MELO.jh031578.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh031578.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr08: 9385027 .. 9386162 (-)
RNA-Seq Expression	MELO.jh031578.1
Synteny	MELO.jh031578.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTGAAGCTGGACTCATGGGACTCTTGCTACGACCAGTCCACCGCTGCTCAAGAGGAGCAGGTGCAGGTATGTTTTCTTTTTCAATAAGTTGCTTCAATTCCTCTATGTATTCAATGTCTTTCATGTTAGGTTTTGCAAGAGTACCGGCTGGAAAGCAAGTCTCAGAGACCCATTGTTGGCCACCACAATCAAAACCCAAGATTTCATCACTCCATCCGACTCTGTATCCTTCTGACTTCCTCCAGAACTCAGCCTCTGCTTGATTCACTTTCATGACATGCTCTTTGTTAAGAGGATCAAGGGCAAGTAGTTTATCGCGCAACTCAGTAAATGAAAATTCATTTATGTCTCTTTCCTCACTAGCACTGCAATCATAAAGCAAGCAATTAGATGAAATAAAAAGCACTGGGAAAACAATGGGGAGGAAAAGTATAAATAGCAAAAAAATTTGAAAAAGGCCTCAAATGACTCTTTGATGAAAAATGAATGTCAACCAAAAGAGAAGGGGGAAAGAAATCAAAAGGAATGAAAAGTGATTTGAGGGGATAAAAATGTCAACTACGTTTCGACCCATTTCCAGCGTCCTAAAATCATATACTCAAACAGAAGCTGGAAGTAACCTGTATTTTTTAAGAGACTCCACGTAGAGATCACGAACATGCTGTATGGCTTCCTCACTTGTATATTTCGGTTTGAATTTCGGAGGGCCTCTCCATTTTGAGATAGGATTGCAAGTTACAACAACAATAGCATCTGTGTAAGGAATATACAGGTATTTCACATGCTTATTGTCAGCCAATAACTTCCTGCATAGAGAGAATATCAGACCTTATATGTGTAATTCTTCAACACTACTTGGGTGACTTGACTTTAGAGGATGAAGACAAAAAAATGAAATGAAATAAAAAAGGTTTCATCCTATTTGTGAGTGACGTGGATGGTAGAGATACAGGATTAAATTTAGTTTAGATCCAAAAGAGAAGCCTTGTTCAAAACTAGACAATTTGAAATTAATAATATAAGTCTACATTAAGCAACAACTCCCAAGAATCAATAGTTTGGATTTCAATCTATATACAACCTTTGTATACTATAACACAATAAATAGTATGGCTTGCAAGTCGAGGGCTTCGA

mRNA sequence

GCTTGAAGCTGGACTCATGGGACTCTTGCTACGACCAGTCCACCGCTGCTCAAGAGGAGCAGGTGCAGGTATGTTTTCTTTTTCAATAAGTTGCTTCAATTCCTCTATGTATTCAATGTCTTTCATGTTAGGTTTTGCAAGAGTACCGGCTGGAAAGCAAGTCTCAGAGACCCATTGTTGGCCACCACAATCAAAACCCAAGATTTCATCACTCCATCCGACTCTGTATCCTTCTGACTTCCTCCAGAACTCAGCCTCTGCTTGATTCACTTTCATGACATGCTCTTTGTTAAGAGGATCAAGGGCAAGTAGTTTATCGCGCAACTCAGTAAATGAAAATTCATTTATGTCTCTTTCCTCACTAGCACTGCAATCATAAAGCAAGCAATTAGATGAAATAAAAAGCACTGGGAAAACAATGGGGAGGAAAAGTATAAATAGCAAAAAAATTTGAAAAAGGCCTCAAATGACTCTTTGATGAAAAATGAATGTCAACCAAAAGAGAAGGGGGAAAGAAATCAAAAGGAATGAAAAGTGATTTGAGGGGATAAAAATGTCAACTACGTTTCGACCCATTTCCAGCGTCCTAAAATCATATACTCAAACAGAAGCTGGAAGTAACCTGTATTTTTTAAGAGACTCCACGTAGAGATCACGAACATGCTGTATGGCTTCCTCACTTGTATATTTCGGTTTGAATTTCGGAGGGCCTCTCCATTTTGAGATAGGATTGCAAGTTACAACAACAATAGCATCTGTGTAAGGAATATACAGGTATTTCACATGCTTATTGTCAGCCAATAACTTCCTGCATAGAGAGAATATCAGACCTTATATGTGTAATTCTTCAACACTACTTGGGTGACTTGACTTTAGAGGATGAAGACAAAAAAATGAAATGAAATAAAAAAGGTTTCATCCTATTTGTGAGTGACGTGGATGGTAGAGATACAGGATTAAATTTAGTTTAGATCCAAAAGAGAAGCCTTGTTCAAAACTAGACAATTTGAAATTAATAATATAAGTCTACATTAAGCAACAACTCCCAAGAATCAATAGTTTGGATTTCAATCTATATACAACCTTTGTATACTATAACACAATAAATAGTATGGCTTGCAAGTCGAGGGCTTCGA

Coding sequence (CDS)

ATGGGACTCTTGCTACGACCAGTCCACCGCTGCTCAAGAGGAGCAGGTGCAGGTATGTTTTCTTTTTCAATAAGTTGCTTCAATTCCTCTATGTATTCAATGTCTTTCATGTTAGGTTTTGCAAGAGTACCGGCTGGAAAGCAAGTCTCAGAGACCCATTGTTGGCCACCACAATCAAAACCCAAGATTTCATCACTCCATCCGACTCTGTATCCTTCTGACTTCCTCCAGAACTCAGCCTCTGCTTGA

Protein sequence

MGLLLRPVHRCSRGAGAGMFSFSISCFNSSMYSMSFMLGFARVPAGKQVSETHCWPPQSKPKISSLHPTLYPSDFLQNSASA

Homology

[Close]

BLAST of MELO.jh031578.1 vs. NCBI nr
Match: PPD88145.1 (hypothetical protein GOBAR_DD14919 [Gossypium barbadense])

HSP 1 Score: 86.7 bits (213), Expect = 2.95e-20
Identity = 49/82 (59.76%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 1  MGLLLRPVHRCSRGAGAGMFSFSISCFNSSMYSMSFMLGFARVPAGKQVSETHCWPPQSK 60
          +GL L+ VHRCS GAGAG+                      RVPAGKQVS+TH  PPQSK
Sbjct: 12 IGLWLQAVHRCSIGAGAGL---------------------ERVPAGKQVSDTHYCPPQSK 71

Query: 61 PKISSLHPTLYPSDFLQNSASA 82
           KISSLHPT YPSDFLQNSASA
Sbjct: 72 HKISSLHPTRYPSDFLQNSASA 72

The following BLAST results are available for this feature:

BLAST of MELO.jh031578.1 vs. NCBI nr


Match Name	E-value	Identity	Description
PPD88145.1	2.95e-20	59.76	hypothetical protein GOBAR_DD14919 [Gossypium barbadense]	[more]

BLAST of MELO.jh031578.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh031578.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh031578.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..26 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh031578.1.t1	MELO.jh031578.1.t1	mRNA