MELO.jh033434.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh033434.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	DnaJ-like protein subfamily B member 4
Location	chr05: 3849832 .. 3850051 (-)
RNA-Seq Expression	MELO.jh033434.1
Synteny	MELO.jh033434.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAAGAACGAGCCGATTCAGCTGGGCAGTGGATCTGATCGATTTGCAAGAAGGGGTTGGGCGGCGGTGTCTGAAGAACGGGGAGGCGAAGGTCTGGTAGACGGTGTCTGAAGTACTGGCGTTCTGGTTGGCAGCGGATATGGACGACGATCACACAAACGAAGCAGAGACCGACGAACAGAAGGAGATTGAGGATCTGCACGAGCGGTGGTAG

mRNA sequence

ATGGAGATGAAGAACGAGCCGATTCAGCTGGGCAGTGGATCTGATCGATTTGCAAGAAGGGGTTGGGCGGCGGTGTCTGAAGAACGGGGAGGCGAAGCGGATATGGACGACGATCACACAAACGAAGCAGAGACCGACGAACAGAAGGAGATTGAGGATCTGCACGAGCGGTGGTAG

Coding sequence (CDS)

ATGGAGATGAAGAACGAGCCGATTCAGCTGGGCAGTGGATCTGATCGATTTGCAAGAAGGGGTTGGGCGGCGGTGTCTGAAGAACGGGGAGGCGAAGCGGATATGGACGACGATCACACAAACGAAGCAGAGACCGACGAACAGAAGGAGATTGAGGATCTGCACGAGCGGTGGTAG

Protein sequence

MEMKNEPIQLGSGSDRFARRGWAAVSEERGGEADMDDDHTNEAETDEQKEIEDLHERW

Homology

[Close]

BLAST of MELO.jh033434.1 vs. NCBI nr
Match: KAA0051230.1 (uncharacterized protein E6C27_scaffold1250G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 2.03e-10
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1  MEMKNEPIQLGSGSDRFARRGWAAVSEERGGE 32
          MEMK EPI+LGSGSDRFARRGWAAVSEERGGE
Sbjct: 1  MEMKKEPIELGSGSDRFARRGWAAVSEERGGE 32

[Close]

BLAST of MELO.jh033434.1 vs. NCBI nr
Match: TYJ99849.1 (dnaJ-like protein subfamily B member 4 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.85e-09
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MEMKNEPIQLGSGSDRFARRGWAAVSEERGGE 32
           MEMKN+ I+LGSGSDRFARRGWAAVSEERGGE
Sbjct: 146 MEMKNKSIELGSGSDRFARRGWAAVSEERGGE 177

[Close]

BLAST of MELO.jh033434.1 vs. NCBI nr
Match: KAA0066047.1 (dnaJ-like protein subfamily B member 4 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.85e-09
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MEMKNEPIQLGSGSDRFARRGWAAVSEERGGE 32
           MEMKN+ I+LGSGSDRFARRGWAAVSEERGGE
Sbjct: 146 MEMKNKSIELGSGSDRFARRGWAAVSEERGGE 177

[Close]

BLAST of MELO.jh033434.1 vs. NCBI nr
Match: KAA0038930.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 4.82e-09
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   MEMKNEPIQLGSGSDRFARRGWAAVSEERGGE 32
           MEMKNE I+LGSGSDRFAR GWAAVSEERGGE
Sbjct: 97  MEMKNESIELGSGSDRFARTGWAAVSEERGGE 128

[Close]

BLAST of MELO.jh033434.1 vs. ExPASy TrEMBL
Match: A0A5A7U7Q3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00380 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.85e-11
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1  MEMKNEPIQLGSGSDRFARRGWAAVSEERGGE 32
          MEMK EPI+LGSGSDRFARRGWAAVSEERGGE
Sbjct: 1  MEMKKEPIELGSGSDRFARRGWAAVSEERGGE 32

[Close]

BLAST of MELO.jh033434.1 vs. ExPASy TrEMBL
Match: A0A5A7VG36 (DnaJ-like protein subfamily B member 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00220 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.96e-10
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MEMKNEPIQLGSGSDRFARRGWAAVSEERGGE 32
           MEMKN+ I+LGSGSDRFARRGWAAVSEERGGE
Sbjct: 146 MEMKNKSIELGSGSDRFARRGWAAVSEERGGE 177

[Close]

BLAST of MELO.jh033434.1 vs. ExPASy TrEMBL
Match: A0A5D3BLJ4 (DnaJ-like protein subfamily B member 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00610 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.96e-10
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MEMKNEPIQLGSGSDRFARRGWAAVSEERGGE 32
           MEMKN+ I+LGSGSDRFARRGWAAVSEERGGE
Sbjct: 146 MEMKNKSIELGSGSDRFARRGWAAVSEERGGE 177

[Close]

BLAST of MELO.jh033434.1 vs. ExPASy TrEMBL
Match: A0A5A7T6Q5 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00010 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.33e-09
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   MEMKNEPIQLGSGSDRFARRGWAAVSEERGGE 32
           MEMKNE I+LGSGSDRFAR GWAAVSEERGGE
Sbjct: 97  MEMKNESIELGSGSDRFARTGWAAVSEERGGE 128

The following BLAST results are available for this feature:

BLAST of MELO.jh033434.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051230.1	2.03e-10	93.75	uncharacterized protein E6C27_scaffold1250G00380 [Cucumis melo var. makuwa]	[more]
TYJ99849.1	1.85e-09	90.63	dnaJ-like protein subfamily B member 4 [Cucumis melo var. makuwa]	[more]
KAA0066047.1	1.85e-09	90.63	dnaJ-like protein subfamily B member 4 [Cucumis melo var. makuwa]	[more]
KAA0038930.1	4.82e-09	90.63	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, puta...	[more]

BLAST of MELO.jh033434.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh033434.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7Q3	9.85e-11	93.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VG36	8.96e-10	90.63	DnaJ-like protein subfamily B member 4 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3BLJ4	8.96e-10	90.63	DnaJ-like protein subfamily B member 4 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7T6Q5	2.33e-09	90.63	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, puta...	[more]

BLAST of MELO.jh033434.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh033434.1.t1	MELO.jh033434.1.t1	mRNA