MELO.jh101221.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh101221.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Reverse transcriptase
Location	chr03: 1191434 .. 1192555 (+)
RNA-Seq Expression	MELO.jh101221.1
Synteny	MELO.jh101221.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTAGAGCATTACGACGCTGGGTTTGACATGCTATCCCATTTTGCCCCTGATGTAGTGAAGGATGAGGAGGCCAAGACCGAGAATTTTGTTAGAGGTCTCAGACTAGACCTCCAGGGTATTGTCTGAGCCCTCAAGCCAACCACTCATGCTGATGCTTTATGCCTGGCACTAGACTTGAGTCTGCATGAGAGAGTTGATCTGTACAAGGCTGCAAGCAAAGGGTCAACCCTTGGTCAGAAGAGGAAGACTGAGTCGCAGCCGGACTTGGTATCGCAGTGAAACCTGAGGTCAGGAGGTGTCTTCCAGCGGCATCGTCGGGAGCTTGCAGCAGTCGGGAGAACCTTGAGAGAGCTACCTGTTTGTCATAGCTGTGGAAGAGTTCATGAAGGTCATGGCTTGGCCGGGAGCGGAGTATGCTTTAGGTGCAGGCAACCAGGGTATACCGCTGACGCTTGTCGTTGGAAACACATTGAGACTACCCCGCACCATCCTCCCGCTTCTCAGCAGGGAAGAGTTTTTACCACTACTCGTCAGGAGGCCGGGCGAGCTGGTACAGTGATGACAAGTACGCTCCCGATCTTGGGGCACTATGCTTTTGTGCTGTTTGACTCTGGGTCGTCCCATTCGTTCATATCCTTTGTATTCGTTCAACATGTTTGTTTAGAGGTAAAACCGTTGAGTGGTGTATTGTCTGTTTCTACTCCATTTGGGGAGGTTTTTTTGTCTAAAGAAAAGATAAAGGCATGTCAGATAGAGATAGAAAACCAGATGTTAGATGTAACCTTACTAGTGTTAGACATGCAGAAATTTAACGTAATCCTAGGCATGGATTGGTTGTCTGCTAACCATGCAAGTATAGACCGTTTCCGTAAGGAACTCGTTTTTAACCCTCCCTCTAGAGCTAGTTTCAAATTTAAGGGGGTAGGAATCGTATGTATACCCAAGGTCATCTCAGCTATAAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGAGCATCTTGGCAAGCGTATTAGATACCAGAGAACCAGAAGTTTTCTTGTCCTTCGAACCAGTGGTAAAGGAGTACCCTGATGTATTCCTTGACAAGCTTCCAGGACTTTCGCCAGAGAGATAG

mRNA sequence

ATGACTGTAGAGCATTACGACGCTGGGTTTGACATGCTATCCCATTTTGCCCCTGATGTAGTGAAGGATGAGGAGGCCAAGACCGAGAATTTTGTTAGAGGTCTCAGACTAGACCTCCAGGACTTGAGTCTGCATGAGAGAGTTGATCTGTACAAGGCTGCAAGCAAAGGGTCAACCCTTGGTCAGAAGAGGAAGACTGAGTCGCAGCCGGACTTGGTATCGCACTGTGGAAGAGTTCATGAAGGTCATGGCTTGGCCGGGAGCGGAGTATGCTTTAGGTGCAGGCAACCAGGGTATACCGCTGACGCTTGTCGTTGGAAACACATTGAGACTACCCCGCACCATCCTCCCGCTTCTCAGCAGGGAAGAGTTTTTACCACTACTCGTCAGGAGGCCGGGCGAGCTGGTACAGTGATGACAAGTACGCTCCCGATCTTGGGGCACTATGCTTTTGTGCTGTTTGACTCTGGGTCGTCCCATTCGTTCATATCCTTTGTATTCGTTCAACATGTTTGTTTAGAGGTAAAACCGTTGAGTGGTGTATTGTCTGTTTCTACTCCATTTGGGGAGGTTTTTTTGTCTAAAGAAAAGATAAAGGCATGTCAGATAGAGATAGAAAACCAGATGTTAGATGTAACCTTACTAGTGTTAGACATGCAGAAATTTAACGTAATCCTAGGCATGGATTGGTTGTCTGCTAACCATGCAAGTATAGACCGTTTCCGTAAGGAACTCGTTTTTAACCCTCCCTCTAGAGCTAGTTTCAAATTTAAGGGGGTAGGAATCGTATGTATACCCAAGGTCATCTCAGCTATAAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGAGCATCTTGGCAAGCGTATTAGATACCAGAGAACCAGAAGTTTTCTTGTCCTTCGAACCAGTGGTAAAGGAGTACCCTGATGTATTCCTTGACAAGCTTCCAGGACTTTCGCCAGAGAGATAG

Coding sequence (CDS)

ATGACTGTAGAGCATTACGACGCTGGGTTTGACATGCTATCCCATTTTGCCCCTGATGTAGTGAAGGATGAGGAGGCCAAGACCGAGAATTTTGTTAGAGGTCTCAGACTAGACCTCCAGGACTTGAGTCTGCATGAGAGAGTTGATCTGTACAAGGCTGCAAGCAAAGGGTCAACCCTTGGTCAGAAGAGGAAGACTGAGTCGCAGCCGGACTTGGTATCGCACTGTGGAAGAGTTCATGAAGGTCATGGCTTGGCCGGGAGCGGAGTATGCTTTAGGTGCAGGCAACCAGGGTATACCGCTGACGCTTGTCGTTGGAAACACATTGAGACTACCCCGCACCATCCTCCCGCTTCTCAGCAGGGAAGAGTTTTTACCACTACTCGTCAGGAGGCCGGGCGAGCTGGTACAGTGATGACAAGTACGCTCCCGATCTTGGGGCACTATGCTTTTGTGCTGTTTGACTCTGGGTCGTCCCATTCGTTCATATCCTTTGTATTCGTTCAACATGTTTGTTTAGAGGTAAAACCGTTGAGTGGTGTATTGTCTGTTTCTACTCCATTTGGGGAGGTTTTTTTGTCTAAAGAAAAGATAAAGGCATGTCAGATAGAGATAGAAAACCAGATGTTAGATGTAACCTTACTAGTGTTAGACATGCAGAAATTTAACGTAATCCTAGGCATGGATTGGTTGTCTGCTAACCATGCAAGTATAGACCGTTTCCGTAAGGAACTCGTTTTTAACCCTCCCTCTAGAGCTAGTTTCAAATTTAAGGGGGTAGGAATCGTATGTATACCCAAGGTCATCTCAGCTATAAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGAGCATCTTGGCAAGCGTATTAGATACCAGAGAACCAGAAGTTTTCTTGTCCTTCGAACCAGTGGTAAAGGAGTACCCTGATGTATTCCTTGACAAGCTTCCAGGACTTTCGCCAGAGAGATAG

Protein sequence

MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQDLSLHERVDLYKAASKGSTLGQKRKTESQPDLVSHCGRVHEGHGLAGSGVCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQEAGRAGTVMTSTLPILGHYAFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGEVFLSKEKIKACQIEIENQMLDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPPSRASFKFKGVGIVCIPKVISAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPDVFLDKLPGLSPER

Homology

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BLAST of MELO.jh101221.1 vs. NCBI nr
Match: TYK06675.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 576 bits (1485), Expect = 2.19e-205
Identity = 301/354 (85.03%), Postives = 303/354 (85.59%), Query Frame = 0


Query: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQDLSLHERVDLYKAASKGSTL 60
           MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVR       DLSLHERVDL KAASKGSTL
Sbjct: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVR-------DLSLHERVDLSKAASKGSTL 60

Query: 61  GQKRKTESQPDLVSH-------------------------------CGRVHEGHGLAGSG 120
           GQKRKTESQ DLV                                 CGRVHEGHGLAGSG
Sbjct: 61  GQKRKTESQRDLVPQQNLRSEGVFQRHRPELAAVGRTFRELPVCHSCGRVHEGHGLAGSG 120

Query: 121 VCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQEAGRAGTVMTSTLPILGHY 180
           VCFRCRQPGYTADAC WKHIETTPH PPASQQGRVFTTTRQEAGRAGTVMTSTLPILGHY
Sbjct: 121 VCFRCRQPGYTADACHWKHIETTPHQPPASQQGRVFTTTRQEAGRAGTVMTSTLPILGHY 180

Query: 181 AFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGEVFLSKEKIKACQIEIENQM 240
           AFVLFDSGSSHSFISFVFVQHVCLEV+PLSGVLSVSTP GEVFLSKEKIKACQIEIENQM
Sbjct: 181 AFVLFDSGSSHSFISFVFVQHVCLEVEPLSGVLSVSTPSGEVFLSKEKIKACQIEIENQM 240

Query: 241 LDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPPSRASFKFKGVGIVCIPKVI 300
           LDVTLLVLDMQKFNVILGMDWLSANHASIDRF KE+VFNPPSRASFKFKGVGIVCIPKVI
Sbjct: 241 LDVTLLVLDMQKFNVILGMDWLSANHASIDRFCKEVVFNPPSRASFKFKGVGIVCIPKVI 300

Query: 301 SAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPDVFLDKLPGLSPER 323
           SAIKASKLLSQGTWSILASVLDTREPEV LSFEPVVKEYPDVF DKL GL P R
Sbjct: 301 SAIKASKLLSQGTWSILASVLDTREPEVSLSFEPVVKEYPDVFPDKLSGLPPPR 347

[Close]

BLAST of MELO.jh101221.1 vs. NCBI nr
Match: KAA0053210.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK00132.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 478 bits (1229), Expect = 2.73e-161
Identity = 258/373 (69.17%), Postives = 274/373 (73.46%), Query Frame = 0


Query: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQ-------------------D 60
           MTVE YDA FDMLSHF PD+VKDE+A+TE FVRGLRLDLQ                   D
Sbjct: 54  MTVEQYDAEFDMLSHFTPDIVKDEDARTEKFVRGLRLDLQGIVRALRPTTHADALRLALD 113

Query: 61  LSLHERVDLYKAASKGSTLGQKRKTESQPDLVSH-------------------------- 120
           LSLHER D  KAA +GS LGQKRK E QPDL                             
Sbjct: 114 LSLHERADSSKAAGRGSALGQKRKVELQPDLAPQRNLRSGGVFQQHRLELAAAGRILREL 173

Query: 121 -----CGRVHEGHGLAGSGVCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQ 180
                CGRVH G  LAGS VCFRC+QPG+TADAC  K +E TPH PP  QQGR F TTRQ
Sbjct: 174 PICPSCGRVHGGRCLAGSRVCFRCKQPGHTADACPRKPMEATPHQPPTFQQGRGFATTRQ 233

Query: 181 EAGRAGTVMTSTLPILGHYAFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGE 240
           EA +A TV+TSTLPILGHYAFVLFDSGSSHSFISFV VQHV LEV+PLSGVLSVSTP  E
Sbjct: 234 EAEQASTVVTSTLPILGHYAFVLFDSGSSHSFISFVLVQHVGLEVEPLSGVLSVSTPSRE 293

Query: 241 VFLSKEKIKACQIEIENQMLDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPP 300
           V L KEKIKACQIEI NQMLDVTLLVLDMQ F+VILGMDWLSA HASID F KE+VFNPP
Sbjct: 294 VLLFKEKIKACQIEIANQMLDVTLLVLDMQDFDVILGMDWLSAYHASIDCFGKEVVFNPP 353

Query: 301 SRASFKFKGVGIVCIPKVISAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPD 323
           SR SFKFKG GIVCIPKVISA+KASKLLSQGTWS LASVLDTREP+  LS EPVV+EYPD
Sbjct: 354 SRTSFKFKGAGIVCIPKVISAMKASKLLSQGTWSFLASVLDTREPKASLSSEPVVREYPD 413

[Close]

BLAST of MELO.jh101221.1 vs. NCBI nr
Match: KAA0063370.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 487 bits (1253), Expect = 1.50e-158
Identity = 259/373 (69.44%), Postives = 280/373 (75.07%), Query Frame = 0


Query: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQ-------------------D 60
           MTVE YDA FDMLS FAPDVV+DE A+TE FVRGLRLDLQ                   D
Sbjct: 1   MTVEQYDAEFDMLSRFAPDVVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALD 60

Query: 61  LSLHERVDLYKAASKGSTLGQKRKTESQPDLVSH-------------------------- 120
           LS +ERVD  KAAS G+TLGQKRK E+QPD++                            
Sbjct: 61  LSPNERVDSSKAASGGTTLGQKRKVETQPDVIPQRTLRSGGVFQRHRRELAAAGRTLREL 120

Query: 121 -----CGRVHEGHGLAGSGVCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQ 180
                CGRVH GH L GSGVCFRCRQPG+TADAC WK  ETTPH P ASQQGRVF TTRQ
Sbjct: 121 PACTTCGRVHGGHCLVGSGVCFRCRQPGHTADACPWKPFETTPHQPSASQQGRVFATTRQ 180

Query: 181 EAGRAGTVMTSTLPILGHYAFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGE 240
           EA RAGTV+T TLPILGHYAFVLFDSGSSHSFIS VFVQHV LEV+PL  VLSVSTPFGE
Sbjct: 181 EAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPLGSVLSVSTPFGE 240

Query: 241 VFLSKEKIKACQIEIENQMLDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPP 300
           V LSKEKIKAC++EI N MLDVTLLVLDMQ F+VILGMDWLSANHA+ID F KE+VFNPP
Sbjct: 241 VLLSKEKIKACRVEIVNHMLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPP 300

Query: 301 SRASFKFKGVGIVCIPKVISAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPD 323
           S +SFKF G G+VCIPKVISA+KASKLLSQGTW ILASV+D REPEV LS EPVV+EYPD
Sbjct: 301 SGSSFKFSGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPD 360

[Close]

BLAST of MELO.jh101221.1 vs. NCBI nr
Match: TYJ98666.1 (hypothetical protein E5676_scaffold507G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 483 bits (1243), Expect = 2.07e-157
Identity = 265/373 (71.05%), Postives = 278/373 (74.53%), Query Frame = 0


Query: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQD------------------- 60
           MTVE YDA FDMLS F PDVVKD EA+TE FVRGLRLDLQD                   
Sbjct: 166 MTVEQYDAEFDMLSRFVPDVVKDNEARTEKFVRGLRLDLQDIVRALRPTTHADALRVALD 225

Query: 61  LSLHERVDLYKAASKGSTLGQKRKTESQPDL----------------------------- 120
           LSLHER D +KAA +GS LGQKRK E QPDL                             
Sbjct: 226 LSLHERADSFKAADRGSALGQKRKVELQPDLTPQRNLRSGGVFQRHRRELAAAGRILREL 285

Query: 121 -VSH-CGRVHEGHGLAGSGVCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQ 180
            V H CG VHEGH LA S VCFRCRQP +TADAC  K IETTPH PP SQQGRVF TTRQ
Sbjct: 286 PVCHSCGIVHEGHCLAESRVCFRCRQPEHTADACPRKPIETTPHQPPTSQQGRVFATTRQ 345

Query: 181 EAGRAGTVMTSTLPILGHYAFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGE 240
           EA RAGTV+T TLPILGHYAFVLFDSGSSHSFIS VFVQHV LEV+PLSGVLSVSTP GE
Sbjct: 346 EAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPLSGVLSVSTPSGE 405

Query: 241 VFLSKEKIKACQIEIENQMLDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPP 300
           V LSKEKIKACQIEI  QMLDVTLLVL MQ F+VILGMDWLSANHASID F KE+VFNP 
Sbjct: 406 VLLSKEKIKACQIEIAKQMLDVTLLVLGMQDFDVILGMDWLSANHASIDCFGKEVVFNPS 465

Query: 301 SRASFKFKGVGIVCIPKVISAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPD 323
           SR SFKFK VGIVC PKVISA+KASKLLSQGTWSILAS++DTREPEV LS EPVV+EYPD
Sbjct: 466 SRTSFKFKRVGIVCTPKVISAMKASKLLSQGTWSILASIVDTREPEVSLSSEPVVREYPD 525

[Close]

BLAST of MELO.jh101221.1 vs. NCBI nr
Match: KAA0047468.1 (hypothetical protein E6C27_scaffold498G00810 [Cucumis melo var. makuwa])

HSP 1 Score: 483 bits (1243), Expect = 2.07e-157
Identity = 265/373 (71.05%), Postives = 278/373 (74.53%), Query Frame = 0


Query: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQD------------------- 60
           MTVE YDA FDMLS F PDVVKD EA+TE FVRGLRLDLQD                   
Sbjct: 166 MTVEQYDAEFDMLSRFVPDVVKDNEARTEKFVRGLRLDLQDIVRALRPTTHADALRVALD 225

Query: 61  LSLHERVDLYKAASKGSTLGQKRKTESQPDL----------------------------- 120
           LSLHER D +KAA +GS LGQKRK E QPDL                             
Sbjct: 226 LSLHERADSFKAADRGSALGQKRKVELQPDLTPQRNLRSGGVFQRHRRELAAAGRILREL 285

Query: 121 -VSH-CGRVHEGHGLAGSGVCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQ 180
            V H CG VHEGH LA S VCFRCRQP +TADAC  K IETTPH PP SQQGRVF TTRQ
Sbjct: 286 PVCHSCGIVHEGHCLAESRVCFRCRQPEHTADACPRKPIETTPHQPPTSQQGRVFATTRQ 345

Query: 181 EAGRAGTVMTSTLPILGHYAFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGE 240
           EA RAGTV+T TLPILGHYAFVLFDSGSSHSFIS VFVQHV LEV+PLSGVLSVSTP GE
Sbjct: 346 EAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPLSGVLSVSTPSGE 405

Query: 241 VFLSKEKIKACQIEIENQMLDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPP 300
           V LSKEKIKACQIEI  QMLDVTLLVL MQ F+VILGMDWLSANHASID F KE+VFNP 
Sbjct: 406 VLLSKEKIKACQIEIAKQMLDVTLLVLGMQDFDVILGMDWLSANHASIDCFGKEVVFNPS 465

Query: 301 SRASFKFKGVGIVCIPKVISAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPD 323
           SR SFKFK VGIVC PKVISA+KASKLLSQGTWSILAS++DTREPEV LS EPVV+EYPD
Sbjct: 466 SRTSFKFKRVGIVCTPKVISAMKASKLLSQGTWSILASIVDTREPEVSLSSEPVVREYPD 525

[Close]

BLAST of MELO.jh101221.1 vs. ExPASy TrEMBL
Match: A0A5D3C5L6 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001650 PE=4 SV=1)

HSP 1 Score: 576 bits (1485), Expect = 1.06e-205
Identity = 301/354 (85.03%), Postives = 303/354 (85.59%), Query Frame = 0


Query: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQDLSLHERVDLYKAASKGSTL 60
           MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVR       DLSLHERVDL KAASKGSTL
Sbjct: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVR-------DLSLHERVDLSKAASKGSTL 60

Query: 61  GQKRKTESQPDLVSH-------------------------------CGRVHEGHGLAGSG 120
           GQKRKTESQ DLV                                 CGRVHEGHGLAGSG
Sbjct: 61  GQKRKTESQRDLVPQQNLRSEGVFQRHRPELAAVGRTFRELPVCHSCGRVHEGHGLAGSG 120

Query: 121 VCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQEAGRAGTVMTSTLPILGHY 180
           VCFRCRQPGYTADAC WKHIETTPH PPASQQGRVFTTTRQEAGRAGTVMTSTLPILGHY
Sbjct: 121 VCFRCRQPGYTADACHWKHIETTPHQPPASQQGRVFTTTRQEAGRAGTVMTSTLPILGHY 180

Query: 181 AFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGEVFLSKEKIKACQIEIENQM 240
           AFVLFDSGSSHSFISFVFVQHVCLEV+PLSGVLSVSTP GEVFLSKEKIKACQIEIENQM
Sbjct: 181 AFVLFDSGSSHSFISFVFVQHVCLEVEPLSGVLSVSTPSGEVFLSKEKIKACQIEIENQM 240

Query: 241 LDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPPSRASFKFKGVGIVCIPKVI 300
           LDVTLLVLDMQKFNVILGMDWLSANHASIDRF KE+VFNPPSRASFKFKGVGIVCIPKVI
Sbjct: 241 LDVTLLVLDMQKFNVILGMDWLSANHASIDRFCKEVVFNPPSRASFKFKGVGIVCIPKVI 300

Query: 301 SAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPDVFLDKLPGLSPER 323
           SAIKASKLLSQGTWSILASVLDTREPEV LSFEPVVKEYPDVF DKL GL P R
Sbjct: 301 SAIKASKLLSQGTWSILASVLDTREPEVSLSFEPVVKEYPDVFPDKLSGLPPPR 347

[Close]

BLAST of MELO.jh101221.1 vs. ExPASy TrEMBL
Match: A0A5A7UDC5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00150 PE=4 SV=1)

HSP 1 Score: 478 bits (1229), Expect = 1.32e-161
Identity = 258/373 (69.17%), Postives = 274/373 (73.46%), Query Frame = 0


Query: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQ-------------------D 60
           MTVE YDA FDMLSHF PD+VKDE+A+TE FVRGLRLDLQ                   D
Sbjct: 54  MTVEQYDAEFDMLSHFTPDIVKDEDARTEKFVRGLRLDLQGIVRALRPTTHADALRLALD 113

Query: 61  LSLHERVDLYKAASKGSTLGQKRKTESQPDLVSH-------------------------- 120
           LSLHER D  KAA +GS LGQKRK E QPDL                             
Sbjct: 114 LSLHERADSSKAAGRGSALGQKRKVELQPDLAPQRNLRSGGVFQQHRLELAAAGRILREL 173

Query: 121 -----CGRVHEGHGLAGSGVCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQ 180
                CGRVH G  LAGS VCFRC+QPG+TADAC  K +E TPH PP  QQGR F TTRQ
Sbjct: 174 PICPSCGRVHGGRCLAGSRVCFRCKQPGHTADACPRKPMEATPHQPPTFQQGRGFATTRQ 233

Query: 181 EAGRAGTVMTSTLPILGHYAFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGE 240
           EA +A TV+TSTLPILGHYAFVLFDSGSSHSFISFV VQHV LEV+PLSGVLSVSTP  E
Sbjct: 234 EAEQASTVVTSTLPILGHYAFVLFDSGSSHSFISFVLVQHVGLEVEPLSGVLSVSTPSRE 293

Query: 241 VFLSKEKIKACQIEIENQMLDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPP 300
           V L KEKIKACQIEI NQMLDVTLLVLDMQ F+VILGMDWLSA HASID F KE+VFNPP
Sbjct: 294 VLLFKEKIKACQIEIANQMLDVTLLVLDMQDFDVILGMDWLSAYHASIDCFGKEVVFNPP 353

Query: 301 SRASFKFKGVGIVCIPKVISAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPD 323
           SR SFKFKG GIVCIPKVISA+KASKLLSQGTWS LASVLDTREP+  LS EPVV+EYPD
Sbjct: 354 SRTSFKFKGAGIVCIPKVISAMKASKLLSQGTWSFLASVLDTREPKASLSSEPVVREYPD 413

[Close]

BLAST of MELO.jh101221.1 vs. ExPASy TrEMBL
Match: A0A5A7V809 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4594G00010 PE=4 SV=1)

HSP 1 Score: 487 bits (1253), Expect = 7.25e-159
Identity = 259/373 (69.44%), Postives = 280/373 (75.07%), Query Frame = 0


Query: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQ-------------------D 60
           MTVE YDA FDMLS FAPDVV+DE A+TE FVRGLRLDLQ                   D
Sbjct: 1   MTVEQYDAEFDMLSRFAPDVVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALD 60

Query: 61  LSLHERVDLYKAASKGSTLGQKRKTESQPDLVSH-------------------------- 120
           LS +ERVD  KAAS G+TLGQKRK E+QPD++                            
Sbjct: 61  LSPNERVDSSKAASGGTTLGQKRKVETQPDVIPQRTLRSGGVFQRHRRELAAAGRTLREL 120

Query: 121 -----CGRVHEGHGLAGSGVCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQ 180
                CGRVH GH L GSGVCFRCRQPG+TADAC WK  ETTPH P ASQQGRVF TTRQ
Sbjct: 121 PACTTCGRVHGGHCLVGSGVCFRCRQPGHTADACPWKPFETTPHQPSASQQGRVFATTRQ 180

Query: 181 EAGRAGTVMTSTLPILGHYAFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGE 240
           EA RAGTV+T TLPILGHYAFVLFDSGSSHSFIS VFVQHV LEV+PL  VLSVSTPFGE
Sbjct: 181 EAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPLGSVLSVSTPFGE 240

Query: 241 VFLSKEKIKACQIEIENQMLDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPP 300
           V LSKEKIKAC++EI N MLDVTLLVLDMQ F+VILGMDWLSANHA+ID F KE+VFNPP
Sbjct: 241 VLLSKEKIKACRVEIVNHMLDVTLLVLDMQDFDVILGMDWLSANHANIDCFGKEVVFNPP 300

Query: 301 SRASFKFKGVGIVCIPKVISAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPD 323
           S +SFKF G G+VCIPKVISA+KASKLLSQGTW ILASV+D REPEV LS EPVV+EYPD
Sbjct: 301 SGSSFKFSGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVSLSSEPVVREYPD 360

[Close]

BLAST of MELO.jh101221.1 vs. ExPASy TrEMBL
Match: A0A5A7TX34 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00810 PE=4 SV=1)

HSP 1 Score: 483 bits (1243), Expect = 1.00e-157
Identity = 265/373 (71.05%), Postives = 278/373 (74.53%), Query Frame = 0


Query: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQD------------------- 60
           MTVE YDA FDMLS F PDVVKD EA+TE FVRGLRLDLQD                   
Sbjct: 166 MTVEQYDAEFDMLSRFVPDVVKDNEARTEKFVRGLRLDLQDIVRALRPTTHADALRVALD 225

Query: 61  LSLHERVDLYKAASKGSTLGQKRKTESQPDL----------------------------- 120
           LSLHER D +KAA +GS LGQKRK E QPDL                             
Sbjct: 226 LSLHERADSFKAADRGSALGQKRKVELQPDLTPQRNLRSGGVFQRHRRELAAAGRILREL 285

Query: 121 -VSH-CGRVHEGHGLAGSGVCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQ 180
            V H CG VHEGH LA S VCFRCRQP +TADAC  K IETTPH PP SQQGRVF TTRQ
Sbjct: 286 PVCHSCGIVHEGHCLAESRVCFRCRQPEHTADACPRKPIETTPHQPPTSQQGRVFATTRQ 345

Query: 181 EAGRAGTVMTSTLPILGHYAFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGE 240
           EA RAGTV+T TLPILGHYAFVLFDSGSSHSFIS VFVQHV LEV+PLSGVLSVSTP GE
Sbjct: 346 EAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPLSGVLSVSTPSGE 405

Query: 241 VFLSKEKIKACQIEIENQMLDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPP 300
           V LSKEKIKACQIEI  QMLDVTLLVL MQ F+VILGMDWLSANHASID F KE+VFNP 
Sbjct: 406 VLLSKEKIKACQIEIAKQMLDVTLLVLGMQDFDVILGMDWLSANHASIDCFGKEVVFNPS 465

Query: 301 SRASFKFKGVGIVCIPKVISAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPD 323
           SR SFKFK VGIVC PKVISA+KASKLLSQGTWSILAS++DTREPEV LS EPVV+EYPD
Sbjct: 466 SRTSFKFKRVGIVCTPKVISAMKASKLLSQGTWSILASIVDTREPEVSLSSEPVVREYPD 525

[Close]

BLAST of MELO.jh101221.1 vs. ExPASy TrEMBL
Match: A0A5D3BHW7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00570 PE=4 SV=1)

HSP 1 Score: 483 bits (1243), Expect = 1.00e-157
Identity = 265/373 (71.05%), Postives = 278/373 (74.53%), Query Frame = 0


Query: 1   MTVEHYDAGFDMLSHFAPDVVKDEEAKTENFVRGLRLDLQD------------------- 60
           MTVE YDA FDMLS F PDVVKD EA+TE FVRGLRLDLQD                   
Sbjct: 166 MTVEQYDAEFDMLSRFVPDVVKDNEARTEKFVRGLRLDLQDIVRALRPTTHADALRVALD 225

Query: 61  LSLHERVDLYKAASKGSTLGQKRKTESQPDL----------------------------- 120
           LSLHER D +KAA +GS LGQKRK E QPDL                             
Sbjct: 226 LSLHERADSFKAADRGSALGQKRKVELQPDLTPQRNLRSGGVFQRHRRELAAAGRILREL 285

Query: 121 -VSH-CGRVHEGHGLAGSGVCFRCRQPGYTADACRWKHIETTPHHPPASQQGRVFTTTRQ 180
            V H CG VHEGH LA S VCFRCRQP +TADAC  K IETTPH PP SQQGRVF TTRQ
Sbjct: 286 PVCHSCGIVHEGHCLAESRVCFRCRQPEHTADACPRKPIETTPHQPPTSQQGRVFATTRQ 345

Query: 181 EAGRAGTVMTSTLPILGHYAFVLFDSGSSHSFISFVFVQHVCLEVKPLSGVLSVSTPFGE 240
           EA RAGTV+T TLPILGHYAFVLFDSGSSHSFIS VFVQHV LEV+PLSGVLSVSTP GE
Sbjct: 346 EAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPLSGVLSVSTPSGE 405

Query: 241 VFLSKEKIKACQIEIENQMLDVTLLVLDMQKFNVILGMDWLSANHASIDRFRKELVFNPP 300
           V LSKEKIKACQIEI  QMLDVTLLVL MQ F+VILGMDWLSANHASID F KE+VFNP 
Sbjct: 406 VLLSKEKIKACQIEIAKQMLDVTLLVLGMQDFDVILGMDWLSANHASIDCFGKEVVFNPS 465

Query: 301 SRASFKFKGVGIVCIPKVISAIKASKLLSQGTWSILASVLDTREPEVFLSFEPVVKEYPD 323
           SR SFKFK VGIVC PKVISA+KASKLLSQGTWSILAS++DTREPEV LS EPVV+EYPD
Sbjct: 466 SRTSFKFKRVGIVCTPKVISAMKASKLLSQGTWSILASIVDTREPEVSLSSEPVVREYPD 525

The following BLAST results are available for this feature:

BLAST of MELO.jh101221.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06675.1	2.19e-205	85.03	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0053210.1	2.73e-161	69.17	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK00132.1 ty3-gyp...	[more]
KAA0063370.1	1.50e-158	69.44	pol protein [Cucumis melo var. makuwa]	[more]
TYJ98666.1	2.07e-157	71.05	hypothetical protein E5676_scaffold507G00570 [Cucumis melo var. makuwa]	[more]
KAA0047468.1	2.07e-157	71.05	hypothetical protein E6C27_scaffold498G00810 [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh101221.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh101221.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5L6	1.06e-205	85.03	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7UDC5	1.32e-161	69.17	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V809	7.25e-159	69.44	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45...	[more]
A0A5A7TX34	1.00e-157	71.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BHW7	1.00e-157	71.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO.jh101221.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF08284	RVP_2	coord: 120..249 e-value: 4.6E-36 score: 123.6
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 142..323
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 142..323
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 142..231 e-value: 8.37652E-17 score: 72.3692
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 120..257 e-value: 1.0E-18 score: 69.3
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 142..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh101221.1.t1	MELO.jh101221.1.t1	mRNA