MELO.jh031826.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh031826.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr09: 12701616 .. 12701800 (+)
RNA-Seq Expression	MELO.jh031826.1
Synteny	MELO.jh031826.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGCCATCTTTTGGACTGTTTTGGGTCGCACCACAGTTCTCCCTCCAACGAGCTTGCTTGCCGACCTATACCTTGGGAAAACGTGTCAGAAAGCATGCCAGGAGTGAGGGTTGAAGTCCTCGGAGTACAAGCCCCGAAGATCGAAAGACTGATGACCAATACGAAGCAAATAGAATAAACCGT

mRNA sequence

ATTGGCCATCTTTTGGACTGTTTTGGGTCGCACCACAGTTCTCCCTCCAACGAGCTTGCTTGCCGACCTATACCTTGGGAAAACGTGTCAGAAAGCATGCCAGGAGTGAGGGTTGAAGTCCTCGGAGTACAAGCCCCGAAGATCGAAAGACTGATGACCAATACGAAGCAAATAGAATAAACCGT

Coding sequence (CDS)

ATGCCAGGAGTGAGGGTTGAAGTCCTCGGAGTACAAGCCCCGAAGATCGAAAGACTGATGACCAATACGAAGCAAATAGAATAA

Protein sequence

MPGVRVEVLGVQAPKIERLMTNTKQIE

Homology

[Close]

BLAST of MELO.jh031826.1 vs. NCBI nr
Match: MRQ44720.1 (hypothetical protein [Riemerella anatipestifer])

HSP 1 Score: 43.5 bits (101), Expect = 2.60e-04
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 1  MPGVRVEVLGVQAPKIERLMTNTKQIE 27
          MPGV VEVLG + PKIERLMTNT+Q E
Sbjct: 21 MPGVWVEVLGARDPKIERLMTNTEQRE 47

[Close]

BLAST of MELO.jh031826.1 vs. NCBI nr
Match: KAA0032047.1 (hypothetical protein E6C27_scaffold134G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 44.3 bits (103), Expect = 3.44e-04
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  MPGVRVEVLGVQAPKIERLMTNTKQIE 27
          MPGV VEVL V+APKIERLM+NTKQ E
Sbjct: 1  MPGVWVEVLRVRAPKIERLMSNTKQRE 27

[Close]

BLAST of MELO.jh031826.1 vs. NCBI nr
Match: WP_206746731.1 (hypothetical protein, partial [Helicobacter pylori])

HSP 1 Score: 43.5 bits (101), Expect = 4.17e-04
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 1  MPGVRVEVLGVQAPKIERLMTNTKQIE 27
          MPGV VEVLG + PKIERLMTNT+Q E
Sbjct: 1  MPGVWVEVLGARDPKIERLMTNTEQRE 27

[Close]

BLAST of MELO.jh031826.1 vs. ExPASy TrEMBL
Match: A0A5A7SRN5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001510 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 1.67e-04
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  MPGVRVEVLGVQAPKIERLMTNTKQIE 27
          MPGV VEVL V+APKIERLM+NTKQ E
Sbjct: 1  MPGVWVEVLRVRAPKIERLMSNTKQRE 27

The following BLAST results are available for this feature:

BLAST of MELO.jh031826.1 vs. NCBI nr


Match Name	E-value	Identity	Description
MRQ44720.1	2.60e-04	77.78	hypothetical protein [Riemerella anatipestifer]	[more]
KAA0032047.1	3.44e-04	81.48	hypothetical protein E6C27_scaffold134G001510 [Cucumis melo var. makuwa]	[more]
WP_206746731.1	4.17e-04	77.78	hypothetical protein, partial [Helicobacter pylori]	[more]

BLAST of MELO.jh031826.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh031826.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRN5	1.67e-04	81.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO.jh031826.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh031826.1.t1	MELO.jh031826.1.t1	mRNA