MELO.jh031723.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh031723.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr08: 30589980 .. 30591135 (+)
RNA-Seq ExpressionMELO.jh031723.1
SyntenyMELO.jh031723.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTTATTTTGCTGTTCTTCCATCTTTCTTCTCTTCCTCTCCCTATATTAAACTCCCTCCATCTTCATCACAAACTCAACACAAACTTTAATTTTCATTGATTGTTAGAAAAAGTTGTCATTTGCTTTGATCACCACAGAGAATTTTCCAATCTCTCTCTTCTTTCTTGAACAGGAGGAAGAGGGAAGATTCAAATAAATTAGAAAAGCTTTATACCTAGAAGAAGCTCACCAATGGTGAAAAACATCGTGAAATTGAATTCTTGGGTTGAGGTTGCTCCAAATCTCATCTCTTACCTACAGAAACCCTCTACCATCCCATCGTTGGAACCCATTTTTGAAGACATCGTCGAGGAATATCCCGATGACTCATAACCCCCAATTCTTTTACTCGTATTTGCAGGTTTCAATTCCTTTTCTCGTGAACATATGGATCTCTGTTCTTAAAGAGATGGAAGCTCAAGTGTAAAGATGATCTAATAAAAAAAAAGTTTCTCCCAACTGAACCAACAAACCCTAACTTGTTGGAATTCCAGGCCATTTCGTTCACATGGAAAAATTTTAAAGTTTAAATCATTTTCACATGTGATGAAAGGCATGGCGTAATTGTTAACTTTCCACGTGGGGTTGGTTTGTTGACTCACTCGGTTTCATCCTTCTTTATATAAAGGAAAGACTCCATTTTCCACTTCATCAAACTCAAATCATCTTCCTCCATTTCTGATAACCAGAAAAGAAAAAGAATCTCATCACTTGAATTTTTCTTTCTGGGATAGAATCAAAGCTTCAGTTGTGAGTTCAAAACAAAACAAATGGCTGAGAAAGCTCAGATGTTGAACTGGATGGAGAAAGCACCAGCTTTATTTGTTCTCCCAAACAGAGCTTCTTCCTCTCCTGCTTTAGAAACCATTAAAGAAGAGGAAGAAACGGAGGATTGTAATGAGAAAGAAAGGTCCTAAACCTTTTCTTTCCTTCTCTCTTTCTTTATTCTGCACAATTTACAACTCTAATTTGCTCTTCTGTAATACTAATAACTGTTTAGTATAAGAATTTGAACCTTGTTATGTTAATGGGGTTTCTTTTCTTTGTCAAGAACTGAAATCTATTTTGGAGAAACTTGTAGAAGAAAAAGATGAAATGAAGTATAAAAGTTTTAA

mRNA sequence

TCCTTATTTTGCTGTTCTTCCATCTTTCTTCTCTTCCTCTCCCTATATTAAACTCCCTCCATCTTCATCACAAACTCAACACAAACTTTAATTTTCATTGATTGTTAGAAAAAGTTGTCATTTGCTTTGATCACCACAGAGAATTTTCCAATCTCTCTCTTCTTTCTTGAACAGGAGGAAGAGGGAAGATTCAAATAAATTAGAAAAGCTTTATACCTAGAAGAAGCTCACCAATGGTGAAAAACATCGTGAAATTGAATTCTTGGGTTGAGGTTGCTCCAAATCTCATCTCTTACCTACAGAAACCCTCTACCATCCCATCGTTGGAACCCATTTTTGAAGACATCGTCGAGGAATATCCCGATGACTCATAACCCCCAATTCTTTTACTCGTATTTGCAGGTTTCAATTCCTTTTCTCGTGAACATATGGATCTCTGTTCTTAAAGAGATGGAAGCTCAAGTGTAAAGATGATCTAATAAAAAAAAAGTTTCTCCCAACTGAACCAACAAACCCTAACTTGTTGGAATTCCAGGCCATTTCGTTCACATGGAAAAATTTTAAAGTTTAAATCATTTTCACATGTGATGAAAGGCATGGCGTAATTGTTAACTTTCCACGTGGGGTTGGTTTGTTGACTCACTCGGTTTCATCCTTCTTTATATAAAGGAAAGACTCCATTTTCCACTTCATCAAACTCAAATCATCTTCCTCCATTTCTGATAACCAGAAAAGAAAAAGAATCTCATCACTTGAATTTTTCTTTCTGGGATAGAATCAAAGCTTCAGTTGTGAGTTCAAAACAAAACAAATGGCTGAGAAAGCTCAGATGTTGAACTGGATGGAGAAAGCACCAGCTTTATTTGTTCTCCCAAACAGAGCTTCTTCCTCTCCTGCTTTAGAAACCATTAAAGAAGAGGAAGAAACGGAGGATTGTAATGAGAAAGAAAGGTCCTAAACCTTTTCTTTCCTTCTCTCTTTCTTTATTCTGCACAATTTACAACTCTAATTTGCTCTTCTGTAATACTAATAACTGTTTAGTATAAGAATTTGAACCTTGTTATGTTAATGGGGTTTCTTTTCTTTGTCAAGAACTGAAATCTATTTTGGAGAAACTTGTAGAAGAAAAAGATGAAATGAAGTATAAAAGTTTTAA

Coding sequence (CDS)

ATGGCTGAGAAAGCTCAGATGTTGAACTGGATGGAGAAAGCACCAGCTTTATTTGTTCTCCCAAACAGAGCTTCTTCCTCTCCTGCTTTAGAAACCATTAAAGAAGAGGAAGAAACGGAGGATTGTAATGAGAAAGAAAGGTCCTAA

Protein sequence

MAEKAQMLNWMEKAPALFVLPNRASSSPALETIKEEEETEDCNEKERS
Homology
[Close]
BLAST of MELO.jh031723.1 vs. NCBI nr
Match: PRQ43539.1 (hypothetical protein RchiOBHm_Chr3g0469561 [Rosa chinensis])

HSP 1 Score: 45.8 bits (107), Expect = 6.46e-05
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 1  MAEKAQML-NWMEKAPALFVLPNRASSSPALETIKEE--EETEDCNEK 45
          M+EK + L +W+E APAL + PNR+S+SP LETI EE  +E ED ++K
Sbjct: 1  MSEKMRFLVSWIEVAPALLIRPNRSSTSPELETITEEWEQEAEDYDQK 48

[Close]
BLAST of MELO.jh031723.1 vs. NCBI nr
Match: KAE8099591.1 (hypothetical protein FH972_017562 [Carpinus fangiana])

HSP 1 Score: 43.9 bits (102), Expect = 3.98e-04
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 0 

Query: 3  EKAQMLNWMEKAPALFVLPNRASSSPALETIKEEEETED 41
          E  ++ +W+E APAL + P +A +SP LETI EEEE E+
Sbjct: 16 EMRKLSSWIEVAPALLISPTKAPTSPVLETIPEEEEAEE 54

[Close]
BLAST of MELO.jh031723.1 vs. NCBI nr
Match: XP_031247672.1 (uncharacterized protein LOC116105383 [Pistacia vera])

HSP 1 Score: 43.1 bits (100), Expect = 6.53e-04
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1  MAEKAQMLN-WMEKAPALFVLPNRASSSPALETIKEEEETE 40
          MAE+ + L+ WME APAL + P R  +SP+LETI+EEE  E
Sbjct: 1  MAEETRCLSIWMEVAPALLISPARICASPSLETIEEEESEE 41

[Close]
BLAST of MELO.jh031723.1 vs. ExPASy TrEMBL
Match: A0A2P6RAT0 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0469561 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.13e-05
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 1  MAEKAQML-NWMEKAPALFVLPNRASSSPALETIKEE--EETEDCNEK 45
          M+EK + L +W+E APAL + PNR+S+SP LETI EE  +E ED ++K
Sbjct: 1  MSEKMRFLVSWIEVAPALLIRPNRSSTSPELETITEEWEQEAEDYDQK 48

[Close]
BLAST of MELO.jh031723.1 vs. ExPASy TrEMBL
Match: A0A5N6RJI9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017562 PE=4 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 1.93e-04
Identity = 20/39 (51.28%), Postives = 28/39 (71.79%), Query Frame = 0 

Query: 3  EKAQMLNWMEKAPALFVLPNRASSSPALETIKEEEETED 41
          E  ++ +W+E APAL + P +A +SP LETI EEEE E+
Sbjct: 16 EMRKLSSWIEVAPALLISPTKAPTSPVLETIPEEEEAEE 54

The following BLAST results are available for this feature:
BLAST of MELO.jh031723.1 vs. NCBI nr
Match NameE-valueIdentityDescription
PRQ43539.16.46e-0554.17hypothetical protein RchiOBHm_Chr3g0469561 [Rosa chinensis][more]
KAE8099591.13.98e-0451.28hypothetical protein FH972_017562 [Carpinus fangiana][more]
XP_031247672.16.53e-0456.10uncharacterized protein LOC116105383 [Pistacia vera][more]
BLAST of MELO.jh031723.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh031723.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P6RAT03.13e-0554.17Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0469561 PE=4... [more]
A0A5N6RJI91.93e-0451.28Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017562 PE=4 SV=1[more]
BLAST of MELO.jh031723.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh031723.1.t1MELO.jh031723.1.t1mRNA