKKGTPFVWSPRCE 264
           SRIASPLTQLT+K TPFVWSP CE
Sbjct: 241 SRIASPLTQLTRKRTPFVWSPACE 264

BLAST of MELO.jh101244.1 vs. ExPASy TrEMBL
Match: A0A5A7TC72 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00070 PE=4 SV=1)

HSP 1 Score: 522 bits (1344), Expect = 2.13e-180
Identity = 254/264 (96.21%), Postives = 260/264 (98.48%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKN 
Sbjct: 356 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNC 415

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 416 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 475

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDI++YSKTE EHEEHLHQVLETLRAN+LYAKFS
Sbjct: 476 NAPAVFMDLMNRVFKDFLDSFVIVFIDDIMVYSKTEVEHEEHLHQVLETLRANKLYAKFS 535

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWL+KVTFLGHVVSSEGVSVDP KIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 536 KCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 595

Query: 241 SRIASPLTQLTKKGTPFVWSPRCE 264
           SRIASPLTQLT+KGTPFVWSP CE
Sbjct: 596 SRIASPLTQLTRKGTPFVWSPACE 619

BLAST of MELO.jh101244.1 vs. ExPASy TrEMBL
Match: A0A5A7UIB4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001140 PE=4 SV=1)

HSP 1 Score: 526 bits (1355), Expect = 4.62e-180
Identity = 258/264 (97.73%), Postives = 262/264 (99.24%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 133

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 193

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAN+LYAKFS
Sbjct: 194 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 253

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNW RPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 254 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWTRPSTVSEIRSFLGLAGYYRRFVEDF 313

Query: 241 SRIASPLTQLTKKGTPFVWSPRCE 264
           SRIASPLTQLT+KGTPFVWSP CE
Sbjct: 314 SRIASPLTQLTRKGTPFVWSPACE 337

BLAST of MELO.jh101244.1 vs. ExPASy TrEMBL
Match: A0A5D3DFW6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00490 PE=4 SV=1)

HSP 1 Score: 518 bits (1333), Expect = 4.93e-180
Identity = 253/264 (95.83%), Postives = 259/264 (98.11%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           M P ELKELKVQLQELLDK FI PSVSPWGAPVLFVKKKDGSMRLCIDYR+LNKVTVKNR
Sbjct: 137 MVPIELKELKVQLQELLDKSFIWPSVSPWGAPVLFVKKKDGSMRLCIDYRKLNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLET+RAN+LYAKFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETVRANKLYAKFS 316

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRIASPLTQLTKKGTPFVWSPRCE 264
           SRIASPLTQLT+KGTPFVWSP CE
Sbjct: 377 SRIASPLTQLTRKGTPFVWSPACE 400

BLAST of MELO.jh101244.1 vs. ExPASy TrEMBL
Match: A0A5A7V6R2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00070 PE=4 SV=1)

HSP 1 Score: 529 bits (1363), Expect = 5.32e-179
Identity = 259/264 (98.11%), Postives = 263/264 (99.62%), Query Frame = 0

Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 137 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NAPAVFMDLMNRVFKEFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANQLYAKFS 180
           NAPAVFMDLMNRVFK+FLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRAN+LYAKFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 316

Query: 181 KCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 240
           KCEFWL+KVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRIASPLTQLTKKGTPFVWSPRCE 264
           SRIASPLTQLT+KGTPFVWSP CE
Sbjct: 377 SRIASPLTQLTRKGTPFVWSPACE 400

BLAST of MELO.jh101244.1 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-23
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 0

Query: 162 HLHQVLETLRANQLYAKFSKCEFWLKKVTFLG--HVVSSEGVSVDPAKIEAVTNWPRPST 221
           HL  VL+    +Q YA   KC F   ++ +LG  H++S EGVS DPAK+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 222 VSEIRSFLGLAGYYRRFVEDFSRIASPLTQLTKKGTPFVWSPRCELA 267
            +E+R FLGL GYYRRFV+++ +I  PLT+L KK +   W+    LA
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALA 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066469.12.08e-18396.59pol protein [Cucumis melo var. makuwa][more]
KAA0040693.14.40e-18096.21ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0053301.19.54e-18097.73pol protein [Cucumis melo var. makuwa][more]
TYK22443.11.02e-17995.83pol protein [Cucumis melo var. makuwa][more]
KAA0063793.11.10e-17898.11pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P043231.1e-5741.67Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
P208256.9e-5740.71Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
P0CT411.7e-5538.70Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT341.7e-5538.70Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
P0CT351.7e-5538.70Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
Match NameE-valueIdentityDescription
A0A5A7VMK11.01e-18396.59Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00040 PE=... [more]
A0A5A7TC722.13e-18096.21Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7UIB44.62e-18097.73Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001140 P... [more]
A0A5D3DFW64.93e-18095.83Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold53... [more]
A0A5A7V6R25.32e-17998.11Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82... [more]
Match NameE-valueIdentityDescription
ATMG00860.11.3e-2346.73DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 36..195
e-value: 1.2E-28
score: 100.2
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 17..196
score: 10.65903
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 1..121
e-value: 1.3E-88
score: 297.9
NoneNo IPR availablePANTHERPTHR24559:SF324TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEINcoord: 2..266
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 2..266
NoneNo IPR availableCDDcd01647RT_LTRcoord: 20..196
e-value: 4.83235E-102
score: 292.962
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 61..196
e-value: 1.3E-88
score: 297.9
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 206..268
e-value: 1.1E-23
score: 85.0
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..266

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh101244.1.t1MELO.jh101244.1.t1mRNA