MELO.jh031613.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh031613.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	transmembrane protein 208 homolog
Location	chr08: 13188037 .. 13189430 (-)
RNA-Seq Expression	MELO.jh031613.1
Synteny	MELO.jh031613.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACGCCAACCTATGGTGATGACGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTAGGTATGTCTTCTTTCTTCTTAATGTATAACCATTACATGTTAGTTTCATGCATGTTTTTATCTCCATTACATAAAGTATAATTGTTGAGTATAGACCTGGCATATTTAATTGTTCTGTGACCCAAGTTTAAGATGAGCGGTTGCTCTGAAACTTGCTAAGAATTGGTATGAAATTGTTCACCAAATATCAAATTTCATGAGGAAGCTGAAGCTATTTTTCTTGATCGTCATTCTAAAATTCAGTCTAAAATGCTTGAAATGGAAGAAACTAATGATTTGCTTGGCCTAACTCTCATTTCTTCCCACTCTTCAAAAGCCCAGCATCTTTAAAGTTAGCCCTTTTGTTGGGCCTTGGTTCTACGATCTCTGGGTGCTTTTTTCTTCTTCCTTCATATTTTAAATATTGGCCATATCAACCTAAAATTGTGGCATATTATTCTATTTCAGTTTCCTCTGTCGTTATCATTTCCTTTTCGCCTGAATTTCATTACTAAATTGACTTTAATTTACATAATTATAAATTGATATTTAGTATAATTGTCTACTGGCTTAATAACTCTCCATGAGGGCAATATACACAAAAATCACGGTTGTTTAGTCATTTGCCTTACTGGATCTTTCAATTTCTTTCTTGAACTTATTTCAAATTGGATAGTGATATATAAGTAAGCTTGCAGCTTCAAAAGGAATAGGCTTATTGGGTTTTTAAGTTTTCTGGGAAATGGTTCTGCTCCACTTGTTGTTTTGATCAATTGATGTGTTTATCATCACCAATGTGACAGAACAATTCCATGGTAATGTTTTTGGCCTACATAATATTGAGTGGTTTTATGTGGGATTTTTCCATTGAGTGGCAAAGGTAGTGTTTATAATATGGATGAAGTAATTGAAAGGAACAGATGACTTTTCAGTCTCTTTTTTTTCTTTTAATCGTTTTATGAACCTTGTTCTGTCGCCATCTTTTTTTTGGTGTAAAACTAAGCATCTCTTCTCTCATTTCAACCTTTCTTTTTTAGTCAGTAATTGGTGATCTCTTATGTAACAAGCTTTTGCTGTTCGTGGCTCTTCCTTATTCTTTTGCCAAAAAAAATTATGGATTGACTTTAAAAAAGAGGTTGGAATCCAATATAGCTAGCCTTCCATCTGTCAACGATTTTTTGACATTTCAATAACTAATCGAAACATCTTGATGGTTTTTCTTGTTTTTTGCAACTACATGCATGATGTGATCTATATTACAAGCTTTGTGCAAATATCGTCAATCCTCTCCGGAAAGTTTTAGTACACCTACCTTGTGGTAAGGTCTATTCACTTTTGA

mRNA sequence

ATGGCAACGCCAACCTATGGTGATGACGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTAGCTACATGCATGATGTGATCTATATTACAAGCTTTGTGCAAATATCGTCAATCCTCTCCGGAAAGTTTTAGTACACCTACCTTGTGGTAAGGTCTATTCACTTTTGA

Coding sequence (CDS)

ATGGCAACGCCAACCTATGGTGATGACGGTGAACTTCTAGATGGTGGATTTGATATGAGTACTGGTGGAATTTGTAGCTACATGCATGATGTGATCTATATTACAAGCTTTGTGCAAATATCGTCAATCCTCTCCGGAAAGTTTTAG

Protein sequence

MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF

Homology

[Close]

BLAST of MELO.jh031613.1 vs. NCBI nr
Match: XP_022946520.1 (transmembrane protein 208 homolog [Cucurbita moschata] >XP_022999772.1 transmembrane protein 208 homolog [Cucurbita maxima] >KAG6599131.1 Transmembrane protein 208, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030072.1 Transmembrane protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.9 bits (237), Expect = 2.44e-23
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 48
           MA PTYGDDGELLDGGFDMSTGGIC YMHDVIYITSFVQI SILSGKF
Sbjct: 68  MADPTYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKF 115

[Close]

BLAST of MELO.jh031613.1 vs. NCBI nr
Match: KAA0043099.1 (transmembrane protein 208-like protein [Cucumis melo var. makuwa] >TYJ96389.1 transmembrane protein 208-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 4.73e-23
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1  MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 48
          MA PTYGDDGELLDGGFDMST GIC YMHDVIYITSFVQI SILSGKF
Sbjct: 1  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKF 48

[Close]

BLAST of MELO.jh031613.1 vs. NCBI nr
Match: XP_038889500.1 (transmembrane protein 208 homolog [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 4.88e-23
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 48
           MA PTYGDDGELLDGGFDMSTGGIC Y+HDVIYITSFVQI SILSGKF
Sbjct: 68  MANPTYGDDGELLDGGFDMSTGGICGYLHDVIYITSFVQIMSILSGKF 115

[Close]

BLAST of MELO.jh031613.1 vs. NCBI nr
Match: XP_021818858.1 (transmembrane protein 208 homolog [Prunus avium] >XP_021818859.1 transmembrane protein 208 homolog [Prunus avium] >XP_021818860.1 transmembrane protein 208 homolog [Prunus avium])

HSP 1 Score: 94.0 bits (232), Expect = 1.39e-22
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 48
           MATP+YGDDGELLDGGFDM+TGG+C YMHDVIYITSFVQ+ SI+SGKF
Sbjct: 68  MATPSYGDDGELLDGGFDMTTGGVCGYMHDVIYITSFVQVMSIISGKF 115

[Close]

BLAST of MELO.jh031613.1 vs. NCBI nr
Match: XP_022153357.1 (transmembrane protein 208 homolog [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 1.39e-22
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 48
           MA PTYGDDGELLDGGFDMSTGGIC Y+HDVIYITSFVQI SI+SGKF
Sbjct: 68  MANPTYGDDGELLDGGFDMSTGGICGYLHDVIYITSFVQIMSIVSGKF 115

[Close]

BLAST of MELO.jh031613.1 vs. ExPASy Swiss-Prot
Match: Q6NYP0 (Transmembrane protein 208 OS=Danio rerio OX=7955 GN=tmem208 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-04
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMS-TGGICSYMHDVIYITSFVQISSILSGKF 49
           MA P + +DG LLDGG D++   G+  ++ DVI +T+ VQ+ S LS  F
Sbjct: 74  MAKPAFAEDGSLLDGGIDLNMEQGMAEHLKDVILLTAIVQVLSTLSSYF 122

[Close]

BLAST of MELO.jh031613.1 vs. ExPASy Swiss-Prot
Match: Q54UB0 (Transmembrane protein 208 homolog OS=Dictyostelium discoideum OX=44689 GN=tmem208 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-04
Identity = 19/47 (40.43%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGK 48
           M   TY ++GEL+DGG D++ GG+  Y  D+IY+   +Q   ++S K
Sbjct: 68  MCKLTYDNNGELIDGGSDLNQGGMTEYYFDIIYVCCIIQGLGLISDK 114

[Close]

BLAST of MELO.jh031613.1 vs. ExPASy TrEMBL
Match: A0A6J1KBQ8 (transmembrane protein 208 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494021 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.18e-23
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 48
           MA PTYGDDGELLDGGFDMSTGGIC YMHDVIYITSFVQI SILSGKF
Sbjct: 68  MADPTYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKF 115

[Close]

BLAST of MELO.jh031613.1 vs. ExPASy TrEMBL
Match: A0A6J1G433 (transmembrane protein 208 homolog OS=Cucurbita moschata OX=3662 GN=LOC111450556 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.18e-23
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 48
           MA PTYGDDGELLDGGFDMSTGGIC YMHDVIYITSFVQI SILSGKF
Sbjct: 68  MADPTYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKF 115

[Close]

BLAST of MELO.jh031613.1 vs. ExPASy TrEMBL
Match: A0A5D3BBK4 (Transmembrane protein 208-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00150 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.29e-23
Identity = 44/48 (91.67%), Postives = 44/48 (91.67%), Query Frame = 0


Query: 1  MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 48
          MA PTYGDDGELLDGGFDMST GIC YMHDVIYITSFVQI SILSGKF
Sbjct: 1  MAKPTYGDDGELLDGGFDMSTDGICGYMHDVIYITSFVQIMSILSGKF 48

[Close]

BLAST of MELO.jh031613.1 vs. ExPASy TrEMBL
Match: A0A6J5TGQ5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS1616 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.71e-23
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 48
           MATP+YGDDGELLDGGFDM+TGG+C YMHDVIYITSFVQ+ SI+SGKF
Sbjct: 68  MATPSYGDDGELLDGGFDMTTGGVCGYMHDVIYITSFVQVMSIISGKF 115

[Close]

BLAST of MELO.jh031613.1 vs. ExPASy TrEMBL
Match: A0A6P5SPT9 (transmembrane protein 208 homolog OS=Prunus avium OX=42229 GN=LOC110760835 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.71e-23
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 48
           MATP+YGDDGELLDGGFDM+TGG+C YMHDVIYITSFVQ+ SI+SGKF
Sbjct: 68  MATPSYGDDGELLDGGFDMTTGGVCGYMHDVIYITSFVQVMSIISGKF 115

[Close]

BLAST of MELO.jh031613.1 vs. TAIR 10
Match: AT2G23940.1 (Protein of unknown function (DUF788) )

HSP 1 Score: 81.3 bits (199), Expect = 2.4e-16
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 49
           MA P+  DDGEL+DGGFDM+TGGIC Y+HDVIYIT FVQ++SI++GKF
Sbjct: 68  MAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKF 115

[Close]

BLAST of MELO.jh031613.1 vs. TAIR 10
Match: AT4G30500.1 (Protein of unknown function (DUF788) )

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-15
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   MATPTYGDDGELLDGGFDMSTGGICSYMHDVIYITSFVQISSILSGKF 49
           MA P+  D GELLDGGFDMST G+C Y+HDV+YIT FVQ+ SI+SGKF
Sbjct: 68  MAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKF 115

The following BLAST results are available for this feature:

BLAST of MELO.jh031613.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946520.1	2.44e-23	93.75	transmembrane protein 208 homolog [Cucurbita moschata] >XP_022999772.1 transmemb...	[more]
KAA0043099.1	4.73e-23	91.67	transmembrane protein 208-like protein [Cucumis melo var. makuwa] >TYJ96389.1 tr...	[more]
XP_038889500.1	4.88e-23	91.67	transmembrane protein 208 homolog [Benincasa hispida]	[more]
XP_021818858.1	1.39e-22	85.42	transmembrane protein 208 homolog [Prunus avium] >XP_021818859.1 transmembrane p...	[more]
XP_022153357.1	1.39e-22	89.58	transmembrane protein 208 homolog [Momordica charantia]	[more]

BLAST of MELO.jh031613.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NYP0	1.6e-04	44.90	Transmembrane protein 208 OS=Danio rerio OX=7955 GN=tmem208 PE=2 SV=1	[more]
Q54UB0	1.6e-04	40.43	Transmembrane protein 208 homolog OS=Dictyostelium discoideum OX=44689 GN=tmem20...	[more]

BLAST of MELO.jh031613.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBQ8	1.18e-23	93.75	transmembrane protein 208 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494021 PE...	[more]
A0A6J1G433	1.18e-23	93.75	transmembrane protein 208 homolog OS=Cucurbita moschata OX=3662 GN=LOC111450556 ...	[more]
A0A5D3BBK4	2.29e-23	91.67	Transmembrane protein 208-like protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J5TGQ5	6.71e-23	85.42	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS1616 PE=3 SV...	[more]
A0A6P5SPT9	6.71e-23	85.42	transmembrane protein 208 homolog OS=Prunus avium OX=42229 GN=LOC110760835 PE=3 ...	[more]

BLAST of MELO.jh031613.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23940.1	2.4e-16	72.92	Protein of unknown function (DUF788)	[more]
AT4G30500.1	4.5e-15	70.83	Protein of unknown function (DUF788)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008506	SRP-independent targeting protein 2/TMEM208	PFAM	PF05620	TMEM208_SND2	coord: 1..48 e-value: 2.4E-16 score: 60.0
IPR008506	SRP-independent targeting protein 2/TMEM208	PANTHER	PTHR13505	TRANSMEMBRANE PROTEIN 208	coord: 1..48
None	No IPR available	PANTHER	PTHR13505:SF8	BNAA01G06570D PROTEIN	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh031613.1.t1	MELO.jh031613.1.t1	mRNA