MELO.jh100717.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh100717.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionviolaxanthin de-epoxidase, chloroplastic-like
Locationchr11: 1511405 .. 1512384 (-)
RNA-Seq ExpressionMELO.jh100717.1
SyntenyMELO.jh100717.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTTGAGTTGTATTTGAATTCAGGAACTAGTATCGGAAATGGATGGCCTCTCAACCCCAATTTCCATTTCTTCCTTTCACATCGAAAACCCACTCATTCCCCTACTCTGTCGATGCCCAGCCACCGGCCTACTGTTTCTCGTCGGCTGCTCACAGTTCCACCGCCCGTAGTTGCTGAGGCGAACAAGAACGCGGCGATGACGGATACTCCGGTGAGAATAGTGGCGATCGTTGGTGAAGGAAGCATTAGTCCCTTGAAATCCACTCCTTGGAAGAAGTTATGCTTCACACCGTGAGTGCTCCATTTTTTATATTTTTAAATGTGGATAAGAGGACTCTGACAATGAACAAATAATAGTAATAATAAATATTATAAAAAGATTAGTAATAATTTTGTTTCTTAATCTTTTGATAGATTTTCTGTTTTTAAAATTGAGTTAAAAATTGATAATTCAACCCATGAATTTGTTGAACTCGAAAAAAAACTGATAATTCAACCCATGAATTTGTTTGTTCTAATTTGAAAACTTAAAATGGATATGGTATTTGTGCTTTATCTATATTTGAAATGTCACATATTTGAAGCATGAAACTGAACTTGCTTATGAGAAAAATCCAACTAATTATCAACGTAGTGTTCATATCTTTTAGGTAGCATGTTAAGGTATCAAATTTTATCATTCTTCATGGTCAAAAGATAAAGACAGGTGCAAGAAATAGTCTTGGAGTAAAATCAGTCTTAAATAATATAGTATGTTTTTGGACCAATTAGTGATTAAAAATAGTATTTGAGTGAGAAGTTATTTCTCCTAAATTAATATTGATTTCTACTTGATCGGTGATCGATTTTCTTAGCATGATCAAGATAAACAAGAAAGAAACATTCTTTGTATTTTTCGACTCGAAACTTTGCCTAATCATAATGGTTTTTACCCACTTTTATGATGTTCTTTATATAAACAGGCAAAGCGACTAA

mRNA sequence

ATGAAAGTTGAGTTGTATTTGAATTCAGGAACTAGTATCGGAAATGGATGGCCTCTCAACCCCAATTTCCATTTCTTCCTTTCACATCGAAAACCCACTCATTCCCCTACTCTGTCGATGCCCAGCCACCGGCCTACTGTTTCTCGTCGGCTGCTCACAGTTCCACCGCCCGTAGTTGCTGAGGCGAACAAGAACGCGGCGATGACGGATACTCCGGTGAGAATAGTGGCGATCGTTGGTGAAGGAAGCATTAGTCCCTTGAAATCCACTCCTTGGAAGAAGTTATGCTTCACACCGCAAAGCGACTAA

Coding sequence (CDS)

ATGAAAGTTGAGTTGTATTTGAATTCAGGAACTAGTATCGGAAATGGATGGCCTCTCAACCCCAATTTCCATTTCTTCCTTTCACATCGAAAACCCACTCATTCCCCTACTCTGTCGATGCCCAGCCACCGGCCTACTGTTTCTCGTCGGCTGCTCACAGTTCCACCGCCCGTAGTTGCTGAGGCGAACAAGAACGCGGCGATGACGGATACTCCGGTGAGAATAGTGGCGATCGTTGGTGAAGGAAGCATTAGTCCCTTGAAATCCACTCCTTGGAAGAAGTTATGCTTCACACCGCAAAGCGACTAA

Protein sequence

MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVAEANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKLCFTPQSD
Homology
[Close]
BLAST of MELO.jh100717.1 vs. NCBI nr
Match: KAA0045901.1 (violaxanthin de-epoxidase [Cucumis melo var. makuwa] >TYK13688.1 violaxanthin de-epoxidase [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (485), Expect = 2.17e-56
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60
          MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA
Sbjct: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60

Query: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKL 95
          EANKNAAMTDTPVRIVAIVGEGSISPLKSTPW+++
Sbjct: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWEEV 95

[Close]
BLAST of MELO.jh100717.1 vs. NCBI nr
Match: XP_016902149.1 (PREDICTED: violaxanthin de-epoxidase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 191 bits (485), Expect = 5.78e-56
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60
          MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA
Sbjct: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60

Query: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKL 95
          EANKNAAMTDTPVRIVAIVGEGSISPLKSTPW+++
Sbjct: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWEEV 95

[Close]
BLAST of MELO.jh100717.1 vs. NCBI nr
Match: KAA0045902.1 (violaxanthin de-epoxidase [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (481), Expect = 8.51e-56
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60
          MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA
Sbjct: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60

Query: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKL 95
          EANKN AMTDTPVRIVAIVGEGSISPLKSTPW+++
Sbjct: 61 EANKNVAMTDTPVRIVAIVGEGSISPLKSTPWEEV 95

[Close]
BLAST of MELO.jh100717.1 vs. NCBI nr
Match: XP_008457909.1 (PREDICTED: violaxanthin de-epoxidase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 189 bits (481), Expect = 2.25e-55
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60
          MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA
Sbjct: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60

Query: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKL 95
          EANKN AMTDTPVRIVAIVGEGSISPLKSTPW+++
Sbjct: 61 EANKNVAMTDTPVRIVAIVGEGSISPLKSTPWEEV 95

[Close]
BLAST of MELO.jh100717.1 vs. NCBI nr
Match: QBB64262.1 (violaxanthin de-epoxidase-related protein [Cucumis sativus])

HSP 1 Score: 171 bits (432), Expect = 3.61e-48
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0 

Query: 1  MKVELYLN--SGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPV 60
          MKVEL  N  SGTSIGNGWPLNP+FHFFLSHRKPT+ PTLSMPSHRPTVSRRLLTVPPPV
Sbjct: 1  MKVELNFNFNSGTSIGNGWPLNPHFHFFLSHRKPTYFPTLSMPSHRPTVSRRLLTVPPPV 60

Query: 61 VAEANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKL 95
          VAEANKN AM DTPVRIVAIVGEGSISPLKSTPW+++
Sbjct: 61 VAEANKNMAMADTPVRIVAIVGEGSISPLKSTPWEEV 97

[Close]
BLAST of MELO.jh100717.1 vs. ExPASy TrEMBL
Match: A0A5D3CR73 (Violaxanthin de-epoxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002100 PE=4 SV=1)

HSP 1 Score: 191 bits (485), Expect = 1.05e-56
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60
          MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA
Sbjct: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60

Query: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKL 95
          EANKNAAMTDTPVRIVAIVGEGSISPLKSTPW+++
Sbjct: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWEEV 95

[Close]
BLAST of MELO.jh100717.1 vs. ExPASy TrEMBL
Match: A0A1S4E1P5 (violaxanthin de-epoxidase, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103497480 PE=4 SV=1)

HSP 1 Score: 191 bits (485), Expect = 2.80e-56
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60
          MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA
Sbjct: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60

Query: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKL 95
          EANKNAAMTDTPVRIVAIVGEGSISPLKSTPW+++
Sbjct: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWEEV 95

[Close]
BLAST of MELO.jh100717.1 vs. ExPASy TrEMBL
Match: A0A5A7TR80 (Violaxanthin de-epoxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004380 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 4.12e-56
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60
          MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA
Sbjct: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60

Query: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKL 95
          EANKN AMTDTPVRIVAIVGEGSISPLKSTPW+++
Sbjct: 61 EANKNVAMTDTPVRIVAIVGEGSISPLKSTPWEEV 95

[Close]
BLAST of MELO.jh100717.1 vs. ExPASy TrEMBL
Match: A0A1S3C790 (violaxanthin de-epoxidase, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103497481 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 1.09e-55
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60
          MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA
Sbjct: 1  MKVELYLNSGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPVVA 60

Query: 61 EANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKL 95
          EANKN AMTDTPVRIVAIVGEGSISPLKSTPW+++
Sbjct: 61 EANKNVAMTDTPVRIVAIVGEGSISPLKSTPWEEV 95

[Close]
BLAST of MELO.jh100717.1 vs. ExPASy TrEMBL
Match: A0A0A0LQ45 (VDE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G297200 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 1.75e-48
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = 0 

Query: 1  MKVELYLN--SGTSIGNGWPLNPNFHFFLSHRKPTHSPTLSMPSHRPTVSRRLLTVPPPV 60
          MKVEL  N  SGTSIGNGWPLNP+FHFFLSHRKPT+ PTLSMPSHRPTVSRRLLTVPPPV
Sbjct: 1  MKVELNFNFNSGTSIGNGWPLNPHFHFFLSHRKPTYFPTLSMPSHRPTVSRRLLTVPPPV 60

Query: 61 VAEANKNAAMTDTPVRIVAIVGEGSISPLKSTPWKKL 95
          VAEANKN AM DTPVRIVAIVGEGSISPLKSTPW+++
Sbjct: 61 VAEANKNMAMADTPVRIVAIVGEGSISPLKSTPWEEV 97

The following BLAST results are available for this feature:
BLAST of MELO.jh100717.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045901.12.17e-5696.84violaxanthin de-epoxidase [Cucumis melo var. makuwa] >TYK13688.1 violaxanthin de... [more]
XP_016902149.15.78e-5696.84PREDICTED: violaxanthin de-epoxidase, chloroplastic-like [Cucumis melo][more]
KAA0045902.18.51e-5695.79violaxanthin de-epoxidase [Cucumis melo var. makuwa][more]
XP_008457909.12.25e-5595.79PREDICTED: violaxanthin de-epoxidase, chloroplastic-like [Cucumis melo][more]
QBB64262.13.61e-4887.63violaxanthin de-epoxidase-related protein [Cucumis sativus][more]
BLAST of MELO.jh100717.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh100717.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CR731.05e-5696.84Violaxanthin de-epoxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S4E1P52.80e-5696.84violaxanthin de-epoxidase, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A5A7TR804.12e-5695.79Violaxanthin de-epoxidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A1S3C7901.09e-5595.79violaxanthin de-epoxidase, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A0A0LQ451.75e-4887.63VDE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G297200 PE=4 SV... [more]
BLAST of MELO.jh100717.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh100717.1.t1MELO.jh100717.1.t1mRNA