MELO.jh033054.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh033054.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr01: 15611922 .. 15613129 (+)
RNA-Seq ExpressionMELO.jh033054.1
SyntenyMELO.jh033054.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTCCAACCCTGCTTCATAATCTGCCACCAAATCCTCCGCAATCAACCCCACTTTCACCCACTCATTATCCTCTCCATCTTTCCATTTCACCAAATACTCCAAATTCTCCCCTTTCCCTCTCTTCTCCAACAATTCCTCCACCTCCGCATACTCGTAAACCACTTTCTCCACTGCTCCGATCACCTTCTCCAACCCCAATCTTCTCATAAACTGAACCCTCGGCGTCGCTTTCAATATCTCCTTAGCTAACTCCAACGCCGTCCTTCCCTTCTCATCTTCAATCTCCGGATCCGCCCCCAATTCCACCAACAACTCCACCGTCTCTGGTTTCACATACCCAGCCGCCATATGCAAAGCTGTAAACCCACCGCTGTTATCACGGTGGTTAAGATTCACACCGGCTTCCGCCAATATTCTCACACATTCCACAGACCCAAGTCCAGAAACAAACAGAAGAGCGGTTCTCCCATCTTCATCCACCGCATCGAAGTCGCGTTCATCACCAGAATCTATAAGCGATTCGAGAGCGGATTTATCGGCTTTCTTTGCGGCGGTCCACCAGGGAGTTTCGTACTCGGCTACAACATCTTTAGCGATGAAATCGGAAGGAACCCATGAAGGGGAATGCCCATCTTTCCATTTAATTAGATACTCCATTCCAGTAGCGTCTGGCAGAGCACGGCTGCCGATGATGCCATCGACTTCGCCGTAGGATTCGTCGTCTTCTGGTTTGTAGGTTTGTTGCGCGATGGGTTGGTCGCTTTGAACGGCGTAAGCGGTGAAATGGGTAAAGTTGCGGCGGAGATTGAGATGGGGGATTGTAGAGGGGAAAGGGATAGGGAGAGGGAGAGGGGGTTTAGGGGGAAGTTTAAGGCGAGAGAGAGATTGATTGAGAAAGACGGCTTCCATGGAGGAAGGTGCGGCTGTGGTTGTGAAGGAGGAGGAGGAGGGGGAGGAGAAGGGAAGTGGAAGAAGGGGTTGGAGAGAGAGAAACGGTGTCGATTTGGGAAGGTGGGGTATGGAAAATCTGAGATAAGAGGAAATTATGGATAAGGAAATGGATGGAATCCATGGCTGTCATTTTTGTTAGAGAAATTTTCTGTATTTTGTTTGTTTTTTTTTTTTTTAATGGTTTATTTCACAGCTCTGAACTTTGAATTGGATTTAGTTTAGACACTTCTTTTAACCAAAAAATCAACAAACAAA

mRNA sequence

TATTCCAACCCTGCTTCATAATCTGCCACCAAATCCTCCGCAATCAACCCCACTTTCACCCACTCATTATCCTCTCCATCTTTCCATTTCACCAAATACTCCAAATTCTCCCCTTTCCCTCTCTTCTCCAACAATTCCTCCACCTCCGCATACTCGTAAACCACTTTCTCCACTGCTCCGATCACCTTCTCCAACCCCAATCTTCTCATAAACTGAACCCTCGGCGTCGCTTTCAATATCTCCTTAGCTAACTCCAACGCCGTCCTTCCCTTCTCATCTTCAATCTCCGGATCCGCCCCCAATTCCACCAACAACTCCACCGTCTCTGGTTTCACATACCCAGCCGCCATATGCAAAGCTGTAAACCCACCGCTGTTATCACGGTGGTTAAGATTCACACCGGCTTCCGCCAATATTCTCACACATTCCACAGACCCAAGTCCAGAAACAAACAGAAGAGCGGTTCTCCCATCTTCATCCACCGCATCGAAGTCGCGTTCATCACCAGAATCTATAAGCGATTCGAGAGCGGATTTATCGGCTTTCTTTGCGGCGGTCCACCAGGGAGTTTCGTACTCGGCTACAACATCTTTAGCGATGAAATCGGAAGGAACCCATGAAGGGGAATGCCCATCTTTCCATTTAATTAGATACTCCATTCCAGTAGCGTCTGGCAGAGCACGGCTGCCGATGATGCCATCGACTTCGCCGTAGGATTCGTCGTCTTCTGGTTTGTAGGTTTGTTGCGCGATGGGTTGGTCGCTTTGAACGGCGTAAGCGGTGAAATGGGTAAAGTTGCGGCGGAGATTGAGATGGGGGATTGTAGAGGGGAAAGGGATAGGGAGAGGGAGAGGGGGTTTAGGGGGAAGTTTAAGGCGAGAGAGAGATTGATTGAGAAAGACGGCTTCCATGGAGGAAGGTGCGGCTGTGGTTGTGAAGGAGGAGGAGGAGGGGGAGGAGAAGGGAAGTGGAAGAAGGGGTTGGAGAGAGAGAAACGGTGTCGATTTGGGAAGGTGGGGTATGGAAAATCTGAGATAAGAGGAAATTATGGATAAGGAAATGGATGGAATCCATGGCTGTCATTTTTGTTAGAGAAATTTTCTGTATTTTGTTTGTTTTTTTTTTTTTTAATGGTTTATTTCACAGCTCTGAACTTTGAATTGGATTTAGTTTAGACACTTCTTTTAACCAAAAAATCAACAAACAAA

Coding sequence (CDS)

ATGCAAAGCTGTAAACCCACCGCTGTTATCACGGTGGTTAAGATTCACACCGGCTTCCGCCAATATTCTCACACATTCCACAGACCCAAGTCCAGAAACAAACAGAAGAGCGGTTCTCCCATCTTCATCCACCGCATCGAAGTCGCGTTCATCACCAGAATCTATAAGCGATTCGAGAGCGGATTTATCGGCTTTCTTTGCGGCGGTCCACCAGGGAGTTTCGTACTCGGCTACAACATCTTTAGCGATGAAATCGGAAGGAACCCATGA

Protein sequence

MQSCKPTAVITVVKIHTGFRQYSHTFHRPKSRNKQKSGSPIFIHRIEVAFITRIYKRFESGFIGFLCGGPPGSFVLGYNIFSDEIGRNP
Homology
[Close]
BLAST of MELO.jh033054.1 vs. NCBI nr
Match: KAG2396989.1 (uncharacterized protein HKW66_Vig0246450 [Vigna angularis])

HSP 1 Score: 49.3 bits (116), Expect = 1.58e-04
Identity = 23/75 (30.67%), Postives = 39/75 (52.00%), Query Frame = 0 

Query: 15  IHTGFRQYSHTFHRPKSRNKQKSGSPIFIHRIEVAFITRIYKRFESGFIGFLCGGPPGSF 74
           +   FRQ  H+  R KS  +++ G+   +H + +  + R  +  + G IG L G PP  F
Sbjct: 34  VRARFRQQLHSRFRAKSGYEEERGTTFGVHSVYITIVARFDEVPQRGLIGLLRGSPPRGF 93

Query: 75  VLGYNIFSDEIGRNP 89
           +L  ++F  E+  NP
Sbjct: 94  ILDDDVFGYEVCGNP 108

The following BLAST results are available for this feature:
BLAST of MELO.jh033054.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG2396989.11.58e-0430.67uncharacterized protein HKW66_Vig0246450 [Vigna angularis][more]
BLAST of MELO.jh033054.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh033054.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh033054.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh033054.1.t1MELO.jh033054.1.t1mRNA