MELO.jh032367.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh032367.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr12: 1843481 .. 1845758 (-)
RNA-Seq ExpressionMELO.jh032367.1
SyntenyMELO.jh032367.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGGAAATTAAGATTTTGATTCTAAGAGTTTGAAAAACAAAATGAGTTCTGGTTGCAAGTGTGGTGACAACTGCTCATGTGGAGATAGTTGCAATTGCCTCTCGAGGTATCTTTCTTTGCTTTTGTTATCTACTTTTTACTAAAGTTTTTAAATTTTTTCATATCATAATTGTTTCATCAATCGTCTTCTATTTTTTAAATTTTTATTTGTCTCTTCTCATTTTTTTTTTCATTTATAGTGTCTAGTTTTTTTAGAATTAACATATTTGAATGTGTAGCCAAATTCTAAGAACAAACATAGGTTTTTTTTTCTAGTTTATTTAAGGTTAGTTATAAATATAACTAATATATATGGAAAACATTAGTAGGAAGGTAATAACAAAACATAGAAATTTACGGACTATAGTAGTTATAAATGGTTATGGATTTAGGTTTAAATAAAGGGAAATTTTCATAAATATAACAAACTACTAAAATATTTACCGTCCGTCTAACAAAATCCATAAAACTAGTCATTTTTTAAATATTTCAAGTTTGCTCTTTCATCTTTCTTCTCCTTTTCGCTGCGATTTCTTTCTATTGTCTTTCTTCCTTTCCTCTTCTATTTTTTTTCGCTGCGATTTCTTTCTATCGTCTTTCTTCTTTTCATCCTCTTTTTTTTACATCGTTTAGATTTGAATAACCAAATCTGATTTCTTTCTATCATTTTTCTTCTTTTTCTGTTTTTTCGTTGTCATTTCTTTCCATCGACTTTCTTCTTTACTTTTTTACGTCATTTAGATTAGGATAACCAAATCTAAAAGGTTGTGTATAAAGAATCCTGAAAAAATAGTCAAACCTAAACGATCGTGTAAAAAAAATAAATAACCGTATACTAAAAGAATCGTTAGCTAAATCTTAACGTACCAAAGAATCTTGAAAAAATAAACGTGTAAGCAAATCTAAACAATTCTGTTCCAAAAGAATCTTCAAAAAATTCGTTTAGCCAAATCTAAACGATCATCTACCAAAATTTTGAAAAAAAAATAGTTTAAATTTGGGTAGCCAAATCTAAATGTCGTGTAGTTAAATCTAAACGATTGTGTAGCAAATATATTACACGCGTGCACGTTGTTGATGAAGTAGTTTTGGTATTTTTCATGACAAGTCACTGAACTTTTTCTGTTTTCTGAATTGTTCTATACAGTGTAAATATTTTGTCACTTTGTTATATTTTTTAAAAGATCCCATCAATAAAAATGCTTTTAAAAACTTATATTTGTGTTAGTTTTAATAAAGGAGAAGAAAATCATCATAAAATTATACTTTTGAAATTTTCAAAACTAAATAGTTGTCAAAAACCTTTCAAAGATTCATTTTTATTTTTGAAATTTGTTTATCGATGAATTCTAAATTTTAGTTAAGAAACAATGAATAGTATTGTGAATAGCACCATTTTCAATATGAAAATCCAATCATATTGTTTTAAATAAGAAAATTACTGAAAACATTCTCGAATATAATCAAATTTTATTGTCTACCAAAGATCACTATAATAGATAGTGATGAACACCGATAAACATTCATAAATGTATCTCTCATCTAATATATATATATAATAAAATTTTGCTATATATATAAGAGTTGGTTGATTAAACTATATTTGAAGATATTTTTAAATAGTTAGACTTACCAGAAAACATGAAAAATCTTCAACAAATTGCTATATTTATAAAACAAGGGATAATTTCTTTGTTCATTCTTTTTATGCAGTAGGTGAATATTGAACGTTATTTATTTATGAATTTTATTAATTATTTTTCTAAAAAACCTTCGTAGGACCATCAAGAAGGCCACCTCCCTAATCAACATGTACGTAAATTAAATGATTTCAACAAGTTACTTTTAATTTCTTTTGTTAATTCCTTTAAACAAATCGACATACTAGAAATTTTTTTATTGAAAATCGTGCACAGGAATAACGGTTGCAGCTGCTGTGATAGTAGCTGCTCATGCGACGCCTGCGATTGCTGCTAATGAGCTCTTGGAGAGATGAATGAATCCCTTAAACAACAAAGCTCTGTGAAATGGAATAAAATTATGTAACAATATGCAAAAAAGAAAATTGTGCTTTTGGCTTCTTGTGTTTTTGCACTTTGTTTGAAATTAGTGTGTGAAAGAACTATGTAACTGCTTTGTTGTGGGCTATGAGTGGGTTGTTGTTTTATATAATCAAAGTTGCTACAAATATTTGTTTGGAGTATTGTGTGTAATGGAAATTTGGTTTAATTTGTGTAA

mRNA sequence

TTTGGAAATTAAGATTTTGATTCTAAGAGTTTGAAAAACAAAATGAGTTCTGGTTGCAAGTGTGGTGACAACTGCTCATGTGGAGATAGTTGCAATTGCCTCTCGAGGAATAACGGTTGCAGCTGCTGTGATAGTAGCTGCTCATGCGACGCCTGCGATTGCTGCTAATGAGCTCTTGGAGAGATGAATGAATCCCTTAAACAACAAAGCTCTGTGAAATGGAATAAAATTATGTAACAATATGCAAAAAAGAAAATTGTGCTTTTGGCTTCTTGTGTTTTTGCACTTTGTTTGAAATTAGTGTGTGAAAGAACTATGTAACTGCTTTGTTGTGGGCTATGAGTGGGTTGTTGTTTTATATAATCAAAGTTGCTACAAATATTTGTTTGGAGTATTGTGTGTAATGGAAATTTGGTTTAATTTGTGTAA

Coding sequence (CDS)

ATGAGTTCTGGTTGCAAGTGTGGTGACAACTGCTCATGTGGAGATAGTTGCAATTGCCTCTCGAGGAATAACGGTTGCAGCTGCTGTGATAGTAGCTGCTCATGCGACGCCTGCGATTGCTGCTAA

Protein sequence

MSSGCKCGDNCSCGDSCNCLSRNNGCSCCDSSCSCDACDCC
Homology
[Close]
BLAST of MELO.jh032367.1 vs. NCBI nr
Match: XP_022997994.1 (metallothionein-like protein LSC54 [Cucurbita maxima])

HSP 1 Score: 50.1 bits (118), Expect = 1.86e-06
Identity = 30/49 (61.22%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 1  MSSGCKCGDNCSCGDSCNCLS---------RNNGCSCCDSSCSCDACDC 40
          M SGCKCGD+CSCGDSCNC S           +GCSC  SSCSCD C+C
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEAFILNKDGCSC-GSSCSCDPCNC 77

[Close]
BLAST of MELO.jh032367.1 vs. NCBI nr
Match: KAG7019194.1 (hypothetical protein SDJN02_18152 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 45.1 bits (105), Expect = 1.34e-04
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 0 

Query: 1  MSSGCKCGDNCSCGDSCNCLS 21
          M+SGCKCGDNCSCGDSCNCLS
Sbjct: 1  MASGCKCGDNCSCGDSCNCLS 21

[Close]
BLAST of MELO.jh032367.1 vs. ExPASy TrEMBL
Match: A0A6J1KD42 (metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 8.99e-07
Identity = 30/49 (61.22%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 1  MSSGCKCGDNCSCGDSCNCLS---------RNNGCSCCDSSCSCDACDC 40
          M SGCKCGD+CSCGDSCNC S           +GCSC  SSCSCD C+C
Sbjct: 30 MGSGCKCGDSCSCGDSCNCQSGSITEAFILNKDGCSC-GSSCSCDPCNC 77

The following BLAST results are available for this feature:
BLAST of MELO.jh032367.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022997994.11.86e-0661.22metallothionein-like protein LSC54 [Cucurbita maxima][more]
KAG7019194.11.34e-0495.24hypothetical protein SDJN02_18152 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of MELO.jh032367.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh032367.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KD428.99e-0761.22metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 P... [more]
BLAST of MELO.jh032367.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh032367.1.t1MELO.jh032367.1.t1mRNA