MELO.jh031714.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh031714.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionDNA helicase
Locationchr08: 29177894 .. 29180444 (+)
RNA-Seq ExpressionMELO.jh031714.1
SyntenyMELO.jh031714.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CACACTCCATTTTCCTTCTTCAAAATCCCTCCCCTCACTAACGACGCACGGCAAAAACCCCAACCTTAACCCCATTCTTCTCATCTCCACATCCTTTCTTCTCGGTGACAGAGACCCACAGTGAGAAGACCCATATCGTTGCCGGTGAGTTCTTGATCTTTCATTTTCCATTTCTTCTCCCTTCATTTATCTCTTCCCCTGTGCACAGTCCCACAAATTATCTTTATAAATTCAAGAGAAAGTAGGGTTCCTAAAGACATAAAGAGCATCGATTTCTTGTCTTTTTTGCCTCTCCCTTTCTCTATGCATCAATTTGATTTTATGATCTTAATCATTCCTCCAAAGTTTCAACTAGTGGCTTTCTCCTCCTAGGCATACTCAAATTCTTAACTCCATTGTTCTTATTGTTACTATTATTATCATTATTATTATCAAATTTATTGATGTTTTGGATAAAATTCTTAGGGTTTAGTTTATGTTGGAAAAGAGAGACAAAGGGGTTGAAAAATTGAGTAGAAAATCTATCACATATGTTCATCAAGATACATGGCTTACAATGTGTTTGATTCTTTAAAGGTACCGTAACTCAAAAACATATTTTAACTATTTTTTTGATTCTTTAAAGGTATATCAATGGTTTTGTGAAATATATTGTTGGCTATGTGATGAACCATTTTGGTAGCCTACAATGTGTTTGATGAAATGCCTCAATGAAGCATTTGGTTGATTTTTAGTTGATTTTTAATTGATTTTTACTTGAATCTCATAAGTTTGGATGTAAAGCAATATTATTATTCTTTTTTGTGTTACTTTGTAGTTATCTTATTCTTTCATTGAGCATGACTTTTCTTAACAAAAATCATTGAAAAAAATAATCAATAGTTTGAAATTAGAAGCTTAGAATCTACAAAATGCTATAACCTATCACAAGAAAAGTGAGATGGGGAAACCTGGAATAAAACCAATCATGAAATCCTATTTCAACAAGCATTTTCACAATAGCTTGGTTTTCCCTTTTTCTTCTTATTCTTATGTTTTCATTTCTCTTTTATTTATTTATTGGGTTTTTTTTTAGACTTTTTGAGGCAAATCCCTTTTGGGTCTTTGAGCTATTGCTTTTTTATGTCATTTTCCTTTTCTGGGTTTCTTTCAGAAAAGGGTTTTATGCCTAATAGCTTGTAGAAAAAAACCAATCATATATATATTTTCGCATTTTTGTATCATTTTTGTGAATAAATTAGTTTTTTGCCCAGCTTTTTTGTTTTGTAATTTGCTTTATCTACTTGAGGAGAAGTTTTTAAAAGGAAGAGAAGGATATGGGCAAGCAAGGGCCTTGTTATCACTTTGGAGTTACAACTGCAAGTTTTTCAAACTATAATTGACAACATATTGAGTCTAAGTTTTAATTCCATCATCTTCCCATTTCTTTTGAGGTTTTACTGAACCCAAATATAAAGTTTGAACTCTGTTATGTTTGTATTAATTCCCCAATGACATCAGAGAAAACTATTCTTTAGTGACGCCCACATTGTATTCCTTTGTAATGCTGGCATGTTTTGGTTTTGAATTAGTGTCTCCATGAGAATTAGTTTTGTACTTGAATTTCTTGTCAATTGTCTTCATTTGGTGTCTCCCATGGAAATATTTCTATCAGTCCTACAATTTTTACATTGGAACAAGCATTTTCAAATAAAGTATATTTGTGTATATTAATACATAATTATATAACAGATAACTACTTTCGAAGATGGTTGAAATATCTACAATAGAACCTAATATAGAAAGATATGAAGATGAAATATAGGAGAAGAGAAAAATCAATTGAAGAACATGAAGATGAAACCATTTCTGCACAAGGTAACTTTAATTTGAGGATTTAATTAAACTGCATTAGATGACCAGTAGTTCTGTGAGTGCTCAATTTTATTTTGCTTTCTGCTTATATTGGTTTGAAGTTTTTTTTTGCATTGTTTTCTATAAATTTTTTTTCAATAAATGTGGATGTTTTTATTCCATTCCAAAAGCTGCCTTATTATTTTTACTTGTTTTTGCAATCCAGCAAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGTGTTGTTTGCATTGATGAGTTTGACAAAATCAGATCAAAGGATAGGTAACCTAAAAGACAGAAGACGTTCAATTCTTTTCTTCTTTCTATTAAGGTTTGTTGCTGTTTTTTAAATGATATTGTTCTTTGATCATTCTCTTGAGTTTTTAGAAATGTTATCCATTATTGCAGACTGTGCTGATTAAATGACATTACTTATACATTTTGTTTGTGATCCAAGTTGCACCTCTTCTGGCTAGATCCAATTTGGTCATTACCAGGAATATAGATTGGGCAACCAAACTCCTAGCATCATCTTAAGAATGCAAAGAGTGCTTGTGTAATTTGATAGATCCTTTTGTTGAATTGTGTTTCTAGCCTTTTAACTTTCCTTTTTTTTAGCAAAAATCATGTTGATGATCAAACACACTTTTCTCATTTAATGGTATCTTGGCAACCCCTCCCT

mRNA sequence

CACACTCCATTTTCCTTCTTCAAAATCCCTCCCCTCACTAACGACGCACGGCAAAAACCCCAACCTTAACCCCATTCTTCTCATCTCCACATCCTTTCTTCTCGGTGACAGAGACCCACAGTGAGAAGACCCATATCGTTGCCGATAACTACTTTCGAAGATGGTTGAAATATCTACAATAGAACCTAATATAGAAAGATATGAAGATGAAATATAGGAGAAGAGAAAAATCAATTGAAGAACATGAAGATGAAACCATTTCTGCACAAGCAAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGTGTTGTTTGCATTGATGAGTTTGACAAAATCAGATCAAAGGATAGACTGTGCTGATTAAATGACATTACTTATACATTTTGTTTGTGATCCAAGTTGCACCTCTTCTGGCTAGATCCAATTTGGTCATTACCAGGAATATAGATTGGGCAACCAAACTCCTAGCATCATCTTAAGAATGCAAAGAGTGCTTGTGTAATTTGATAGATCCTTTTGTTGAATTGTGTTTCTAGCCTTTTAACTTTCCTTTTTTTTAGCAAAAATCATGTTGATGATCAAACACACTTTTCTCATTTAATGGTATCTTGGCAACCCCTCCCT

Coding sequence (CDS)

ATGAAGATGAAACCATTTCTGCACAAGCAAGAGTTTTATCTTGAAGGAGGTGCAATGGTTTTGGCTGATGGAGGTGTTGTTTGCATTGATGAGTTTGACAAAATCAGATCAAAGGATAGACTGTGCTGA

Protein sequence

MKMKPFLHKQEFYLEGGAMVLADGGVVCIDEFDKIRSKDRLC
Homology
BLAST of MELO.jh031714.1 vs. NCBI nr
Match: RUP46109.1 (LOW QUALITY PROTEIN: MCM2/3/5 family-domain-containing protein [Jimgerdemannia flammicorona])

HSP 1 Score: 66.6 bits (161), Expect = 3.10e-11
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 5   PFLHKQEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 41
           PF  ++EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 476 PFYPQREFYLEGGAMVLADGGVVCIDEFDKMRDEDRV 512

BLAST of MELO.jh031714.1 vs. NCBI nr
Match: KAG4256513.1 (minichromosome maintenance protein 5 (cell division control protein 46) [Fusarium proliferatum])

HSP 1 Score: 62.4 bits (150), Expect = 8.59e-11
Identity = 27/32 (84.38%), Postives = 32/32 (100.00%), Query Frame = 0

Query: 10 QEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 41
          +EFYLEGGAMVLADGGVVCIDEFDK+R++DR+
Sbjct: 57 REFYLEGGAMVLADGGVVCIDEFDKMRAEDRV 88

BLAST of MELO.jh031714.1 vs. NCBI nr
Match: KUF81235.1 (DNA replication licensing factor MCM5 [Phytophthora nicotianae])

HSP 1 Score: 62.4 bits (150), Expect = 9.78e-11
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 9  KQEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 41
          K EFYLEGGAMVLADGGVVCIDEFDK+R  DR+
Sbjct: 20 KGEFYLEGGAMVLADGGVVCIDEFDKMRESDRV 52

BLAST of MELO.jh031714.1 vs. NCBI nr
Match: KAF5759140.1 (putative DNA helicase [Helianthus annuus])

HSP 1 Score: 61.2 bits (147), Expect = 1.09e-10
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 0

Query: 10 QEFYLEGGAMVLADGGVVCIDEFDKIRSKDR 40
          +EFYLEGGAMVLADGGVVCIDEFDK+R +DR
Sbjct: 61 REFYLEGGAMVLADGGVVCIDEFDKMRPEDR 91

BLAST of MELO.jh031714.1 vs. NCBI nr
Match: KAF2859776.1 (MCM-domain-containing protein [Piedraia hortae CBS 480.64])

HSP 1 Score: 64.7 bits (156), Expect = 1.48e-10
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 8   HKQEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 41
           H +EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 417 HTREFYLEGGAMVLADGGVVCIDEFDKMRDEDRV 450

BLAST of MELO.jh031714.1 vs. ExPASy Swiss-Prot
Match: P29496 (Minichromosome maintenance protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MCM5 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.3e-10
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 10  QEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 42
           +EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 460 REFYLEGGAMVLADGGVVCIDEFDKMRDEDRV 491

BLAST of MELO.jh031714.1 vs. ExPASy Swiss-Prot
Match: O80786 (DNA replication licensing factor MCM5 OS=Arabidopsis thaliana OX=3702 GN=MCM5 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-09
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 10  QEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 42
           +EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 419 REFYLEGGAMVLADGGVVCIDEFDKMRPEDRV 450

BLAST of MELO.jh031714.1 vs. ExPASy Swiss-Prot
Match: B8AEH3 (DNA replication licensing factor MCM5 OS=Oryza sativa subsp. indica OX=39946 GN=MCM5 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-09
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 10  QEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 42
           +EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 420 REFYLEGGAMVLADGGVVCIDEFDKMRPEDRV 451

BLAST of MELO.jh031714.1 vs. ExPASy Swiss-Prot
Match: Q6KAJ4 (DNA replication licensing factor MCM5 OS=Oryza sativa subsp. japonica OX=39947 GN=MCM5 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-09
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 10  QEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 42
           +EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 420 REFYLEGGAMVLADGGVVCIDEFDKMRPEDRV 451

BLAST of MELO.jh031714.1 vs. ExPASy Swiss-Prot
Match: P41389 (DNA replication licensing factor mcm5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mcm5 PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-09
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 10  QEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 42
           +EFYLEGGAMVLADGG+VCIDEFDK+R +DR+
Sbjct: 416 REFYLEGGAMVLADGGIVCIDEFDKMRDEDRV 447

BLAST of MELO.jh031714.1 vs. ExPASy TrEMBL
Match: A0A433D5K1 (DNA helicase OS=Jimgerdemannia flammicorona OX=994334 GN=BC936DRAFT_147348 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.50e-11
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 5   PFLHKQEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 41
           PF  ++EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 476 PFYPQREFYLEGGAMVLADGGVVCIDEFDKMRDEDRV 512

BLAST of MELO.jh031714.1 vs. ExPASy TrEMBL
Match: A0A251RXW4 (DNA helicase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g0509141 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.47e-11
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 0

Query: 10 QEFYLEGGAMVLADGGVVCIDEFDKIRSKDR 40
          +EFYLEGGAMVLADGGVVCIDEFDK+R +DR
Sbjct: 44 REFYLEGGAMVLADGGVVCIDEFDKMRPEDR 74

BLAST of MELO.jh031714.1 vs. ExPASy TrEMBL
Match: A0A0W8CAY5 (DNA helicase OS=Phytophthora nicotianae OX=4790 GN=AM587_10006451 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.73e-11
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 9  KQEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 41
          K EFYLEGGAMVLADGGVVCIDEFDK+R  DR+
Sbjct: 20 KGEFYLEGGAMVLADGGVVCIDEFDKMRESDRV 52

BLAST of MELO.jh031714.1 vs. ExPASy TrEMBL
Match: A0A6A7BWP9 (DNA helicase OS=Piedraia hortae CBS 480.64 OX=1314780 GN=K470DRAFT_218511 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.17e-11
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 8   HKQEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 41
           H +EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 417 HTREFYLEGGAMVLADGGVVCIDEFDKMRDEDRV 450

BLAST of MELO.jh031714.1 vs. ExPASy TrEMBL
Match: A0A397H5P5 (DNA helicase OS=Aspergillus thermomutatus OX=41047 GN=MCM5 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.17e-11
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 8   HKQEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 41
           H +EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 410 HTREFYLEGGAMVLADGGVVCIDEFDKMRDEDRV 443

BLAST of MELO.jh031714.1 vs. TAIR 10
Match: AT2G07690.1 (Minichromosome maintenance (MCM2/3/5) family protein )

HSP 1 Score: 62.8 bits (151), Expect = 7.7e-11
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 10  QEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 42
           +EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 419 REFYLEGGAMVLADGGVVCIDEFDKMRPEDRV 450

BLAST of MELO.jh031714.1 vs. TAIR 10
Match: AT2G07690.2 (Minichromosome maintenance (MCM2/3/5) family protein )

HSP 1 Score: 62.8 bits (151), Expect = 7.7e-11
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0

Query: 10  QEFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 42
           +EFYLEGGAMVLADGGVVCIDEFDK+R +DR+
Sbjct: 417 REFYLEGGAMVLADGGVVCIDEFDKMRPEDRV 448

BLAST of MELO.jh031714.1 vs. TAIR 10
Match: AT2G14050.1 (minichromosome maintenance 9 )

HSP 1 Score: 48.1 bits (113), Expect = 2.0e-06
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 0

Query: 11  EFYLEGGAMVLADGGVVCIDEFDKIRSKDR 41
           E+ LE GA+VLADGG+ CIDEFD +R  DR
Sbjct: 401 EWMLEAGALVLADGGLCCIDEFDSMREHDR 430

BLAST of MELO.jh031714.1 vs. TAIR 10
Match: AT5G46280.1 (Minichromosome maintenance (MCM2/3/5) family protein )

HSP 1 Score: 48.1 bits (113), Expect = 2.0e-06
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 0

Query: 14  LEGGAMVLADGGVVCIDEFDKIRSKDRL 42
           LE GAMVLAD G+VCIDEFDK+  +DR+
Sbjct: 383 LEAGAMVLADKGIVCIDEFDKMNDQDRV 410

BLAST of MELO.jh031714.1 vs. TAIR 10
Match: AT5G44635.1 (minichromosome maintenance (MCM2/3/5) family protein )

HSP 1 Score: 45.8 bits (107), Expect = 9.8e-06
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 0

Query: 11  EFYLEGGAMVLADGGVVCIDEFDKIRSKDRL 42
           EF +E GA++LAD G+ CIDEFDK+  KD++
Sbjct: 440 EFCIEAGALMLADNGICCIDEFDKMDIKDQV 470

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RUP46109.13.10e-1178.38LOW QUALITY PROTEIN: MCM2/3/5 family-domain-containing protein [Jimgerdemannia f... [more]
KAG4256513.18.59e-1184.38minichromosome maintenance protein 5 (cell division control protein 46) [Fusariu... [more]
KUF81235.19.78e-1184.85DNA replication licensing factor MCM5 [Phytophthora nicotianae][more]
KAF5759140.11.09e-1087.10putative DNA helicase [Helianthus annuus][more]
KAF2859776.11.48e-1082.35MCM-domain-containing protein [Piedraia hortae CBS 480.64][more]
Match NameE-valueIdentityDescription
P294968.3e-1084.38Minichromosome maintenance protein 5 OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
O807861.1e-0984.38DNA replication licensing factor MCM5 OS=Arabidopsis thaliana OX=3702 GN=MCM5 PE... [more]
B8AEH31.1e-0984.38DNA replication licensing factor MCM5 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
Q6KAJ41.1e-0984.38DNA replication licensing factor MCM5 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
P413891.1e-0981.25DNA replication licensing factor mcm5 OS=Schizosaccharomyces pombe (strain 972 /... [more]
Match NameE-valueIdentityDescription
A0A433D5K11.50e-1178.38DNA helicase OS=Jimgerdemannia flammicorona OX=994334 GN=BC936DRAFT_147348 PE=3 ... [more]
A0A251RXW43.47e-1187.10DNA helicase OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr16g0509141 PE=4 SV=1[more]
A0A0W8CAY54.73e-1184.85DNA helicase OS=Phytophthora nicotianae OX=4790 GN=AM587_10006451 PE=3 SV=1[more]
A0A6A7BWP97.17e-1182.35DNA helicase OS=Piedraia hortae CBS 480.64 OX=1314780 GN=K470DRAFT_218511 PE=3 S... [more]
A0A397H5P57.17e-1182.35DNA helicase OS=Aspergillus thermomutatus OX=41047 GN=MCM5 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G07690.17.7e-1184.38Minichromosome maintenance (MCM2/3/5) family protein [more]
AT2G07690.27.7e-1184.38Minichromosome maintenance (MCM2/3/5) family protein [more]
AT2G14050.12.0e-0666.67minichromosome maintenance 9 [more]
AT5G46280.12.0e-0671.43Minichromosome maintenance (MCM2/3/5) family protein [more]
AT5G44635.19.8e-0658.06minichromosome maintenance (MCM2/3/5) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 3..42
e-value: 9.5E-14
score: 53.3
IPR001208MCM domainPFAMPF00493MCMcoord: 9..40
e-value: 3.3E-12
score: 46.0
IPR001208MCM domainPROSITEPS50051MCM_2coord: 11..42
score: 15.306732
IPR018525Mini-chromosome maintenance, conserved sitePROSITEPS00847MCM_1coord: 25..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh031714.1.t1MELO.jh031714.1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0006260 DNA replication
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding