MELO.jh034459.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh034459.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr01: 25544788 .. 25545692 (-)
RNA-Seq ExpressionMELO.jh034459.1
SyntenyMELO.jh034459.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCAGTCTTCACCTCTTCGTCTGCAAACTCGGCATATCTCTTCGTCTTCATCACTTCGCCATTCCATCGTCACTCGCCATTCCATCGTCTTCATCACTTGAGTTTTTGGGAGGTGGGTGATTGAAACCCACTGTTTTGCTTCAAATCCGCCATTGAAACCCACCTCTTCAACCCCTCCAACCATTTTATTCTCTTTCAAGATGCTTCTATTTCCATCTTCTCCCCGTTGAGGTATTTTTGTTATGTTTTGTATCGAATCTGAGAAATCGCCCGTACGGTGTTTGTTGTAATGCATCTTTCTTTTTCTTGCAACTATTTAGAATTTAGGATTTGGATTTTCGATTATCTAATGTTTATAGGCTTGAAGTGGTTGAAAATTTGCAATGCTGGGAGAAAAACTCAATTGTGATGAAAAATTAGACAAGCCCACTAATGATTTTTTGGGGGGTTTCTTTATTTTTGTTTAGGTTGTGCTGCTAAAAGGTGCTAGGGAAAGAATTATGCTTCTGTGAGAATTTCTCCAGCCAATGTATGATGTATTTACTTTTGTTTAAATATGTAAAAGTGTGTTAAAAATGTAAAATACTGAATTCATTTGATGGTATTGGGAGGCGCTTGGTCATAAAACCGTAAAGGAATGCTTAGATGTCTTAAACTGATGCAAATATGAGCGTGTGTGGAACACTACTGATATTGCTATGATTCCGAAGGTGCATTCTCCACGTGTGGTGTTAGATTATCATAGGCCTATTATCTTTTGTAATGTGGTGTACGAAATTGTTTTGAAAGTAATTGTGAATTGTATGAAGCATATTTTACATCAGTTCATAATCTGAATCGCAATCAACTTTTGTTGTAGAGCTGACAATTTCAGATAACACAATCATTATTATTGATTCCAAAG

mRNA sequence

TCTCAGTCTTCACCTCTTCGTCTGCAAACTCGGCATATCTCTTCGTCTTCATCACTTCGCCATTCCATCGTCACTCGCCATTCCATCGTCTTCATCACTTGAGTTTTTGGGAGGTGGGTGATTGAAACCCACTGTTTTGCTTCAAATCCGCCATTGAAACCCACCTCTTCAACCCCTCCAACCATTTTATTCTCTTTCAAGATGCTTCTATTTCCATCTTCTCCCCGTTGAGGTTGTGCTGCTAAAAGGTGCTAGGGAAAGAATTATGCTTCTGTGAGAATTTCTCCAGCCAATGTATGATGTATTTACTTTTGTTTAAATATGTAAAAGTGTGTTAAAAATGTAAAATACTGAATTCATTTGATGGTATTGGGAGGCGCTTGGTCATAAAACCGTAAAGGAATGCTTAGATGTCTTAAACTGATGCAAATATGAGCGTGTGTGGAACACTACTGATATTGCTATGATTCCGAAGGTGCATTCTCCACGTGTGGTGTTAGATTATCATAGGCCTATTATCTTTTGTAATGTGGTGTACGAAATTGTTTTGAAAGTAATTGTGAATTGTATGAAGCATATTTTACATCAGTTCATAATCTGAATCGCAATCAACTTTTGTTGTAGAGCTGACAATTTCAGATAACACAATCATTATTATTGATTCCAAAG

Coding sequence (CDS)

ATGATTCCGAAGGTGCATTCTCCACGTGTGGTGTTAGATTATCATAGGCCTATTATCTTTTGTAATGTGGTGTACGAAATTGTTTTGAAAGTAATTGTGAATTGTATGAAGCATATTTTACATCAGTTCATAATCTGA

Protein sequence

MIPKVHSPRVVLDYHRPIIFCNVVYEIVLKVIVNCMKHILHQFII
Homology
[Close]
BLAST of MELO.jh034459.1 vs. NCBI nr
Match: KAF5445283.1 (hypothetical protein F2P56_034346 [Juglans regia])

HSP 1 Score: 47.0 bits (110), Expect = 3.05e-04
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 1   MIPKVHSPRVVLDYHRPIIFCNVVYEIVLKVIVNCMKHILHQFI 44
           +IPKV SP  V+DY RPI  CNV+Y++V K + N +KHIL Q I
Sbjct: 251 LIPKVQSPTRVVDY-RPISLCNVLYKVVSKTMANRLKHILPQII 293

[Close]
BLAST of MELO.jh034459.1 vs. NCBI nr
Match: XP_024041921.1 (uncharacterized protein LOC112099052 [Citrus clementina])

HSP 1 Score: 47.0 bits (110), Expect = 3.05e-04
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0 

Query: 1   MIPKVHSPRVVLDYHRPIIFCNVVYEIVLKVIVNCMKHILHQFI 44
           +IPK   PR V D+ RPI  CNV+Y IV K I N +KH++H+ I
Sbjct: 243 LIPKKEKPRKVTDF-RPISLCNVIYRIVAKAIANRLKHVMHKII 285

[Close]
BLAST of MELO.jh034459.1 vs. NCBI nr
Match: KAF5454628.1 (hypothetical protein F2P56_024278 [Juglans regia])

HSP 1 Score: 46.2 bits (108), Expect = 5.71e-04
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 1   MIPKVHSPRVVLDYHRPIIFCNVVYEIVLKVIVNCMKHILHQFI 44
           +IPKV SP  V+DY RPI  CNV+Y++V K + N +KHIL Q I
Sbjct: 323 LIPKVQSPTRVVDY-RPISLCNVLYKVVSKSMANRLKHILPQII 365

[Close]
BLAST of MELO.jh034459.1 vs. NCBI nr
Match: XP_035551717.1 (uncharacterized protein LOC108993820 [Juglans regia])

HSP 1 Score: 46.2 bits (108), Expect = 5.72e-04
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 1   MIPKVHSPRVVLDYHRPIIFCNVVYEIVLKVIVNCMKHILHQFI 44
           +IPKV SP  V+DY RPI  CNV+Y++V K + N +KHIL Q I
Sbjct: 354 LIPKVQSPTRVVDY-RPISLCNVLYKVVSKSMANRLKHILPQII 396

[Close]
BLAST of MELO.jh034459.1 vs. NCBI nr
Match: XP_024043257.1 (uncharacterized protein LOC112099952 [Citrus clementina])

HSP 1 Score: 46.2 bits (108), Expect = 5.72e-04
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 1   MIPKVHSPRVVLDYHRPIIFCNVVYEIVLKVIVNCMKHILHQ 42
           +IPK   P+ V D+ RPI  CNV+Y IV K I N +KHILHQ
Sbjct: 396 LIPKNFKPQRVSDF-RPISLCNVIYRIVAKTIANRLKHILHQ 436

[Close]
BLAST of MELO.jh034459.1 vs. ExPASy TrEMBL
Match: A0A6P9FAS6 (uncharacterized protein LOC108993820 OS=Juglans regia OX=51240 GN=LOC108993820 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.77e-04
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 1   MIPKVHSPRVVLDYHRPIIFCNVVYEIVLKVIVNCMKHILHQFI 44
           +IPKV SP  V+DY RPI  CNV+Y++V K + N +KHIL Q I
Sbjct: 354 LIPKVQSPTRVVDY-RPISLCNVLYKVVSKSMANRLKHILPQII 396

[Close]
BLAST of MELO.jh034459.1 vs. ExPASy TrEMBL
Match: A0A2K3MVI6 (Reverse transcriptase domain-containing protein OS=Trifolium pratense OX=57577 GN=L195_g017967 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.09e-04
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 0 

Query: 1   MIPKVHSPRVVLDYHRPIIFCNVVYEIVLKVIVNCMKHILHQ 42
           +IPKV  P  V  + RPI  CNV Y+I+ KVIVN +K+I+HQ
Sbjct: 467 LIPKVDKPEFVSQF-RPISLCNVSYKIITKVIVNRLKYIIHQ 507

[Close]
BLAST of MELO.jh034459.1 vs. ExPASy TrEMBL
Match: A0A2I4EK52 (uncharacterized protein LOC108990305 OS=Juglans regia OX=51240 GN=LOC108990305 PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.10e-04
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 1   MIPKVHSPRVVLDYHRPIIFCNVVYEIVLKVIVNCMKHILHQFI 44
           +IPK+ SP+ VLD+ RPI  CNV+Y+IV KV+ N +K IL Q I
Sbjct: 434 LIPKLKSPQTVLDF-RPISLCNVLYKIVSKVLSNRLKSILPQII 476

[Close]
BLAST of MELO.jh034459.1 vs. ExPASy TrEMBL
Match: A0A2N9EV70 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10579 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.73e-04
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 0 

Query: 1   MIPKVHSPRVVLDYHRPIIFCNVVYEIVLKVIVNCMKHILHQ 42
           +IPKV SP  V D+ RPI  CNV+Y++V KV+VN +K IL Q
Sbjct: 642 LIPKVKSPEKVTDF-RPISLCNVIYKLVAKVLVNRLKLILPQ 682

The following BLAST results are available for this feature:
BLAST of MELO.jh034459.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5445283.13.05e-0456.82hypothetical protein F2P56_034346 [Juglans regia][more]
XP_024041921.13.05e-0452.27uncharacterized protein LOC112099052 [Citrus clementina][more]
KAF5454628.15.71e-0456.82hypothetical protein F2P56_024278 [Juglans regia][more]
XP_035551717.15.72e-0456.82uncharacterized protein LOC108993820 [Juglans regia][more]
XP_024043257.15.72e-0457.14uncharacterized protein LOC112099952 [Citrus clementina][more]
BLAST of MELO.jh034459.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh034459.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P9FAS62.77e-0456.82uncharacterized protein LOC108993820 OS=Juglans regia OX=51240 GN=LOC108993820 P... [more]
A0A2K3MVI67.09e-0454.76Reverse transcriptase domain-containing protein OS=Trifolium pratense OX=57577 G... [more]
A0A2I4EK527.10e-0456.82uncharacterized protein LOC108990305 OS=Juglans regia OX=51240 GN=LOC108990305 P... [more]
A0A2N9EV709.73e-0457.14Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10579 PE=4 SV=1[more]
BLAST of MELO.jh034459.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh034459.1.t1MELO.jh034459.1.t1mRNA