MELO.jh034595.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh034595.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr10: 3312769 .. 3313205 (+)
RNA-Seq ExpressionMELO.jh034595.1
SyntenyMELO.jh034595.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTCCTAACATTTTCACACCTGGGGCTTCGTCACTCAACCAAACCACTTGATTTCAGTGCCAATTTTGGGCCATTCCATTGAAGTTCATACTCTTGTAAGACCTTCATTCACCCATCTGATTCCATTTCCCCAATGACCCATTTCTCTCTTCTTCTCCTTCCAATGCTATGTCTTTGAGCCACCGCAATCGGGATTCTCTCCAAACTCCATGAATCATATCGCTCATGCAGTTCCAGCTTCATTTCTAGTCGATTTCCCGATGCCCCAGGTAGGTAAATGGCAAGGCCTCTTCATTTATTTTGAATACCAAGTTTTCCACTTCCAATTTGACCTTGAACTGAAGTTTAGGAGCTTTGGGTAGTGAAAATTCTCTGTTTGTAGTCTAGCATTCTCATTCTCACGGTTGATTTTCATTACCTATATATGAATTGTCTTT

mRNA sequence

GGTCCTAACATTTTCACACCTGGGGCTTCGTCACTCAACCAAACCACTTGATTTCAGTGCCAATTTTGGGCCATTCCATTGAAGTTCATACTCTTGTAAGACCTTCATTCACCCATCTGATTCCATTTCCCCAATGACCCATTTCTCTCTTCTTCTCCTTCCAATGCTATGTCTTTGAGCCACCGCAATCGGGATTCTCTCCAAACTCCATGAATCATATCGCTCATGCAGTTCCAGCTTCATTTCTAGTCGATTTCCCGATGCCCCAGGTAGGTAAATGGCAAGGCCTCTTCATTTATTTTGAATACCAAGTTTTCCACTTCCAATTTGACCTTGAACTGAAGTTTAGGAGCTTTGGGTAGTGAAAATTCTCTGTTTGTAGTCTAGCATTCTCATTCTCACGGTTGATTTTCATTACCTATATATGAATTGTCTTT

Coding sequence (CDS)

ATGAATCATATCGCTCATGCAGTTCCAGCTTCATTTCTAGTCGATTTCCCGATGCCCCAGGTAGGTAAATGGCAAGGCCTCTTCATTTATTTTGAATACCAAGTTTTCCACTTCCAATTTGACCTTGAACTGAAGTTTAGGAGCTTTGGGTAG

Protein sequence

MNHIAHAVPASFLVDFPMPQVGKWQGLFIYFEYQVFHFQFDLELKFRSFG
Homology
[Close]
BLAST of MELO.jh034595.1 vs. NCBI nr
Match: KAA0034330.1 (RING-H2 finger protein ATL46 [Cucumis melo var. makuwa] >TYK15589.1 RING-H2 finger protein ATL46 [Cucumis melo var. makuwa])

HSP 1 Score: 48.5 bits (114), Expect = 1.08e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0 

Query: 1  MNHIAHAVPASFLVDFPMPQVG 22
          MNHIAHAVPASFLVDFPMPQV 
Sbjct: 1  MNHIAHAVPASFLVDFPMPQVA 22

[Close]
BLAST of MELO.jh034595.1 vs. ExPASy TrEMBL
Match: A0A5D3CZH7 (RING-H2 finger protein ATL46 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00840 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.22e-05
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 0 

Query: 1  MNHIAHAVPASFLVDFPMPQVG 22
          MNHIAHAVPASFLVDFPMPQV 
Sbjct: 1  MNHIAHAVPASFLVDFPMPQVA 22

The following BLAST results are available for this feature:
BLAST of MELO.jh034595.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034330.11.08e-0495.45RING-H2 finger protein ATL46 [Cucumis melo var. makuwa] >TYK15589.1 RING-H2 fing... [more]
BLAST of MELO.jh034595.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh034595.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CZH75.22e-0595.45RING-H2 finger protein ATL46 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
BLAST of MELO.jh034595.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh034595.1.t1MELO.jh034595.1.t1mRNA