MELO.jh033743.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh033743.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Copia-like protein
Location	chr08: 31816854 .. 31818795 (+)
RNA-Seq Expression	MELO.jh033743.1
Synteny	MELO.jh033743.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCTCTCAGACCAAGCACAAAGGTGCCATTAGCAAGCAGTACTCAACGCCACAAAGGTGACGAAACTTCTGCTGCATCAATTCAAATTTGTCCTCATCGAGCAAAACATAACCGAGGGAGACAACCAGTGGAAAGGAACAAGGAAAGCATCTGTTCTTCTCAGCAAAAATCAGCAAAATCAGTATCAATTTAAAACTGTTCTTTTCTTTGTTATTTTTCTCTCTGGATTACATTTCTGCTACCAGCAACTTAACATGATCGAAAACAACAAAATCACCACATATATCCTCACTGGTAACAATAACTACGTACCATGGGCCAGATCTGTGGAAATAGGCTTAGGGGGTAAGGGTAAAAGGTCATTCATTAATGGATCCAAAGGAAAACCAAAACCAAAAGACCAAGCCAACCCTACTGATGATGAACTAACAGCCATAGAAAATTGGGAGACCACAGATCAGATGATCATGTCGTGGCTCTTAAGCACAATGGACACTAAAATCTCTAGTGCTCTTATGTACTGTAAAACCTCAAAGGAAATCTGGACAAAAGCCAAAACCCGATATGGTCAAGGAAAAAACTTCGCACATATTTTTTCATTAAAACAAGAACTTTCCAACATCAAACAAGGCAACCTCAATAACTCAGACCTAGTGGCCGAAATACTGACCAAATGGGAAGAGTTACAGATGTATCTCCCAGAAACAATAAATCCAGAGGAAATTTACAAAAGAAACGAACATGAATTAATTTATACTTATCTCGGGGCTTTAGATTCCAGTTTTGAACCCATTCGGGCTCAAATTCTCTCATCGGCAGAAATGCCACAGTTTGATGATGTAGTTCTCAAGATTGAGCAGGAGGAATCAAGAAGACGGCTCATGAATCCGTCGCCAGCTCCATCAACAGACAACCAAGCATTTCGCGCAACCTACAACAAGGACAGAGGAAAGGGGAACTTGTGGTGTGATCATTGCAAACGATCGAGTCACAACAAGGAGAGTTGCTGGGTTCTTCATCCGCATCTCAAGCCCCAACGCAAAGGTGGCGGAAGTACCAACAACGGCGGGTGGCGCCGAGAGGCACATTCCGCCATAGGAGAACTCAACAGCGGGACAAATACGAAGGCTGACTTCGGGATGAATGGGATGAACCCTAATCCCTCTCAAGGGCCAGCTGATCACGGGCCACCAGGCTTCTATGGAACGACTGCTGCTGGGCCAGTGCAAGACCCAATCTCCTTTGTCACGCCTGCTGGGCCTTCCGGACCTAATTCGGATCAACTCATGCAGCTGGTTAACCAATTAAATCAACTACTTCAGCCGAGGCAACAGAACTCAGGTTTATCTGAACTCAAACTTTCAAATAATTCAATATACTTGAATAAGCATGACTCAAATTGGATTATTGATTCGGGAGCAACGCATCACATGTCATGTAGTCCAAACAATTTTTTAAACTTGATAACCTCCAATGAACCACAATTTGTCACAACTGCTAATGGTGGTCAGACCAAAATTTTCGGTACCGGAACCATTTCTGTTTTTAACAAACCAGTCAATGAGGTTTTGTATCTACCTGATTTTCACTCTAATTTATTATCTGTTAATAAGATTGTCAAAGATCTTAATTGTGCTGTAATATTCTTACCAGAAAAAGTGATTTTTCAGGACATAGTCTCAGGGGAGATGATTGGTGAAGGAATTCTTAGGAACGGGCTATATTATCTTCAACAAAATAATAAATGCTTTGTATCAAGTAAAAACACTGATCGTGGACATTTATTGCATTTAAGATTTGGCCATCCATCTGATCAGGTTTTGAATAGACTTTTTCATTATAATTATGATTCCTTTAGTTGTGATACTTGTAGATTTGCAAAACAAACTCGTTTACCTTTTCCTACTTCCATAACTAAAGTAGAAAAATGTTTTGATTTAA

mRNA sequence

AAGCTCTCAGACCAAGCACAAAGGTGCCATTAGCAAGCAGTACTCAACGCCACAAAGGTGACGAAACTTCTGCTGCATCAATTCAAATTTGTCCTCATCGAGCAAAACATAACCGAGGGAGACAACCAGTGGAAAGGAACAAGGAAAGCATCTGTTCTTCTCAGCAAAAATCAGCAAAATCAGTATCAATTTAAAACTGTTCTTTTCTTTGTTATTTTTCTCTCTGGATTACATTTCTGCTACCAGCAACTTAACATGATCGAAAACAACAAAATCACCACATATATCCTCACTGGTAACAATAACTACGTACCATGGGCCAGATCTGTGGAAATAGGCTTAGGGGGTAAGGGTAAAAGGTCATTCATTAATGGATCCAAAGGAAAACCAAAACCAAAAGACCAAGCCAACCCTACTGATGATGAACTAACAGCCATAGAAAATTGGGAGACCACAGATCAGATGATCATGTCGTGGCTCTTAAGCACAATGGACACTAAAATCTCTAGTGCTCTTATGTACTGTAAAACCTCAAAGGAAATCTGGACAAAAGCCAAAACCCGATATGGTCAAGGAAAAAACTTCGCACATATTTTTTCATTAAAACAAGAACTTTCCAACATCAAACAAGGCAACCTCAATAACTCAGACCTAGTGGCCGAAATACTGACCAAATGGGAAGAGTTACAGATGTATCTCCCAGAAACAATAAATCCAGAGGAAATTTACAAAAGAAACGAACATGAATTAATTTATACTTATCTCGGGGCTTTAGATTCCAGTTTTGAACCCATTCGGGCTCAAATTCTCTCATCGGCAGAAATGCCACAGTTTGATGATGTAGTTCTCAAGATTGAGCAGGAGGAATCAAGAAGACGGCTCATGAATCCGTCGCCAGCTCCATCAACAGACAACCAAGCATTTCGCGCAACCTACAACAAGGACAGAGGAAAGGGGAACTTGTGGTGTGATCATTGCAAACGATCGAGTCACAACAAGGAGAGTTGCTGGGTTCTTCATCCGCATCTCAAGCCCCAACGCAAAGGTGGCGGAAGTACCAACAACGGCGGGTGGCGCCGAGAGGCACATTCCGCCATAGGAGAACTCAACAGCGGGACAAATACGAAGGCTGACTTCGGGATGAATGGGATGAACCCTAATCCCTCTCAAGGGCCAGCTGATCACGGGCCACCAGGCTTCTATGGAACGACTGCTGCTGGGCCAGTGCAAGACCCAATCTCCTTTGTCACGCCTGCTGGGCCTTCCGGACCTAATTCGGATCAACTCATGCAGCTGGTTAACCAATTAAATCAACTACTTCAGCCGAGGCAACAGAACTCAGGACATAGTCTCAGGGGAGATGATTGGTGAAGGAATTCTTAGGAACGGGCTATATTATCTTCAACAAAATAATAAATGCTTTGTATCAAGTAAAAACACTGATCGTGGACATTTATTGCATTTAAGATTTGGCCATCCATCTGATCAGGTTTTGAATAGACTTTTTCATTATAATTATGATTCCTTTAGTTGTGATACTTGTAGATTTGCAAAACAAACTCGTTTACCTTTTCCTACTTCCATAACTAAAGTAGAAAAATGTTTTGATTTAA

Coding sequence (CDS)

ATGATCGAAAACAACAAAATCACCACATATATCCTCACTGGTAACAATAACTACGTACCATGGGCCAGATCTGTGGAAATAGGCTTAGGGGGTAAGGGTAAAAGGTCATTCATTAATGGATCCAAAGGAAAACCAAAACCAAAAGACCAAGCCAACCCTACTGATGATGAACTAACAGCCATAGAAAATTGGGAGACCACAGATCAGATGATCATGTCGTGGCTCTTAAGCACAATGGACACTAAAATCTCTAGTGCTCTTATGTACTGTAAAACCTCAAAGGAAATCTGGACAAAAGCCAAAACCCGATATGGTCAAGGAAAAAACTTCGCACATATTTTTTCATTAAAACAAGAACTTTCCAACATCAAACAAGGCAACCTCAATAACTCAGACCTAGTGGCCGAAATACTGACCAAATGGGAAGAGTTACAGATGTATCTCCCAGAAACAATAAATCCAGAGGAAATTTACAAAAGAAACGAACATGAATTAATTTATACTTATCTCGGGGCTTTAGATTCCAGTTTTGAACCCATTCGGGCTCAAATTCTCTCATCGGCAGAAATGCCACAGTTTGATGATGTAGTTCTCAAGATTGAGCAGGAGGAATCAAGAAGACGGCTCATGAATCCGTCGCCAGCTCCATCAACAGACAACCAAGCATTTCGCGCAACCTACAACAAGGACAGAGGAAAGGGGAACTTGTGGTGTGATCATTGCAAACGATCGAGTCACAACAAGGAGAGTTGCTGGGTTCTTCATCCGCATCTCAAGCCCCAACGCAAAGGTGGCGGAAGTACCAACAACGGCGGGTGGCGCCGAGAGGCACATTCCGCCATAGGAGAACTCAACAGCGGGACAAATACGAAGGCTGACTTCGGGATGAATGGGATGAACCCTAATCCCTCTCAAGGGCCAGCTGATCACGGGCCACCAGGCTTCTATGGAACGACTGCTGCTGGGCCAGTGCAAGACCCAATCTCCTTTGTCACGCCTGCTGGGCCTTCCGGACCTAATTCGGATCAACTCATGCAGCTGGTTAACCAATTAAATCAACTACTTCAGCCGAGGCAACAGAACTCAGGACATAGTCTCAGGGGAGATGATTGGTGA

Protein sequence

MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTAIENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQELSNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPIRAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDHCKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMNPNPSQGPADHGPPGFYGTTAAGPVQDPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQNSGHSLRGDDW

Homology

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BLAST of MELO.jh033743.1 vs. NCBI nr
Match: TYK00722.1 (copia-like protein [Cucumis melo var. makuwa] >TYK25285.1 copia-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 740 bits (1910), Expect = 4.91e-260
Identity = 364/365 (99.73%), Postives = 364/365 (99.73%), Query Frame = 0


Query: 1   MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA 60
           MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA
Sbjct: 1   MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA 60

Query: 61  IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL 120
           IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL
Sbjct: 61  IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL 120

Query: 121 SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI 180
           SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI
Sbjct: 121 SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI 180

Query: 181 RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH 240
           RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH
Sbjct: 181 RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH 240

Query: 241 CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN 300
           CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN
Sbjct: 241 CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN 300

Query: 301 PNPSQGPADHGPPGFYGTTAAGPVQDPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ 360
           PNPSQGPADHGPPGFYGTTAAGPVQDPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ
Sbjct: 301 PNPSQGPADHGPPGFYGTTAAGPVQDPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ 360

Query: 361 NSGHS 365
           NSG S
Sbjct: 361 NSGLS 365

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BLAST of MELO.jh033743.1 vs. NCBI nr
Match: KAA0036222.1 (copia-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 734 bits (1896), Expect = 2.21e-259
Identity = 361/362 (99.72%), Postives = 361/362 (99.72%), Query Frame = 0


Query: 1   MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA 60
           MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA
Sbjct: 1   MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA 60

Query: 61  IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL 120
           IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL
Sbjct: 61  IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL 120

Query: 121 SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI 180
           SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI
Sbjct: 121 SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI 180

Query: 181 RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH 240
           RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH
Sbjct: 181 RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH 240

Query: 241 CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN 300
           CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN
Sbjct: 241 CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN 300

Query: 301 PNPSQGPADHGPPGFYGTTAAGPVQDPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ 360
           PNPSQGPADHGPPGFYGTTAAGPVQ PISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ
Sbjct: 301 PNPSQGPADHGPPGFYGTTAAGPVQGPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ 360

Query: 361 NS 362
           NS
Sbjct: 361 NS 362

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BLAST of MELO.jh033743.1 vs. NCBI nr
Match: XP_021808903.1 (uncharacterized protein LOC110752531 [Prunus avium])

HSP 1 Score: 187 bits (475), Expect = 6.60e-52
Identity = 94/260 (36.15%), Postives = 153/260 (58.85%), Query Frame = 0


Query: 11  ILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTAIENWETTDQM 70
           +L    NY+PW+R+V + LGG+ K  FING+   P   D            E+W   DQ+
Sbjct: 26  VLLNGFNYIPWSRAVSLALGGRSKLGFINGNIPAPAVDDPK---------YEDWFCKDQL 85

Query: 71  IMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQELSNIKQGNLNN 130
           +MSWLL++M+ +++    +  +++ +WT  K  YG   N A IF LK++++ + Q   + 
Sbjct: 86  VMSWLLNSMEPQVAEIFSFSDSAQHLWTAVKEMYGNQNNAARIFQLKKDIAGVNQDGKSF 145

Query: 131 SDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPIRAQILSSAEM 190
            + + ++   W EL +Y P TI+   + KR E + I+  L +LD ++E +R+ IL SAEM
Sbjct: 146 IEHLGKLKGMWNELDLYRPHTIDSATLLKRAEEDKIFQLLASLDPNYEDLRSHILMSAEM 205

Query: 191 PQFDDVVLKIEQEESRRRLMN---PSPAPSTDNQAF------RATYNKDRGKGNLWCDHC 250
           P F+ V   I++EE R+++MN    S A S++++AF      +A+ N    KGNL C +C
Sbjct: 206 PSFNTVCTTIQREEVRKKVMNVETKSGAGSSESKAFVAGAKKQASKNFKGKKGNLECSYC 265

Query: 251 KRSSHNKESCWVLHPHLKPQ 261
           ++  H K+ CW+LHPHLKP+
Sbjct: 266 EQKGHTKDRCWILHPHLKPK 276

[Close]

BLAST of MELO.jh033743.1 vs. NCBI nr
Match: XP_018497906.1 (PREDICTED: uncharacterized protein LOC108865503 [Pyrus x bretschneideri])

HSP 1 Score: 183 bits (464), Expect = 3.20e-50
Identity = 95/263 (36.12%), Postives = 151/263 (57.41%), Query Frame = 0


Query: 2   IENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTAI 61
           +  N+  + ++    NY+PW+R+V + LGG+ K  FINGS   P   D ++P        
Sbjct: 27  VNPNQRLSSVVLNEFNYLPWSRAVSLALGGRSKLGFINGSFKIP---DASSPN------Y 86

Query: 62  ENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQELS 121
           E+W + DQ++MSWLL++MD K++    Y ++S ++W   K  YG   N A +F LK+++S
Sbjct: 87  ESWLSKDQLVMSWLLNSMDRKLAEIFSYSESSYQLWEAVKEMYGNQNNVARVFKLKKDIS 146

Query: 122 NIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPIR 181
           +++Q       L+  + + W EL++Y P T +   + KR E + I+  L +LDS++E +R
Sbjct: 147 DLQQDGKPFVQLLGSMKSMWNELEIYRPHTTDATLLRKRAEEDKIFQLLSSLDSTYEDLR 206

Query: 182 AQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKG---NLWC 241
             IL + E+P F  V + I++EE RR++MN     S        T N+ R KG   NL C
Sbjct: 207 CHILMNTELPSFTSVCVTIQREEVRRKVMNIGTTTSVPEARAYIT-NEKRYKGKHPNLKC 266

Query: 242 DHCKRSSHNKESCWVLHPHLKPQ 261
            HC    H K++CW+LHP LKP+
Sbjct: 267 QHCNNIGHVKDTCWILHPELKPE 279

[Close]

BLAST of MELO.jh033743.1 vs. NCBI nr
Match: XP_018506028.1 (PREDICTED: uncharacterized protein LOC108868128 [Pyrus x bretschneideri])

HSP 1 Score: 182 bits (461), Expect = 8.85e-50
Identity = 96/263 (36.50%), Postives = 151/263 (57.41%), Query Frame = 0


Query: 2   IENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTAI 61
           +  N+  + ++    NY+PW+R+V + LGG+ K  FINGS   P   D ++P        
Sbjct: 27  VNPNQRLSSVVLNEFNYLPWSRAVSLALGGRSKLGFINGSFKIP---DASSPN------Y 86

Query: 62  ENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQELS 121
           E+W + DQ++MSWLL++MD K++    Y ++S ++W   K  YG   N A +F LK+++S
Sbjct: 87  ESWLSKDQLVMSWLLNSMDRKLAEIFSYSESSYQLWEAVKEMYGSQNNAAWVFQLKKDIS 146

Query: 122 NIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPIR 181
           +++Q       L+  + + W EL++Y P TI+   + KR E + I+  L +LDS++E +R
Sbjct: 147 DLQQDGKPFVQLLGSMKSMWNELEIYRPHTIDAALLRKRAEEDKIFQLLSSLDSTYEDLR 206

Query: 182 AQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKG---NLWC 241
             IL + E+P F  V   I++EE RR++MN     S        T N+ R KG   NL C
Sbjct: 207 CHILMNTELPFFTSVCATIQREEVRRKVMNIGTTTSVPEARAYIT-NEKRYKGKHPNLKC 266

Query: 242 DHCKRSSHNKESCWVLHPHLKPQ 261
            HC    H K++CW+LHP LKP+
Sbjct: 267 QHCNNIGHVKDTCWILHPELKPE 279

[Close]

BLAST of MELO.jh033743.1 vs. ExPASy TrEMBL
Match: A0A5D3DP15 (Copia-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00090 PE=4 SV=1)

HSP 1 Score: 740 bits (1910), Expect = 2.38e-260
Identity = 364/365 (99.73%), Postives = 364/365 (99.73%), Query Frame = 0


Query: 1   MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA 60
           MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA
Sbjct: 1   MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA 60

Query: 61  IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL 120
           IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL
Sbjct: 61  IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL 120

Query: 121 SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI 180
           SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI
Sbjct: 121 SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI 180

Query: 181 RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH 240
           RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH
Sbjct: 181 RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH 240

Query: 241 CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN 300
           CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN
Sbjct: 241 CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN 300

Query: 301 PNPSQGPADHGPPGFYGTTAAGPVQDPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ 360
           PNPSQGPADHGPPGFYGTTAAGPVQDPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ
Sbjct: 301 PNPSQGPADHGPPGFYGTTAAGPVQDPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ 360

Query: 361 NSGHS 365
           NSG S
Sbjct: 361 NSGLS 365

[Close]

BLAST of MELO.jh033743.1 vs. ExPASy TrEMBL
Match: A0A5A7SYC4 (Copia-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18G00190 PE=4 SV=1)

HSP 1 Score: 734 bits (1896), Expect = 1.07e-259
Identity = 361/362 (99.72%), Postives = 361/362 (99.72%), Query Frame = 0


Query: 1   MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA 60
           MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA
Sbjct: 1   MIENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTA 60

Query: 61  IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL 120
           IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL
Sbjct: 61  IENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQEL 120

Query: 121 SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI 180
           SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI
Sbjct: 121 SNIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPI 180

Query: 181 RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH 240
           RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH
Sbjct: 181 RAQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGNLWCDH 240

Query: 241 CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN 300
           CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN
Sbjct: 241 CKRSSHNKESCWVLHPHLKPQRKGGGSTNNGGWRREAHSAIGELNSGTNTKADFGMNGMN 300

Query: 301 PNPSQGPADHGPPGFYGTTAAGPVQDPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ 360
           PNPSQGPADHGPPGFYGTTAAGPVQ PISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ
Sbjct: 301 PNPSQGPADHGPPGFYGTTAAGPVQGPISFVTPAGPSGPNSDQLMQLVNQLNQLLQPRQQ 360

Query: 361 NS 362
           NS
Sbjct: 361 NS 362

[Close]

BLAST of MELO.jh033743.1 vs. ExPASy TrEMBL
Match: A0A6P5S547 (uncharacterized protein LOC110752531 OS=Prunus avium OX=42229 GN=LOC110752531 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 3.19e-52
Identity = 94/260 (36.15%), Postives = 153/260 (58.85%), Query Frame = 0


Query: 11  ILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTAIENWETTDQM 70
           +L    NY+PW+R+V + LGG+ K  FING+   P   D            E+W   DQ+
Sbjct: 26  VLLNGFNYIPWSRAVSLALGGRSKLGFINGNIPAPAVDDPK---------YEDWFCKDQL 85

Query: 71  IMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQELSNIKQGNLNN 130
           +MSWLL++M+ +++    +  +++ +WT  K  YG   N A IF LK++++ + Q   + 
Sbjct: 86  VMSWLLNSMEPQVAEIFSFSDSAQHLWTAVKEMYGNQNNAARIFQLKKDIAGVNQDGKSF 145

Query: 131 SDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPIRAQILSSAEM 190
            + + ++   W EL +Y P TI+   + KR E + I+  L +LD ++E +R+ IL SAEM
Sbjct: 146 IEHLGKLKGMWNELDLYRPHTIDSATLLKRAEEDKIFQLLASLDPNYEDLRSHILMSAEM 205

Query: 191 PQFDDVVLKIEQEESRRRLMN---PSPAPSTDNQAF------RATYNKDRGKGNLWCDHC 250
           P F+ V   I++EE R+++MN    S A S++++AF      +A+ N    KGNL C +C
Sbjct: 206 PSFNTVCTTIQREEVRKKVMNVETKSGAGSSESKAFVAGAKKQASKNFKGKKGNLECSYC 265

Query: 251 KRSSHNKESCWVLHPHLKPQ 261
           ++  H K+ CW+LHPHLKP+
Sbjct: 266 EQKGHTKDRCWILHPHLKPK 276

[Close]

BLAST of MELO.jh033743.1 vs. ExPASy TrEMBL
Match: A0A5N5FSZ2 (Retrotran_gag_3 domain-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_005734 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 2.32e-48
Identity = 88/261 (33.72%), Postives = 151/261 (57.85%), Query Frame = 0


Query: 2   IENNKITTYILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTAI 61
           +  N+  + ++    NY+ W+R+V + LGG+ K  FINGS   P+            +  
Sbjct: 27  VNPNQRLSSVVLNEFNYLSWSRAVSLALGGRSKLGFINGSIKVPEASS---------SNY 86

Query: 62  ENWETTDQMIMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQELS 121
           E+W + DQ++MSWLL++M+ K++    Y K+S ++W   K  YG   N A +F LK+++S
Sbjct: 87  ESWLSKDQLVMSWLLNSMERKLAEIFSYSKSSYQLWEAVKEMYGSQNNVARVFQLKKDIS 146

Query: 122 NIKQGNLNNSDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPIR 181
           +++Q       L+  + T W EL+ Y P T +   + KR + + I+  L +LDS++E +R
Sbjct: 147 DLQQDGKPFVQLLGSMKTMWNELETYRPHTTDAVLLRKRAKEDKIFQLLSSLDSTYEDLR 206

Query: 182 AQILSSAEMPQFDDVVLKIEQEESRRRLMNPSPAPST-DNQAFRATYNKDRGKG-NLWCD 241
             +L + E+P F  V   I++EE RR++MN S  P+  +++A+     + +GK  +L C 
Sbjct: 207 CHMLMNTELPSFPSVCATIQREEVRRKVMNMSTMPNVPESRAYVTNERRYKGKHPHLKCQ 266

Query: 242 HCKRSSHNKESCWVLHPHLKP 260
           HC  + H +++CW+LHP LKP
Sbjct: 267 HCNNTGHVRDTCWILHPELKP 278

[Close]

BLAST of MELO.jh033743.1 vs. ExPASy TrEMBL
Match: A0A6P5TI76 (uncharacterized protein LOC110767548 isoform X3 OS=Prunus avium OX=42229 GN=LOC110767548 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 8.96e-48
Identity = 90/254 (35.43%), Postives = 141/254 (55.51%), Query Frame = 0


Query: 11  ILTGNNNYVPWARSVEIGLGGKGKRSFINGSKGKPKPKDQANPTDDELTAIENWETTDQM 70
           +L    NY+PW+R+V + LGGK K  FING    P         DD     E W + DQ+
Sbjct: 33  VLLNGFNYIPWSRAVTLALGGKSKLGFINGKNPAP---------DDGDPKFEEWLSKDQL 92

Query: 71  IMSWLLSTMDTKISSALMYCKTSKEIWTKAKTRYGQGKNFAHIFSLKQELSNIKQGNLNN 130
           +MSW+L++M+ +++    Y  +SK +W   K  YGQ  N A IF LK+E++   Q   + 
Sbjct: 93  VMSWILNSMEPQVAEIFSYSDSSKHLWESLKEMYGQQNNAARIFELKKEIAGAYQEGKSF 152

Query: 131 SDLVAEILTKWEELQMYLPETINPEEIYKRNEHELIYTYLGALDSSFEPIRAQILSSAEM 190
            + + ++   W EL +Y P T + + + +R E +  +  L +LDS +E +R  IL S EM
Sbjct: 153 IEHLGKLKGMWNELALYRPHTTDSKVLVQRAEEDKNFQLLASLDSDYEDLRRNILMSTEM 212

Query: 191 PQFDDVVLKIEQEESRRRLMNPSPAPSTDNQAFRATYNKDRGKGN---LWCDHCKRSSHN 250
           P F+++   I++EE RR++M+      T     +A +  DR KG    + CD+C +  H 
Sbjct: 213 PSFNNICTIIQREEIRRKVMHSETKSHTVTSESKA-FVVDRRKGQRDPVKCDYCGQPRHT 272

Query: 251 KESCWVLHPHLKPQ 261
           +  CW+LHPHLKP+
Sbjct: 273 RNRCWILHPHLKPK 276

The following BLAST results are available for this feature:

BLAST of MELO.jh033743.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK00722.1	4.91e-260	99.73	copia-like protein [Cucumis melo var. makuwa] >TYK25285.1 copia-like protein [Cu...	[more]
KAA0036222.1	2.21e-259	99.72	copia-like protein [Cucumis melo var. makuwa]	[more]
XP_021808903.1	6.60e-52	36.15	uncharacterized protein LOC110752531 [Prunus avium]	[more]
XP_018497906.1	3.20e-50	36.12	PREDICTED: uncharacterized protein LOC108865503 [Pyrus x bretschneideri]	[more]
XP_018506028.1	8.85e-50	36.50	PREDICTED: uncharacterized protein LOC108868128 [Pyrus x bretschneideri]	[more]

BLAST of MELO.jh033743.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh033743.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DP15	2.38e-260	99.73	Copia-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G0...	[more]
A0A5A7SYC4	1.07e-259	99.72	Copia-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18G00...	[more]
A0A6P5S547	3.19e-52	36.15	uncharacterized protein LOC110752531 OS=Prunus avium OX=42229 GN=LOC110752531 PE...	[more]
A0A5N5FSZ2	2.32e-48	33.72	Retrotran_gag_3 domain-containing protein OS=Pyrus ussuriensis x Pyrus communis ...	[more]
A0A6P5TI76	8.96e-48	35.43	uncharacterized protein LOC110767548 isoform X3 OS=Prunus avium OX=42229 GN=LOC1...	[more]

BLAST of MELO.jh033743.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 7..46 e-value: 5.1E-8 score: 32.6
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 64..208 e-value: 1.1E-7 score: 31.7
None	No IPR available	PANTHER	PTHR34222:SF43	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 14..288
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 14..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh033743.1.t1	MELO.jh033743.1.t1	mRNA