MELO.jh100817.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh100817.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Pentatricopeptide repeat-containing protein
Location	chr07: 16371821 .. 16372186 (+)
RNA-Seq Expression	MELO.jh100817.1
Synteny	MELO.jh100817.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAAAACCATCCGTCGAGTCCACGCCCCAATCACTACACCTGTATTGTTGATCTTCTTGGTCGTGCTGGTCGATTGGATGAAGCATATGATTTGATCAAGTCAACGCCATTCCAGCAGAACCATTCTATTTGGGGGGCTCTGCTTGGTGCGTGCTCGATACACCAGAATGTCGAACTTGGAGAGGTAGCAGCAGAGCAACTTTTCGAGCTTGAGCCTGAAAATACGGGAAACTATATATTACTTGCAAATATTTATGCTGCGATTGGAAGATGGAAAGATGCAGAGAATGTGAGGCATATAATGAGTAAAATAGGCCTAAGAAAGATGCCTGCACAAAGTTCAGTTGGTGCAGCTGTGTAG

mRNA sequence

ATGATCGAAAACCATCCGTCGAGTCCACGCCCCAATCACTACACCTGTATTGTTGATCTTCTTGGTCGTGCTGGTCGATTGGATGAAGCATATGATTTGATCAAGTCAACGCCATTCCAGCAGAACCATTCTATTTGGGGGGCTCTGCTTGGTGCGTGCTCGATACACCAGAATGTCGAACTTGGAGAGGTAGCAGCAGAGCAACTTTTCGAGCTTGAGCCTGAAAATACGGGAAACTATATATTACTTGCAAATATTTATGCTGCGATTGGAAGATGGAAAGATGCAGAGAATGTGAGGCATATAATGAGTAAAATAGGCCTAAGAAAGATGCCTGCACAAAGTTCAGTTGGTGCAGCTGTGTAG

Coding sequence (CDS)

ATGATCGAAAACCATCCGTCGAGTCCACGCCCCAATCACTACACCTGTATTGTTGATCTTCTTGGTCGTGCTGGTCGATTGGATGAAGCATATGATTTGATCAAGTCAACGCCATTCCAGCAGAACCATTCTATTTGGGGGGCTCTGCTTGGTGCGTGCTCGATACACCAGAATGTCGAACTTGGAGAGGTAGCAGCAGAGCAACTTTTCGAGCTTGAGCCTGAAAATACGGGAAACTATATATTACTTGCAAATATTTATGCTGCGATTGGAAGATGGAAAGATGCAGAGAATGTGAGGCATATAATGAGTAAAATAGGCCTAAGAAAGATGCCTGCACAAAGTTCAGTTGGTGCAGCTGTGTAG

Protein sequence

MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVELGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAAV

Homology

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BLAST of MELO.jh100817.1 vs. NCBI nr
Match: XP_008460253.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Cucumis melo] >KAA0066496.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK06145.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 250 bits (638), Expect = 5.78e-77
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE
Sbjct: 555 MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 614

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 120
           LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA
Sbjct: 615 LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 674

[Close]

BLAST of MELO.jh100817.1 vs. NCBI nr
Match: XP_038905919.1 (pentatricopeptide repeat-containing protein At5g39350 [Benincasa hispida])

HSP 1 Score: 234 bits (598), Expect = 4.48e-71
Identity = 111/121 (91.74%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           MIENHPSSPRPNHYTC+VDLLGRAGRLDEAYDLIKS PFQ NHSIWGALLGACSIHQNVE
Sbjct: 555 MIENHPSSPRPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQHNHSIWGALLGACSIHQNVE 614

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 120
           LGE AAE+LFELEPENTGNYILLANIYA +GRWKDAE VRH MSKIGLRKMPAQSSVG A
Sbjct: 615 LGEAAAERLFELEPENTGNYILLANIYATVGRWKDAEKVRHTMSKIGLRKMPAQSSVGVA 674

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BLAST of MELO.jh100817.1 vs. NCBI nr
Match: XP_011653372.1 (pentatricopeptide repeat-containing protein At5g39350 [Cucumis sativus] >KGN53685.1 hypothetical protein Csa_014594 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 3.47e-70
Identity = 111/121 (91.74%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           MIEN+PSSP PNHYTC+VDLLGRAGRLDEAYDLIKS PFQQNHSIWGALLGAC IHQNVE
Sbjct: 555 MIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVE 614

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 120
           LGEVAAE+LFELEPE+TGNYILLANIYAA+GRWKDAENVRHIMSKIGLRK PAQSSVG A
Sbjct: 615 LGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAENVRHIMSKIGLRKTPAQSSVGVA 674

[Close]

BLAST of MELO.jh100817.1 vs. NCBI nr
Match: XP_022155025.1 (pentatricopeptide repeat-containing protein At5g39350 [Momordica charantia])

HSP 1 Score: 230 bits (586), Expect = 2.28e-69
Identity = 108/121 (89.26%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           MIENHPSSPRPNHYTCIVDLLGRAGRLDE YDLI+S PF+ NHSIWGALLGACSIHQNVE
Sbjct: 548 MIENHPSSPRPNHYTCIVDLLGRAGRLDEGYDLIRSMPFKDNHSIWGALLGACSIHQNVE 607

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 120
           LGEVAAE+LF+LEPENTGNYILLANIYA +GRW+DAE VRH+MSKIGLRKMPAQSSVG A
Sbjct: 608 LGEVAAERLFKLEPENTGNYILLANIYAIVGRWRDAEKVRHMMSKIGLRKMPAQSSVGVA 667

[Close]

BLAST of MELO.jh100817.1 vs. NCBI nr
Match: XP_022980544.1 (pentatricopeptide repeat-containing protein At5g39350 isoform X2 [Cucurbita maxima])

HSP 1 Score: 226 bits (577), Expect = 1.86e-68
Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           MIENHPS PRPNHYTCIVDLLGRAGRLDEAYD+IKS PF+ NHSIWGALLGACSIHQNVE
Sbjct: 499 MIENHPSRPRPNHYTCIVDLLGRAGRLDEAYDIIKSMPFKHNHSIWGALLGACSIHQNVE 558

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVG 118
           LGEVAAE+LFELE ENTGNYILLANIYAA+GRWKDAE VRH+MS IGLRKMPAQSSVG
Sbjct: 559 LGEVAAERLFELESENTGNYILLANIYAAVGRWKDAEKVRHMMSNIGLRKMPAQSSVG 616

[Close]

BLAST of MELO.jh100817.1 vs. ExPASy Swiss-Prot
Match: Q9FLZ9 (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.5e-43
Identity = 77/117 (65.81%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           M+E++ +  R NHYTCIVDLLGRAGRLDEAY+LI + PF+   ++WGALL AC  H+NV+
Sbjct: 551 MLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQ 610

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSV 118
           LGE+AA +LFELEPENTGNY+LLANIYAA+GRWKD E VR +M  +GLRK P  S++
Sbjct: 611 LGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTI 667

[Close]

BLAST of MELO.jh100817.1 vs. ExPASy Swiss-Prot
Match: Q9LNU6 (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-33
Identity = 62/115 (53.91%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           M E +   PR  HY+C+V+LLGRAG+L EAYDLIK  PF+ +  +WGALL +C +  NV+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQS 116
           L E+AAE+LF LEPEN G Y+LL+NIYAA G W + +++R+ M  +GL+K P  S
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629

[Close]

BLAST of MELO.jh100817.1 vs. ExPASy Swiss-Prot
Match: Q9FFG8 (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.5e-31
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           M +     P  +HYTC+VDLLGR GRL EA +LIK+   + +  +WGALLGAC IH N E
Sbjct: 411 MYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPE 470

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSV 118
           + E+AAE LFELEP+  GNYILL+N+YA+ G W     VR ++ + GL+K PA S V
Sbjct: 471 IAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWV 527

[Close]

BLAST of MELO.jh100817.1 vs. ExPASy Swiss-Prot
Match: P0C899 (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 56/117 (47.86%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           M +++  +PR  H  C+VDLLGRAG++ EAY  I+    + N  +WGALLGAC +H + +
Sbjct: 436 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTD 495

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSV 118
           +G +AA++LF+L PE +G Y+LL+NIYA  GRW++  N+R+IM   GL+K P  S+V
Sbjct: 496 IGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNV 552

[Close]

BLAST of MELO.jh100817.1 vs. ExPASy Swiss-Prot
Match: Q9FHR3 (Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E37 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-30
Identity = 57/105 (54.29%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 11  PNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVELGEVAAEQLF 70
           P+HY+CIV+LL R G+L EAY+LIKS PF+ + S WG+LLG CS+H N E+ EV A  LF
Sbjct: 442 PDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLF 501

Query: 71  ELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQS 116
           ELEP++ G+Y+LL+NIYAA+ RW D  ++R  M++ G+ K+  +S
Sbjct: 502 ELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546

[Close]

BLAST of MELO.jh100817.1 vs. ExPASy TrEMBL
Match: A0A5A7VJI1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00480 PE=4 SV=1)

HSP 1 Score: 250 bits (638), Expect = 2.80e-77
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE
Sbjct: 555 MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 614

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 120
           LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA
Sbjct: 615 LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 674

[Close]

BLAST of MELO.jh100817.1 vs. ExPASy TrEMBL
Match: A0A1S3CC33 (pentatricopeptide repeat-containing protein At5g39350 OS=Cucumis melo OX=3656 GN=LOC103499128 PE=4 SV=1)

HSP 1 Score: 250 bits (638), Expect = 2.80e-77
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE
Sbjct: 555 MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 614

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 120
           LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA
Sbjct: 615 LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 674

[Close]

BLAST of MELO.jh100817.1 vs. ExPASy TrEMBL
Match: A0A0A0KVP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G102340 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 1.68e-70
Identity = 111/121 (91.74%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           MIEN+PSSP PNHYTC+VDLLGRAGRLDEAYDLIKS PFQQNHSIWGALLGAC IHQNVE
Sbjct: 555 MIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVE 614

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 120
           LGEVAAE+LFELEPE+TGNYILLANIYAA+GRWKDAENVRHIMSKIGLRK PAQSSVG A
Sbjct: 615 LGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAENVRHIMSKIGLRKTPAQSSVGVA 674

[Close]

BLAST of MELO.jh100817.1 vs. ExPASy TrEMBL
Match: A0A6J1DL96 (pentatricopeptide repeat-containing protein At5g39350 OS=Momordica charantia OX=3673 GN=LOC111022172 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 1.11e-69
Identity = 108/121 (89.26%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           MIENHPSSPRPNHYTCIVDLLGRAGRLDE YDLI+S PF+ NHSIWGALLGACSIHQNVE
Sbjct: 548 MIENHPSSPRPNHYTCIVDLLGRAGRLDEGYDLIRSMPFKDNHSIWGALLGACSIHQNVE 607

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVGAA 120
           LGEVAAE+LF+LEPENTGNYILLANIYA +GRW+DAE VRH+MSKIGLRKMPAQSSVG A
Sbjct: 608 LGEVAAERLFKLEPENTGNYILLANIYAIVGRWRDAEKVRHMMSKIGLRKMPAQSSVGVA 667

[Close]

BLAST of MELO.jh100817.1 vs. ExPASy TrEMBL
Match: A0A6J1IZK3 (pentatricopeptide repeat-containing protein At5g39350 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479890 PE=4 SV=1)

HSP 1 Score: 226 bits (577), Expect = 9.00e-69
Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           MIENHPS PRPNHYTCIVDLLGRAGRLDEAYD+IKS PF+ NHSIWGALLGACSIHQNVE
Sbjct: 499 MIENHPSRPRPNHYTCIVDLLGRAGRLDEAYDIIKSMPFKHNHSIWGALLGACSIHQNVE 558

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSVG 118
           LGEVAAE+LFELE ENTGNYILLANIYAA+GRWKDAE VRH+MS IGLRKMPAQSSVG
Sbjct: 559 LGEVAAERLFELESENTGNYILLANIYAAVGRWKDAEKVRHMMSNIGLRKMPAQSSVG 616

[Close]

BLAST of MELO.jh100817.1 vs. TAIR 10
Match: AT5G39350.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-44
Identity = 77/117 (65.81%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           M+E++ +  R NHYTCIVDLLGRAGRLDEAY+LI + PF+   ++WGALL AC  H+NV+
Sbjct: 551 MLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQ 610

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSV 118
           LGE+AA +LFELEPENTGNY+LLANIYAA+GRWKD E VR +M  +GLRK P  S++
Sbjct: 611 LGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTI 667

[Close]

BLAST of MELO.jh100817.1 vs. TAIR 10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 9.9e-35
Identity = 62/115 (53.91%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           M E +   PR  HY+C+V+LLGRAG+L EAYDLIK  PF+ +  +WGALL +C +  NV+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVD 574

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQS 116
           L E+AAE+LF LEPEN G Y+LL+NIYAA G W + +++R+ M  +GL+K P  S
Sbjct: 575 LAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCS 629

[Close]

BLAST of MELO.jh100817.1 vs. TAIR 10
Match: AT5G44230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 134.4 bits (337), Expect = 6.0e-32
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           M +     P  +HYTC+VDLLGR GRL EA +LIK+   + +  +WGALLGAC IH N E
Sbjct: 411 MYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPE 470

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSV 118
           + E+AAE LFELEP+  GNYILL+N+YA+ G W     VR ++ + GL+K PA S V
Sbjct: 471 IAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWV 527

[Close]

BLAST of MELO.jh100817.1 vs. TAIR 10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 134.0 bits (336), Expect = 7.9e-32
Identity = 56/117 (47.86%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 1   MIENHPSSPRPNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVE 60
           M +++  +PR  H  C+VDLLGRAG++ EAY  I+    + N  +WGALLGAC +H + +
Sbjct: 436 MTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTD 495

Query: 61  LGEVAAEQLFELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQSSV 118
           +G +AA++LF+L PE +G Y+LL+NIYA  GRW++  N+R+IM   GL+K P  S+V
Sbjct: 496 IGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNV 552

[Close]

BLAST of MELO.jh100817.1 vs. TAIR 10
Match: AT5G37570.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-31
Identity = 57/105 (54.29%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 11  PNHYTCIVDLLGRAGRLDEAYDLIKSTPFQQNHSIWGALLGACSIHQNVELGEVAAEQLF 70
           P+HY+CIV+LL R G+L EAY+LIKS PF+ + S WG+LLG CS+H N E+ EV A  LF
Sbjct: 442 PDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLF 501

Query: 71  ELEPENTGNYILLANIYAAIGRWKDAENVRHIMSKIGLRKMPAQS 116
           ELEP++ G+Y+LL+NIYAA+ RW D  ++R  M++ G+ K+  +S
Sbjct: 502 ELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546

The following BLAST results are available for this feature:

BLAST of MELO.jh100817.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460253.1	5.78e-77	100.00	PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Cucumis melo] ...	[more]
XP_038905919.1	4.48e-71	91.74	pentatricopeptide repeat-containing protein At5g39350 [Benincasa hispida]	[more]
XP_011653372.1	3.47e-70	91.74	pentatricopeptide repeat-containing protein At5g39350 [Cucumis sativus] >KGN5368...	[more]
XP_022155025.1	2.28e-69	89.26	pentatricopeptide repeat-containing protein At5g39350 [Momordica charantia]	[more]
XP_022980544.1	1.86e-68	90.68	pentatricopeptide repeat-containing protein At5g39350 isoform X2 [Cucurbita maxi...	[more]

BLAST of MELO.jh100817.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLZ9	2.5e-43	65.81	Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana OX...	[more]
Q9LNU6	1.4e-33	53.91	Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX...	[more]
Q9FFG8	8.5e-31	52.99	Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX...	[more]
P0C899	1.1e-30	47.86	Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th...	[more]
Q9FHR3	1.4e-30	54.29	Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis th...	[more]

BLAST of MELO.jh100817.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VJI1	2.80e-77	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CC33	2.80e-77	100.00	pentatricopeptide repeat-containing protein At5g39350 OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0KVP5	1.68e-70	91.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G102340 PE=4 SV=1	[more]
A0A6J1DL96	1.11e-69	89.26	pentatricopeptide repeat-containing protein At5g39350 OS=Momordica charantia OX=...	[more]
A0A6J1IZK3	9.00e-69	90.68	pentatricopeptide repeat-containing protein At5g39350 isoform X2 OS=Cucurbita ma...	[more]

BLAST of MELO.jh100817.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39350.1	1.8e-44	65.81	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G20230.1	9.9e-35	53.91	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G44230.1	6.0e-32	52.99	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G49142.1	7.9e-32	47.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G37570.1	1.0e-31	54.29	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 14..35 e-value: 0.011 score: 15.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 14..35 e-value: 0.0021 score: 16.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..117 e-value: 8.2E-10 score: 40.6
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 14..97
None	No IPR available	PANTHER	PTHR47926:SF187	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 1..115
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh100817.1.t1	MELO.jh100817.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding