MELO.jh033245.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh033245.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTransmembrane protein
Locationchr03: 25780776 .. 25781487 (-)
RNA-Seq ExpressionMELO.jh033245.1
SyntenyMELO.jh033245.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATCATTTACACTGGTAGCCAGCGGGAAGAGTTTTTTGGCAAGAGCTGATGAGCAAACTGAGTGAAACAGGGATATCCAAGTTAATTCCAAGAACATTGGCTTTAATGGCGGTACAAAGACAAGCAGCAGCTTCAACATCTGTCAGCCCACTAAGAAGAGCACAGCACTCGTTCGAAACAGGGCTCCCAATTACGACACTCCCAATTCCAAGAATATCGGCACAAACGCCCAACTTCAAGGTGTCTTTTGGACAGTAACTCGATTGTACTGCCGGAGAAGATGCCGCCGGTGGCCGGATTATTTTGGGGATGGCGGGTTTTTTCTTGGGCACTGACGGTGCTGGCTTGGTTTTGGGTTGGTCGCATGGGGTGGCCAGAGCTGAGCAAAGGAGAAGAGAGAGCAACAGAATGGTTGGTAAAGAAAGAGATTTGGAAGCCATTTTAAGAAGGAAGTGATATGAAATTTGAGTTTATAGAGATGGAGTAATGGGGAAGGATAACGAGGGGGTTTATTTAAACAAGTTCGAAGATTGAGGGTTGTAGAAGACGATGAAAATGCATTTAATGGAATCTTTTGGATGCTTGTGGGGGAAACTGTAAGGAGGATTTTTTTTTTGGTCCATCAAATAATTCTTTTGAGGAATTATAACATGAAGCGAACAAATAAAAAATTAAAAAATCAGGGCAATTAAAAAATCGAGACTAAGTTCA

mRNA sequence

TGATCATTTACACTGGTAGCCAGCGGGAAGAGTTTTTTGGCAAGAGCTGATGAGCAAACTGAGTGAAACAGGGATATCCAAGTTAATTCCAAGAACATTGGCTTTAATGGCGGTACAAAGACAAGCAGCAGCTTCAACATCTGTCAGCCCACTAAGAAGAGCACAGCACTCGTTCGAAACAGGGCTCCCAATTACGACACTCCCAATTCCAAGAATATCGGCACAAACGCCCAACTTCAAGGTGTCTTTTGGACAGTAACTCGATTGTACTGCCGGAGAAGATGCCGCCGGTGGCCGGATTATTTTGGGGATGGCGGGTTTTTTCTTGGGCACTGACGGTGCTGGCTTGGTTTTGGGTTGGTCGCATGGGGTGGCCAGAGCTGAGCAAAGGAGAAGAGAGAGCAACAGAATGGTTGGTAAAGAAAGAGATTTGGAAGCCATTTTAAGAAGGAAGTGATATGAAATTTGAGTTTATAGAGATGGAGTAATGGGGAAGGATAACGAGGGGGTTTATTTAAACAAGTTCGAAGATTGAGGGTTGTAGAAGACGATGAAAATGCATTTAATGGAATCTTTTGGATGCTTGTGGGGGAAACTGTAAGGAGGATTTTTTTTTTGGTCCATCAAATAATTCTTTTGAGGAATTATAACATGAAGCGAACAAATAAAAAATTAAAAAATCAGGGCAATTAAAAAATCGAGACTAAGTTCA

Coding sequence (CDS)

ATGAGCAAACTGAGTGAAACAGGGATATCCAAGTTAATTCCAAGAACATTGGCTTTAATGGCGGTACAAAGACAAGCAGCAGCTTCAACATCTGTCAGCCCACTAAGAAGAGCACAGCACTCGTTCGAAACAGGGCTCCCAATTACGACACTCCCAATTCCAAGAATATCGGCACAAACGCCCAACTTCAAGGTGTCTTTTGGACAGTAA

Protein sequence

MSKLSETGISKLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLPIPRISAQTPNFKVSFGQ
Homology
BLAST of MELO.jh033245.1 vs. NCBI nr
Match: KAF5773420.1 (hypothetical protein HanXRQr2_Chr13g0588401 [Helianthus annuus])

HSP 1 Score: 86.3 bits (212), Expect = 1.66e-19
Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 2  SKLSETGISKLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLPIPRISAQTP 61
          +KLSETG  +LIPRTLALMAVQRQAA S S  P   AQH  ++G+P TTL  PR SAQTP
Sbjct: 21 NKLSETGTLRLIPRTLALMAVQRQAATSKSTKPSSNAQHLLDSGVPTTTLTKPRTSAQTP 80

Query: 62 NFKVSFGQ 69
          +F VS GQ
Sbjct: 81 SFSVSLGQ 88

BLAST of MELO.jh033245.1 vs. NCBI nr
Match: XP_024985453.1 (uncharacterized protein LOC112521056 [Cynara cardunculus var. scolymus] >KVH90264.1 hypothetical protein Ccrd_007725 [Cynara cardunculus var. scolymus])

HSP 1 Score: 80.9 bits (198), Expect = 1.04e-17
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 2  SKLSETGISKLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLPIPRISAQTP 61
          +KL+  G+ +LIP+TLALMAVQRQAA S S  P   AQH  + G+P TTL  PR SAQTP
Sbjct: 9  NKLNVIGMLRLIPKTLALMAVQRQAATSKSTKPSSSAQHLLDAGVPTTTLTRPRTSAQTP 68

Query: 62 NFKVSFGQ 69
          NF VS GQ
Sbjct: 69 NFSVSLGQ 76

BLAST of MELO.jh033245.1 vs. NCBI nr
Match: KHN07064.1 (hypothetical protein glysoja_023247 [Glycine soja])

HSP 1 Score: 71.2 bits (173), Expect = 2.66e-13
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 11 KLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLPIPRISAQTPNFKVSFG 68
          K IP TLAL+AV RQ+AAS S  PL  AQHS E G+P  TL  P++SAQTP+F VS G
Sbjct: 6  KFIPSTLALIAVHRQSAASKSAKPLTNAQHSLEGGVPTVTLTSPKMSAQTPSFNVSLG 63

BLAST of MELO.jh033245.1 vs. NCBI nr
Match: KAA3475848.1 (transmembrane protein [Gossypium australe])

HSP 1 Score: 69.7 bits (169), Expect = 3.70e-13
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 2  SKLSETGISKLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLPIPRISAQTP 61
          SKL ETG+ +L+P+TLAL+AVQRQ AAS S  P RR QH    G P+T L  P   A TP
Sbjct: 21 SKLRETGMLRLMPKTLALIAVQRQTAASRSTRPSRREQHGITGGEPMTGLTKPSTLAHTP 80

Query: 62 NFKVSFG 68
          N + S G
Sbjct: 81 NLRASLG 87

BLAST of MELO.jh033245.1 vs. NCBI nr
Match: MBA0768798.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 69.7 bits (169), Expect = 1.09e-12
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 2   SKLSETGISKLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLPIPRISAQTP 61
           SKL ETG+ +L+P+ LAL+AVQRQAAAS S  PLRR QH    G P+ TL +    A TP
Sbjct: 49  SKLRETGMLRLMPKMLALIAVQRQAAASRSTRPLRREQHGITGGEPMVTLTMLSTLAHTP 108

Query: 62  NFKVSFG 68
           N + S G
Sbjct: 109 NLRASLG 115

BLAST of MELO.jh033245.1 vs. ExPASy TrEMBL
Match: A0A118JT75 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_007725 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.02e-18
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0

Query: 2  SKLSETGISKLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLPIPRISAQTP 61
          +KL+  G+ +LIP+TLALMAVQRQAA S S  P   AQH  + G+P TTL  PR SAQTP
Sbjct: 9  NKLNVIGMLRLIPKTLALMAVQRQAATSKSTKPSSSAQHLLDAGVPTTTLTRPRTSAQTP 68

Query: 62 NFKVSFGQ 69
          NF VS GQ
Sbjct: 69 NFSVSLGQ 76

BLAST of MELO.jh033245.1 vs. ExPASy TrEMBL
Match: A0A5B6W3Q8 (Transmembrane protein OS=Gossypium australe OX=47621 GN=EPI10_025979 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.79e-13
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 2  SKLSETGISKLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLPIPRISAQTP 61
          SKL ETG+ +L+P+TLAL+AVQRQ AAS S  P RR QH    G P+T L  P   A TP
Sbjct: 21 SKLRETGMLRLMPKTLALIAVQRQTAASRSTRPSRREQHGITGGEPMTGLTKPSTLAHTP 80

Query: 62 NFKVSFG 68
          N + S G
Sbjct: 81 NLRASLG 87

BLAST of MELO.jh033245.1 vs. ExPASy TrEMBL
Match: A0A251RR95 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0549911 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.73e-13
Identity = 39/69 (56.52%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 2  SKLSETGISKLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLP-IPRISAQT 61
          SKLS+TG  +LIPR LAL+AVQRQ AAS S  P RR QH    G P T L  +P   A T
Sbjct: 14 SKLSDTGTFRLIPRMLALIAVQRQMAASRSTRPSRRLQHGLTGGSPTTRLSKLPSTLAHT 73

Query: 62 PNFKVSFGQ 69
          PN + S GQ
Sbjct: 74 PNLRASLGQ 82

BLAST of MELO.jh033245.1 vs. ExPASy TrEMBL
Match: A0A7J9E7L5 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_017578 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.28e-13
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 2   SKLSETGISKLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLPIPRISAQTP 61
           SKL ETG+ +L+P+ LAL+AVQRQAAAS S  PLRR QH    G P+ TL +    A TP
Sbjct: 49  SKLRETGMLRLMPKMLALIAVQRQAAASRSTRPLRREQHGITGGEPMVTLTMLSTLAHTP 108

Query: 62  NFKVSFG 68
           N + S G
Sbjct: 109 NLRASLG 115

BLAST of MELO.jh033245.1 vs. ExPASy TrEMBL
Match: A0A022QSM1 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017316mg PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.14e-13
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 2  SKLSETGISKLIPRTLALMAVQRQAAASTSVSPLRRAQHSFETGLPITTLPI--PRISAQ 61
          SKLSE G  + IPRT ALMAVQRQ AAS S +P  R QH    G+PI   PI  P     
Sbjct: 14 SKLSERGTFRFIPRTFALMAVQRQTAASRSANPAMRLQHGVFGGVPIVR-PINPPSKLVH 73

Query: 62 TPNFKVSFGQ 69
          TP+F+VSFGQ
Sbjct: 74 TPSFRVSFGQ 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF5773420.11.66e-1966.18hypothetical protein HanXRQr2_Chr13g0588401 [Helianthus annuus][more]
XP_024985453.11.04e-1761.76uncharacterized protein LOC112521056 [Cynara cardunculus var. scolymus] >KVH9026... [more]
KHN07064.12.66e-1362.07hypothetical protein glysoja_023247 [Glycine soja][more]
KAA3475848.13.70e-1355.22transmembrane protein [Gossypium australe][more]
MBA0768798.11.09e-1255.22hypothetical protein [Gossypium trilobum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A118JT755.02e-1861.76Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_007... [more]
A0A5B6W3Q81.79e-1355.22Transmembrane protein OS=Gossypium australe OX=47621 GN=EPI10_025979 PE=4 SV=1[more]
A0A251RR953.73e-1356.52Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr17g0549911 PE... [more]
A0A7J9E7L55.28e-1355.22Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_017578 PE=4 SV=1[more]
A0A022QSM19.14e-1357.14Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017316mg PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh033245.1.t1MELO.jh033245.1.t1mRNA