MELO.jh034200.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh034200.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationscaffold_mitochondria: 678810 .. 679473 (-)
RNA-Seq ExpressionMELO.jh034200.1
SyntenyMELO.jh034200.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCCGAAAGGCGAAACTCTCGTCTCCGTTTGGCGACCGCTACGTGGGGGGCGGACACCTTTTTTTGTTATCTAAAGGCTTTGACTCTGAAGTGGGCTTTGACTCGGCCCAGCGGGCGAGGCGGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCTCAGCACTTGAGAGTGTGCGCTTTCGTTTTCGAATGTCTCGTTCAGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTGAGTAGGGGTCCCGAGAGAGCGTACCGCCATAGTCGTGAGTCTGTTTATAGTCGCGACTCTTGTCATAGTGAACAAGGTTGAAACTTCCAGGAAAAAACTTCTTTTTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTTCTTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGC

mRNA sequence

GGCCGAAAGGCGAAACTCTCGTCTCCGTTTGGCGACCGCTACGTGGGGGGCGGACACCTTTTTTTGTTATCTAAAGGCTTTGACTCTGAAGTGGGCTTTGACTCGGCCCAGCGGGCGAGGCGGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCTCAGCACTTGAGAGTGTGCGCTTTCGTTTTCGAATGTCTCGTTCAGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTGAGTAGGGGTCCCGAGAGAGCGTACCGCCATAGTCGTGAGTCTGTTTATAGTCGCGACTCTTGTCATAGTGAACAAGGTTGAAACTTCCAGGAAAAAACTTCTTTTTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTTCTTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGC

Coding sequence (CDS)

ATGTCTCGTTCAGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTGAGTAGGGGTCCCGAGAGAGCGTACCGCCATAGTCGTGAGTCTGTTTATAGTCGCGACTCTTGTCATAGTGAACAAGGTTGA

Protein sequence

MSRSASRVYKPFSFQCSPLSRGPERAYRHSRESVYSRDSCHSEQG
Homology
[Close]
BLAST of MELO.jh034200.1 vs. NCBI nr
Match: KAA0050801.1 (hypothetical protein E6C27_scaffold404G00540 [Cucumis melo var. makuwa] >TYK08544.1 hypothetical protein E5676_scaffold323G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 1.74e-16
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 4   SASRVYKPFSFQCSPLSRGPERAYRHSRESVYSRDSCHSEQG 45
           +ASRVYKPFSFQC PLSRG ERAYRH+RE VYS DSCHSEQG
Sbjct: 79  AASRVYKPFSFQCLPLSRGLERAYRHTREFVYSHDSCHSEQG 120

[Close]
BLAST of MELO.jh034200.1 vs. NCBI nr
Match: GEW38831.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 60.5 bits (145), Expect = 1.38e-09
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 1   MSRSASRVYKPFSFQCSP---------------LSRGPERAYRHSRESVYSRDSCHSEQG 45
           MSRSASRVYKPFSFQCSP               ++R       HSRESVYSRD CHS+QG
Sbjct: 118 MSRSASRVYKPFSFQCSPFESSVGAFSLLIRVGVAREQSVPPCHSRESVYSRDCCHSQQG 177

[Close]
BLAST of MELO.jh034200.1 vs. ExPASy TrEMBL
Match: A0A5D3CBD6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00860 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.41e-17
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 4   SASRVYKPFSFQCSPLSRGPERAYRHSRESVYSRDSCHSEQG 45
           +ASRVYKPFSFQC PLSRG ERAYRH+RE VYS DSCHSEQG
Sbjct: 79  AASRVYKPFSFQCLPLSRGLERAYRHTREFVYSHDSCHSEQG 120

The following BLAST results are available for this feature:
BLAST of MELO.jh034200.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050801.11.74e-1685.71hypothetical protein E6C27_scaffold404G00540 [Cucumis melo var. makuwa] >TYK0854... [more]
GEW38831.11.38e-0956.67hypothetical protein [Tanacetum cinerariifolium][more]
BLAST of MELO.jh034200.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh034200.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CBD68.41e-1785.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO.jh034200.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh034200.1.t1MELO.jh034200.1.t1mRNA