MELO.jh031800.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh031800.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	transcription factor AS1
Location	chr09: 9388864 .. 9389004 (+)
RNA-Seq Expression	MELO.jh031800.1
Synteny	MELO.jh031800.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAATAAAACCTACTTCATGGCCACTTCCAACGGGGGAATTCTTCAAACTGATTCATCTATTCCACCACCGTCTCTTCCTCCTTGGCTTTCCAACTCCAACGATGTCGTAGTTACCATCAAAGCCGAAAAAGCAAATTAA

mRNA sequence

ACTAATAAAACCTACTTCATGGCCACTTCCAACGGGGGAATTCTTCAAACTGATTCATCTATTCCACCACCGTCTCTTCCTCCTTGGCTTTCCAACTCCAACGATGTCGTAGTTACCATCAAAGCCGAAAAAGCAAATTAA

Coding sequence (CDS)

ATGGCCACTTCCAACGGGGGAATTCTTCAAACTGATTCATCTATTCCACCACCGTCTCTTCCTCCTTGGCTTTCCAACTCCAACGATGTCGTAGTTACCATCAAAGCCGAAAAAGCAAATTAA

Protein sequence

MATSNGGILQTDSSIPPPSLPPWLSNSNDVVVTIKAEKAN

Homology

[Close]

BLAST of MELO.jh031800.1 vs. NCBI nr
Match: KAG6580540.1 (Transcription factor AS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017292.1 Transcription factor AS1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.2 bits (139), Expect = 1.20e-08
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MATSNGGILQTDSSIPPPSLPPWLSNSN 28
          MATSNGG LQTDSS PPPSLPPWLSNSN
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSN 28

[Close]

BLAST of MELO.jh031800.1 vs. NCBI nr
Match: XP_022934855.1 (transcription factor AS1-like [Cucurbita moschata])

HSP 1 Score: 58.2 bits (139), Expect = 1.20e-08
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MATSNGGILQTDSSIPPPSLPPWLSNSN 28
          MATSNGG LQTDSS PPPSLPPWLSNSN
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSN 28

[Close]

BLAST of MELO.jh031800.1 vs. NCBI nr
Match: XP_022982614.1 (transcription factor AS1-like [Cucurbita maxima] >XP_022982615.1 transcription factor AS1-like [Cucurbita maxima])

HSP 1 Score: 58.2 bits (139), Expect = 1.32e-08
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MATSNGGILQTDSSIPPPSLPPWLSNSN 28
          MATSNGG LQTDSS PPPSLPPWLSNSN
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSN 28

[Close]

BLAST of MELO.jh031800.1 vs. NCBI nr
Match: XP_008442545.1 (PREDICTED: transcription factor AS1 [Cucumis melo] >KAA0044093.1 transcription factor AS1 [Cucumis melo var. makuwa] >TYK25044.1 transcription factor AS1 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.32e-08
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MATSNGGILQTDSSIPPPSLPPWLSNSN 28
          MATSNGG LQTDSS PPPSLPPWLSNSN
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSN 28

[Close]

BLAST of MELO.jh031800.1 vs. NCBI nr
Match: XP_038903104.1 (transcription factor AS1-like [Benincasa hispida] >XP_038903105.1 transcription factor AS1-like [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 1.32e-08
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MATSNGGILQTDSSIPPPSLPPWLSNSN 28
          MATSNGG LQTDSS PPPSLPPWLSNSN
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSN 28

[Close]

BLAST of MELO.jh031800.1 vs. ExPASy TrEMBL
Match: A0A6J1F8X8 (transcription factor AS1-like OS=Cucurbita moschata OX=3662 GN=LOC111441895 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.80e-09
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MATSNGGILQTDSSIPPPSLPPWLSNSN 28
          MATSNGG LQTDSS PPPSLPPWLSNSN
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSN 28

[Close]

BLAST of MELO.jh031800.1 vs. ExPASy TrEMBL
Match: A0A6J1J530 (transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111481437 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.37e-09
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MATSNGGILQTDSSIPPPSLPPWLSNSN 28
          MATSNGG LQTDSS PPPSLPPWLSNSN
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSN 28

[Close]

BLAST of MELO.jh031800.1 vs. ExPASy TrEMBL
Match: A0A6J1I2B9 (transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111470250 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.37e-09
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MATSNGGILQTDSSIPPPSLPPWLSNSN 28
          MATSNGG LQTDSS PPPSLPPWLSNSN
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSN 28

[Close]

BLAST of MELO.jh031800.1 vs. ExPASy TrEMBL
Match: A0A6J1G8P0 (transcription factor AS1-like OS=Cucurbita moschata OX=3662 GN=LOC111451947 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.37e-09
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MATSNGGILQTDSSIPPPSLPPWLSNSN 28
          MATSNGG LQTDSS PPPSLPPWLSNSN
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSN 28

[Close]

BLAST of MELO.jh031800.1 vs. ExPASy TrEMBL
Match: A0A5D3DN74 (Transcription factor AS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001650 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.37e-09
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 1  MATSNGGILQTDSSIPPPSLPPWLSNSN 28
          MATSNGG LQTDSS PPPSLPPWLSNSN
Sbjct: 1  MATSNGGFLQTDSSTPPPSLPPWLSNSN 28

The following BLAST results are available for this feature:

BLAST of MELO.jh031800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580540.1	1.20e-08	92.86	Transcription factor AS1, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_022934855.1	1.20e-08	92.86	transcription factor AS1-like [Cucurbita moschata]	[more]
XP_022982614.1	1.32e-08	92.86	transcription factor AS1-like [Cucurbita maxima] >XP_022982615.1 transcription f...	[more]
XP_008442545.1	1.32e-08	92.86	PREDICTED: transcription factor AS1 [Cucumis melo] >KAA0044093.1 transcription f...	[more]
XP_038903104.1	1.32e-08	92.86	transcription factor AS1-like [Benincasa hispida] >XP_038903105.1 transcription ...	[more]

BLAST of MELO.jh031800.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh031800.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8X8	5.80e-09	92.86	transcription factor AS1-like OS=Cucurbita moschata OX=3662 GN=LOC111441895 PE=4...	[more]
A0A6J1J530	6.37e-09	92.86	transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111481437 PE=4 S...	[more]
A0A6J1I2B9	6.37e-09	92.86	transcription factor AS1-like OS=Cucurbita maxima OX=3661 GN=LOC111470250 PE=4 S...	[more]
A0A6J1G8P0	6.37e-09	92.86	transcription factor AS1-like OS=Cucurbita moschata OX=3662 GN=LOC111451947 PE=4...	[more]
A0A5D3DN74	6.37e-09	92.86	Transcription factor AS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of MELO.jh031800.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh031800.1.t1	MELO.jh031800.1.t1	mRNA