MELO.jh033409.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh033409.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	protein MODIFIER OF SNC1 11-like
Location	chr04: 32931401 .. 32932560 (+)
RNA-Seq Expression	MELO.jh033409.1
Synteny	MELO.jh033409.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCTCCAATGGCGACCGATTTCAAAGAAGAACTGAGCGAAAACACTCTTCCAGGACCGAAGCAAACCCTACCGCTAGATTTTGGAATCACAGCCGCTGGTAATGGCCATGTAGATCAACACCAAAATCGCCATTCTTCCGCTACAAAGGAAGGTATTGAATCTCAAAGTTCCGCCGTGGGGAGAATACCGGAGTCTCATGCTTCTGTTTTTGATATCTTTAAGAAGATCCGTCGGGCGGAGCGATTTGGGATCCCCGTACGTTTATCAGAGGCAGAAAAGCGATTTTCTCGAGCTGAGAGGTGATTTTGCGGTTTTATGGCATTGTTTCCTTTTTCGTATGAATTTGTTGTGTGTTCGTATGTCTAGGATTCGAGGAATGGGACAAGCGTAGAGTTTGTTTTAAATTTGATGCCGTTTCATGGATCGATAATGAATTTTTCAACTGATTAGTGCATTTATTCAAGAACAAGATATTCTGTATTCTCGTTTTTCAATGTGAATGCAGACGATAGTTTTGAACTTCTTCTTGTTTCATCCTCTTTTCTTTATTCTTCTTTGTCGTGCCTGAAATTTTAGAGTGGCATTTCGGTTATGAACCGGGAACTTTGCAGGTTCGGGATTGATTCAGTGTGTGGACCGGATGAAATGGCCAAAGCAGAGGAGCTGAAGAGAAAGGCAAGAGCAGAGAGGTTTTTCTATCTGATTTATGGTATCGCGTTAGAGAAAATTGTATAATTATTTCTTCCTCAGTTCGATTATCTTTTCTGTTTTTCAGATTTGAGCTCTTAACTCTGTCTATGGCTACTGATGAAGAAGCAAAGAAGAAAGCTCGGCTTGCCAGATTTGCCCCGTATTTATAGAATTCCCCTTTGGTTAAACAACAACGCAAAATCAACAATTCTTATGCACAGCCAAACTATTATTCATTTGATTGACCAATTGAACGAGCCGACCTTGTCTCAGATACCCCCTTAGTTATTCGTATCCTGGTCAGTTTAAGGATGCGGAAATTATTTGTATGAACTCTATAGAATTGAATTCCATTAGCCGGAGGTGAAGTTTTAATTTCTAGAACTGCACCCTCTTATGGGTACTTTCATTCAATTTTCTACATGCCCATTTTTGTTTTCAAAATAAAATTATCTATACTACTATAA

mRNA sequence

CCTTCTCCAATGGCGACCGATTTCAAAGAAGAACTGAGCGAAAACACTCTTCCAGGACCGAAGCAAACCCTACCGCTAGATTTTGGAATCACAGCCGCTGGTAATGGCCATGTAGATCAACACCAAAATCGCCATTCTTCCGCTACAAAGGAAGGTATTGAATCTCAAAGTTCCGCCGTGGGGAGAATACCGGAGTCTCATGCTTCTGTTTTTGATATCTTTAAGAAGATCCGTCGGGCGGAGCGATTTGGGATCCCCGTACGTTTATCAGAGGCAGAAAAGCGATTTTCTCGAGCTGAGAGGTTCGGGATTGATTCAGTGTGTGGACCGGATGAAATGGCCAAAGCAGAGGAGCTGAAGAGAAAGATTTGAGCTCTTAACTCTGTCTATGGCTACTGATGAAGAAGCAAAGAAGAAAGCTCGGCTTGCCAGATTTGCCCCGTATTTATAGAATTCCCCTTTGGTTAAACAACAACGCAAAATCAACAATTCTTATGCACAGCCAAACTATTATTCATTTGATTGACCAATTGAACGAGCCGACCTTGTCTCAGATACCCCCTTAGTTATTCGTATCCTGGTCAGTTTAAGGATGCGGAAATTATTTGTATGAACTCTATAGAATTGAATTCCATTAGCCGGAGGTGAAGTTTTAATTTCTAGAACTGCACCCTCTTATGGGTACTTTCATTCAATTTTCTACATGCCCATTTTTGTTTTCAAAATAAAATTATCTATACTACTATAA

Coding sequence (CDS)

ATGGCGACCGATTTCAAAGAAGAACTGAGCGAAAACACTCTTCCAGGACCGAAGCAAACCCTACCGCTAGATTTTGGAATCACAGCCGCTGGTAATGGCCATGTAGATCAACACCAAAATCGCCATTCTTCCGCTACAAAGGAAGGTATTGAATCTCAAAGTTCCGCCGTGGGGAGAATACCGGAGTCTCATGCTTCTGTTTTTGATATCTTTAAGAAGATCCGTCGGGCGGAGCGATTTGGGATCCCCGTACGTTTATCAGAGGCAGAAAAGCGATTTTCTCGAGCTGAGAGGTTCGGGATTGATTCAGTGTGTGGACCGGATGAAATGGCCAAAGCAGAGGAGCTGAAGAGAAAGATTTGA

Protein sequence

MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRIPESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKI

Homology

[Close]

BLAST of MELO.jh033409.1 vs. NCBI nr
Match: XP_008442610.1 (PREDICTED: uncharacterized protein LOC103486433 isoform X2 [Cucumis melo])

HSP 1 Score: 239 bits (611), Expect = 1.21e-79
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
           MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI
Sbjct: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60

Query: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKI 120
           PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKI
Sbjct: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKI 120

[Close]

BLAST of MELO.jh033409.1 vs. NCBI nr
Match: XP_008442609.1 (PREDICTED: protein MODIFIER OF SNC1 11-like isoform X1 [Cucumis melo] >KAA0044051.1 protein MODIFIER OF SNC1 11-like isoform X1 [Cucumis melo var. makuwa] >TYK25084.1 protein MODIFIER OF SNC1 11-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (607), Expect = 1.39e-78
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
           MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI
Sbjct: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60

Query: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK 119
           PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK
Sbjct: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK 119

[Close]

BLAST of MELO.jh033409.1 vs. NCBI nr
Match: XP_004137795.1 (protein MODIFIER OF SNC1 11 isoform X2 [Cucumis sativus])

HSP 1 Score: 223 bits (567), Expect = 6.24e-73
Identity = 112/120 (93.33%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
           MATDF +ELS+NTLPGPKQTLPL FGI AAGNGHVDQHQNR S  TKEGIESQSSAVGRI
Sbjct: 1   MATDFTKELSKNTLPGPKQTLPLAFGIAAAGNGHVDQHQNRRSCGTKEGIESQSSAVGRI 60

Query: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKI 120
           PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKI
Sbjct: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKI 120

[Close]

BLAST of MELO.jh033409.1 vs. NCBI nr
Match: XP_011651924.1 (protein MODIFIER OF SNC1 11 isoform X1 [Cucumis sativus] >KGN58917.1 hypothetical protein Csa_000994 [Cucumis sativus])

HSP 1 Score: 221 bits (563), Expect = 7.07e-72
Identity = 111/119 (93.28%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
           MATDF +ELS+NTLPGPKQTLPL FGI AAGNGHVDQHQNR S  TKEGIESQSSAVGRI
Sbjct: 1   MATDFTKELSKNTLPGPKQTLPLAFGIAAAGNGHVDQHQNRRSCGTKEGIESQSSAVGRI 60

Query: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK 119
           PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK
Sbjct: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK 119

[Close]

BLAST of MELO.jh033409.1 vs. NCBI nr
Match: XP_038904188.1 (protein MODIFIER OF SNC1 11-like [Benincasa hispida])

HSP 1 Score: 203 bits (516), Expect = 1.10e-64
Identity = 105/121 (86.78%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSAT--KEGIESQSSAVG 60
           MAT+F EELSENTLPGPKQTLPL+ G  AAGNG VDQHQNR SSAT  KE IESQ +AVG
Sbjct: 1   MATNFTEELSENTLPGPKQTLPLNLGFAAAGNGQVDQHQNRRSSATITKEVIESQHAAVG 60

Query: 61  RIPESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKR 119
           RIPE H SVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEM KAEELKR
Sbjct: 61  RIPEYHVSVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMVKAEELKR 120

[Close]

BLAST of MELO.jh033409.1 vs. ExPASy Swiss-Prot
Match: Q9LZ08 (Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana OX=3702 GN=MOS11 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 67  VFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDS---VCGPDEMAKAEELKRK 120
           V DI KKIRRAERFG+ V+L+E EKR SRAERFG  +   V G +   KAEELKRK
Sbjct: 78  VDDIQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVVNGSEGTKKAEELKRK 133

[Close]

BLAST of MELO.jh033409.1 vs. ExPASy TrEMBL
Match: A0A1S3B6R5 (uncharacterized protein LOC103486433 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486433 PE=4 SV=1)

HSP 1 Score: 239 bits (611), Expect = 5.87e-80
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
           MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI
Sbjct: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60

Query: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKI 120
           PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKI
Sbjct: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRKI 120

[Close]

BLAST of MELO.jh033409.1 vs. ExPASy TrEMBL
Match: A0A5D3DNB7 (Protein MODIFIER OF SNC1 11-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002070 PE=4 SV=1)

HSP 1 Score: 238 bits (607), Expect = 6.71e-79
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
           MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI
Sbjct: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60

Query: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK 119
           PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK
Sbjct: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK 119

[Close]

BLAST of MELO.jh033409.1 vs. ExPASy TrEMBL
Match: A0A1S3B640 (protein MODIFIER OF SNC1 11-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486433 PE=4 SV=1)

HSP 1 Score: 238 bits (607), Expect = 6.71e-79
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
           MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI
Sbjct: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60

Query: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK 119
           PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK
Sbjct: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK 119

[Close]

BLAST of MELO.jh033409.1 vs. ExPASy TrEMBL
Match: A0A0A0LDV0 (Tho1_MOS11_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736650 PE=4 SV=1)

HSP 1 Score: 221 bits (563), Expect = 3.42e-72
Identity = 111/119 (93.28%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHSSATKEGIESQSSAVGRI 60
           MATDF +ELS+NTLPGPKQTLPL FGI AAGNGHVDQHQNR S  TKEGIESQSSAVGRI
Sbjct: 1   MATDFTKELSKNTLPGPKQTLPLAFGIAAAGNGHVDQHQNRRSCGTKEGIESQSSAVGRI 60

Query: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK 119
           PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK
Sbjct: 61  PESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDEMAKAEELKRK 119

[Close]

BLAST of MELO.jh033409.1 vs. ExPASy TrEMBL
Match: A0A6J1F8Q7 (protein MODIFIER OF SNC1 11-like OS=Cucurbita moschata OX=3662 GN=LOC111441859 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 3.07e-59
Identity = 99/130 (76.15%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MATDFKEELSENTLPGPKQTLPLDFGITAAGNGHVDQHQNRHS-----------SATKEG 60
           MATDF EELSEN LPGPK  LPL+ G  AAGNG VDQHQNR S           +ATKEG
Sbjct: 1   MATDFTEELSENNLPGPKSALPLNLGSAAAGNGQVDQHQNRRSFAVGPSHSVTPTATKEG 60

Query: 61  IESQSSAVGRIPESHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDE 119
            ESQ + +GR  E HASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDE
Sbjct: 61  TESQRAVLGRTSEHHASVFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDSVCGPDE 120

[Close]

BLAST of MELO.jh033409.1 vs. TAIR 10
Match: AT5G02770.1 (unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 8.4e-10
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 67  VFDIFKKIRRAERFGIPVRLSEAEKRFSRAERFGIDS---VCGPDEMAKAEELKRK 120
           V DI KKIRRAERFG+ V+L+E EKR SRAERFG  +   V G +   KAEELKRK
Sbjct: 78  VDDIQKKIRRAERFGVSVKLTEEEKRNSRAERFGTVAAAVVNGSEGTKKAEELKRK 133

The following BLAST results are available for this feature:

BLAST of MELO.jh033409.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442610.1	1.21e-79	100.00	PREDICTED: uncharacterized protein LOC103486433 isoform X2 [Cucumis melo]	[more]
XP_008442609.1	1.39e-78	100.00	PREDICTED: protein MODIFIER OF SNC1 11-like isoform X1 [Cucumis melo] >KAA004405...	[more]
XP_004137795.1	6.24e-73	93.33	protein MODIFIER OF SNC1 11 isoform X2 [Cucumis sativus]	[more]
XP_011651924.1	7.07e-72	93.28	protein MODIFIER OF SNC1 11 isoform X1 [Cucumis sativus] >KGN58917.1 hypothetica...	[more]
XP_038904188.1	1.10e-64	86.78	protein MODIFIER OF SNC1 11-like [Benincasa hispida]	[more]

BLAST of MELO.jh033409.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ08	1.2e-08	64.29	Protein MODIFIER OF SNC1 11 OS=Arabidopsis thaliana OX=3702 GN=MOS11 PE=1 SV=1	[more]

BLAST of MELO.jh033409.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B6R5	5.87e-80	100.00	uncharacterized protein LOC103486433 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3DNB7	6.71e-79	100.00	Protein MODIFIER OF SNC1 11-like isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3B640	6.71e-79	100.00	protein MODIFIER OF SNC1 11-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486...	[more]
A0A0A0LDV0	3.42e-72	93.28	Tho1_MOS11_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G73665...	[more]
A0A6J1F8Q7	3.07e-59	76.15	protein MODIFIER OF SNC1 11-like OS=Cucurbita moschata OX=3662 GN=LOC111441859 P...	[more]

BLAST of MELO.jh033409.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02770.1	8.4e-10	64.29	unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040746	THO1_MOS11, C-terminal domain	PFAM	PF18592	Tho1_MOS11_C	coord: 69..100 e-value: 1.8E-11 score: 43.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
IPR044209	Protein MODIFIER OF SNC1 11	PANTHER	PTHR47701	PROTEIN MODIFIER OF SNC1 11	coord: 33..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh033409.1.t1	MELO.jh033409.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016973	poly(A)+ mRNA export from nucleus