MELO.jh032314.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh032314.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11: 28770166 .. 28771768 (-)
RNA-Seq ExpressionMELO.jh032314.1
SyntenyMELO.jh032314.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATCCAGAGATCCATCATCCATCTCAAAATTTTTTGGCTCTGGATTGAAAATATCTCTTGTGAAACTCGGGGATGACAATTTTCTACTATGGAAATTTTAGATCCTTACTGCGCTTGAAGCTTATGATCTTGAATCATATTTGGAATCGACCGCTGAATCACCCACAAAATACATCAACCCACCTTCAAACCACACGTTGACTGCAACTGGAAGCTCATCTGCCCCTACGGTAAGCATTTTGAACCCTGAATATAAAATCTGGAAAAGGCAAGACAGATTGATATCGTCATGGCCTTCTTGGTTCAATGGATGAAGATATCTTGAATCAAATGCTTAATTGTACATCTGGAAAACTCTACAAGGTATCTACTCTTCTCGATACTTAGCTCAAACAATGTAGTTTAAAAATAAACTTCATAATATAAAAAAGGGAGTCATGTCTTTAAAGGAATATTATCTTAAAATTCAACAATGTGTTGATGCTTTAGCCTCAATAATAAACCTATATCAACTGATGATCACATACCGTACATTTTAGCTGGATTGGAAACTGAATACCAGTCTATGATATCGGTTATTTCTGCTCGTACTTATTCTCCTTCTGTTCAAAATATTATGTCACTTTTATTGACTCAAGAATCACATATTGAAAGCAAGATTACATGTGATGTCTCCCTACCTACTGTAAATGTAACTACACAAAACAGAGACATTCAATCATTGGAAAAAAAAGGTGAGGTTACACACAAAGGAAGTCCGAACAATGTCCAGTATACAAGCAATAATTCTCAATATCATTAGAGAAACCGTGTTGGAAGGTAGATCTAATAGAGGAGGAAGAGAAAATAGAAACAAGACTTTGTGTCAAATCTGCACAAAATTTGGACATATTGCTGATAGATGTTACTTTCGATATACTCCAAAGAATCATAATTCAGGTTATTCTGCTAACTCATCTAATTTTTCATATACTAATGCTTTTTATAATCCACAGATGAGTGCGATGGTTGCTTCTTATGATCTGAACATTGATAGTAATTGGTATCCTAACTCGGGAGCAACAAATCATTTGACTCAGAACTTAAGTAATTTATCAACTGGATCTGAATATGGTGGAGGGCATCCGATTTATGCAGCAAATGGTTCAGGTTTGCCAATACTCCATTATGGTTCATTACAATTTAACTCTTCATTTGTTCCATCAAAGGCTTTAGTTCTTAAAAATATTCTTCATGTTCCTTCCATTACAAAGAATCTGATAAGTGTCCCCCCAATTTGTAAAAGATAACAAAGTCAATTTTGAATTTCATCCCACTGTTTGCTATGTGAAGGATCAGGAAATTGGCCAAATACTTCTCCAAGGACATCTCTGTGATGGTTTATATCAGTTCAATCTCAAATCCTCTCATCAAAGTTTCCTGAAGTCTGCTACTGATACTAATCCTAGTGCTTTAACTACTACTTTATCTAAGTGTCATGTGAATACTACTGATGTATGACATAAGCGATTAGGCCATCCACACCCGAATGTTATACGAAATTCTTTGAAACATGTCCATCATGCCAATATTAATATAAATAAAATGAATTTCTGTTAAGCA

mRNA sequence

GTATCCAGAGATCCATCATCCATCTCAAAATTTTTTGGCTCTGGATTGAAAATATCTCTTGTGAAACTCGGGGATGACAATTTTCTACTATGGAAATTTTAGATCCTTACTGCGCTTGAAGCTTATGATCTTGAATCATATTTGGAATCGACCGCTGAATCACCCACAAAATACATCAACCCACCTTCAAACCACACGTTGACTGCAACTGGAAGCTCATCTGCCCCTACGATGAGTGCGATGGTTGCTTCTTATGATCTGAACATTGATAGTAATTGGTATCCTAACTCGGGAGCAACAAATCATTTGACTCAGAACTTAAGTAATTTATCAACTGGATCTGAATATGGTGGAGGGCATCCGATTTATGCAGCAAATGGTTCAGGATCAGGAAATTGGCCAAATACTTCTCCAAGGACATCTCTGTGATGGTTTATATCAGTTCAATCTCAAATCCTCTCATCAAAGTTTCCTGAAGTCTGCTACTGATACTAATCCTAGTGCTTTAACTACTACTTTATCTAAGTGTCATGTGAATACTACTGATGTATGACATAAGCGATTAGGCCATCCACACCCGAATGTTATACGAAATTCTTTGAAACATGTCCATCATGCCAATATTAATATAAATAAAATGAATTTCTGTTAAGCA

Coding sequence (CDS)

ATGGTGGAGGGCATCCGATTTATGCAGCAAATGGTTCAGGATCAGGAAATTGGCCAAATACTTCTCCAAGGACATCTCTGTGATGGTTTATATCAGTTCAATCTCAAATCCTCTCATCAAAGTTTCCTGAAGTCTGCTACTGATACTAATCCTAGTGCTTTAACTACTACTTTATCTAAGTGTCATGTGAATACTACTGATGTATGA

Protein sequence

MVEGIRFMQQMVQDQEIGQILLQGHLCDGLYQFNLKSSHQSFLKSATDTNPSALTTTLSKCHVNTTDV
Homology
[Close]
BLAST of MELO.jh032314.1 vs. NCBI nr
Match: KAA0059137.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK21610.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 6.75e-18
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 14  DQEIGQILLQGHLCDGLYQFNLKSSHQSFLKSATDTNPSALTTTLSKCHVNTTDV 68
           DQE GQILLQ HLCDGLYQFNLKSSHQ  +KS  + NP ALTTTLSK HVNTTDV
Sbjct: 292 DQETGQILLQRHLCDGLYQFNLKSSHQGSMKSTPNINPCALTTTLSKYHVNTTDV 346

[Close]
BLAST of MELO.jh032314.1 vs. NCBI nr
Match: TYJ95829.1 (putative copia-like retrotransposon Hopscotch polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 5.84e-14
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 12  VQDQEIGQILLQGHLCDGLYQFNLKSSHQSFLKSATDTNPSA 53
           V+DQE GQILLQGHL DGLYQFNLKSSHQS LKS TDTNPSA
Sbjct: 242 VKDQETGQILLQGHLYDGLYQFNLKSSHQSSLKSVTDTNPSA 283

[Close]
BLAST of MELO.jh032314.1 vs. ExPASy TrEMBL
Match: A0A5D3DDT9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00070 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.27e-18
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 14  DQEIGQILLQGHLCDGLYQFNLKSSHQSFLKSATDTNPSALTTTLSKCHVNTTDV 68
           DQE GQILLQ HLCDGLYQFNLKSSHQ  +KS  + NP ALTTTLSK HVNTTDV
Sbjct: 292 DQETGQILLQRHLCDGLYQFNLKSSHQGSMKSTPNINPCALTTTLSKYHVNTTDV 346

[Close]
BLAST of MELO.jh032314.1 vs. ExPASy TrEMBL
Match: A0A5D3B9Z0 (Putative copia-like retrotransposon Hopscotch polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001150 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.83e-14
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 12  VQDQEIGQILLQGHLCDGLYQFNLKSSHQSFLKSATDTNPSA 53
           V+DQE GQILLQGHL DGLYQFNLKSSHQS LKS TDTNPSA
Sbjct: 242 VKDQETGQILLQGHLYDGLYQFNLKSSHQSSLKSVTDTNPSA 283

The following BLAST results are available for this feature:
BLAST of MELO.jh032314.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059137.16.75e-1880.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYJ95829.15.84e-1488.10putative copia-like retrotransposon Hopscotch polyprotein [Cucumis melo var. mak... [more]
BLAST of MELO.jh032314.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh032314.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DDT93.27e-1880.00Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3B9Z02.83e-1488.10Putative copia-like retrotransposon Hopscotch polyprotein OS=Cucumis melo var. m... [more]
BLAST of MELO.jh032314.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh032314.1.t1MELO.jh032314.1.t1mRNA