MELO.jh031410.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh031410.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Integrase catalytic domain-containing protein
Location	chr07: 16251776 .. 16252979 (+)
RNA-Seq Expression	MELO.jh031410.1
Synteny	MELO.jh031410.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGAGTTTTTGATCAATTAGTGATCAAGTTGTGAGAAATTTGTGTTCTAACCAGTAGGACGTCGCTGCTGGGAAAGCGTGACCTTGCGGTTAGGACTCGTTGAGCAAATCTCCAGGTAAGAGATTCTACTACTAGCCCTACGAGTAGAATTAAGAGATCGCATACATTCTTGGTTTTGCACATTGATGACTAGACTGCATAACGACATGTGATTTGATGAGGATATGATATGACATAATGATGTGATTTGATGTGATGATATGATATGACATGATGTTGTGGTTTGATATGATAATATGTTTTGACATGAGGATGTGACATGATGACGTGATGATGCTATGTTATGTGTACGCTAAGGTTAGGGTGCATGTTAGCTTAGCCTATTAGAGTCGTACCTGCATGGGTGTCCTTTGAGATCACCACCTATTTAGGACTGCGCAGTCCGACGGGACCGCCAGTCTGGCCTTGATATAGACATGATTCGAGTGATTCGACGGGATCCTCGCAGCCCGATTGTCTTAGTATTTCCTCCGGGTACGCTACAGACCAGTTTGTCCTAGGTGTTCTCTTGGATCACCGAAGACCAGATTTTGTTCCTACGGGAGCACATGTTGCACGTGTTCGGGAATGTGCCAGTTATTCGGTACCATTTTCAGGACTTTAATAGAAAGTTAACAGGCACCTAGCAGGACTAGTAGTGGGTCCCTTACTGAGTATTTTATACTCACTCTTTCCATTTCATATTTTCCAGGTAGGGGCAGAGGTAAGGGCAAGGGCAAGCTAGCGAGCGACCAGAAGTGACCGTGACGAGCCATAGGGATCTCTGCTTCCGCTTTATATCCAAGTTTAGACCTTGAATGTTTGCCTTTTAATTATTCTTTATTTGTTATTTTATTTCTTTAAAATTAGATACTGCCCGAGTTAGGATTTTAATATTTGTTTACATGTCGTAAATTACTTTTGATTAGGTTTTTAAATAATTACATTTTAGAGGTTTTGTTTCGTTTTATCCAAACTTTACGAACTTTATTTGTCTTTTGAAATTTTAACGGCTTCGACTTAGTATATGGAGTTGGGTCGTTACACTCCGCCTCAACGATGCACTTTGGGCATACCGAACGGCCTATAAAACTCCAAATGGCACATCTCCGTTCAAGCTTGTGTACGATAAGCCTTGTCATCTCCCTGTAGAAATATAA

mRNA sequence

ATGTCTGGAGTTTTTGATCAATTAGTGATCAAGTTGTGAGAAATTTGTGTTCTAACCAGTAGGACGTCGCTGCTGGGAAAGCGTGACCTTGCGGACTGCGCAGTCCGACGGGACCGCCAGTCTGGCCTTGATATAGACATGATTCGAGTGATTCGACGGGATCCTCGCAGCCCGATTGTCTTAGTATTTCCTCCGGGTACGCTACAGACCAGTTTGTCCTAGGTGTTCTCTTGGATCACCGAAGACCAGATTTTGTTCCTACGGGAGCACATGTTGCACGTGTTCGGGAATGTGCCAGTTATTCGGTACCATTTTCAGGATATATGGAGTTGGGTCGTTACACTCCGCCTCAACGATGCACTTTGGGCATACCGAACGGCCTATAAAACTCCAAATGGCACATCTCCGTTCAAGCTTGTGTACGATAAGCCTTGTCATCTCCCTGTAGAAATATAA

Coding sequence (CDS)

ATGTTGCACGTGTTCGGGAATGTGCCAGTTATTCGGTACCATTTTCAGGATATATGGAGTTGGGTCGTTACACTCCGCCTCAACGATGCACTTTGGGCATACCGAACGGCCTATAAAACTCCAAATGGCACATCTCCGTTCAAGCTTGTGTACGATAAGCCTTGTCATCTCCCTGTAGAAATATAA

Protein sequence

MLHVFGNVPVIRYHFQDIWSWVVTLRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI

Homology

[Close]

BLAST of MELO.jh031410.1 vs. NCBI nr
Match: XP_026396562.1 (uncharacterized protein LOC113291217, partial [Papaver somniferum])

HSP 1 Score: 76.6 bits (187), Expect = 2.13e-14
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 6   GNVPVIRYHFQDIWSWVVTLRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI 61
           G V V     +  WS    LRLNDALWAYRTAYKTP G SP++LVY KPCHLPVE+
Sbjct: 484 GQVEVSNREIKKDWS----LRLNDALWAYRTAYKTPIGMSPYRLVYGKPCHLPVEL 535

[Close]

BLAST of MELO.jh031410.1 vs. NCBI nr
Match: XP_028965044.1 (uncharacterized protein LOC114827422 [Malus domestica])

HSP 1 Score: 72.8 bits (177), Expect = 2.20e-14
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 24 TLRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI 61
          +LRL+DALWAYRTAYKTP G SPF+LVY KPCHLPVE+
Sbjct: 4  SLRLDDALWAYRTAYKTPVGMSPFRLVYGKPCHLPVEL 41

[Close]

BLAST of MELO.jh031410.1 vs. NCBI nr
Match: XP_008233478.1 (PREDICTED: uncharacterized protein LOC103332517 [Prunus mume])

HSP 1 Score: 74.3 bits (181), Expect = 4.13e-14
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 24  TLRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI 61
           +LRLNDALWAYRTAYKTP G SPF+L+Y KPCHLPVE+
Sbjct: 135 SLRLNDALWAYRTAYKTPIGMSPFRLIYGKPCHLPVEL 172

[Close]

BLAST of MELO.jh031410.1 vs. NCBI nr
Match: XP_021746164.1 (uncharacterized protein LOC110712048 [Chenopodium quinoa])

HSP 1 Score: 72.0 bits (175), Expect = 6.85e-14
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 16 QDIWSWVVTLRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI 61
          ++ WS    LRLNDALWAYRTAYKTP G SP++LV+ KPCHLPVE+
Sbjct: 5  RNDWS----LRLNDALWAYRTAYKTPIGMSPYRLVFGKPCHLPVEL 46

[Close]

BLAST of MELO.jh031410.1 vs. NCBI nr
Match: XP_021827409.1 (uncharacterized protein LOC110768038 [Prunus avium])

HSP 1 Score: 72.8 bits (177), Expect = 7.63e-14
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 24 TLRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI 61
          +LRLNDALWAYRTAYKTP G SPF+L++ KPCHLPVE+
Sbjct: 22 SLRLNDALWAYRTAYKTPIGMSPFRLIFGKPCHLPVEL 59

[Close]

BLAST of MELO.jh031410.1 vs. ExPASy TrEMBL
Match: A0A6P5TJX3 (uncharacterized protein LOC110768038 OS=Prunus avium OX=42229 GN=LOC110768038 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.70e-14
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 24 TLRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI 61
          +LRLNDALWAYRTAYKTP G SPF+L++ KPCHLPVE+
Sbjct: 22 SLRLNDALWAYRTAYKTPIGMSPFRLIFGKPCHLPVEL 59

[Close]

BLAST of MELO.jh031410.1 vs. ExPASy TrEMBL
Match: A0A540KJ73 (Integrase catalytic domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_040222 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.75e-14
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 24  TLRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI 61
           +LRLNDALWAYRTAYKTP G SPF+L+Y KPCHLPVE+
Sbjct: 706 SLRLNDALWAYRTAYKTPIGMSPFRLIYGKPCHLPVEL 743

[Close]

BLAST of MELO.jh031410.1 vs. ExPASy TrEMBL
Match: A0A5N5FB05 (S ribonuclease OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_010530 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.75e-14
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 24  TLRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI 61
           +LRL DALWAYRTAYKTP G SPF+LVY KPCHLPVE+
Sbjct: 66  SLRLEDALWAYRTAYKTPIGMSPFRLVYGKPCHLPVEL 103

[Close]

BLAST of MELO.jh031410.1 vs. ExPASy TrEMBL
Match: A0A6P5SXY4 (uncharacterized protein LOC110763209 OS=Prunus avium OX=42229 GN=LOC110763209 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.19e-13
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 25 LRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI 61
          +RLNDALWAYRTAYKTP G SPF+LVY KPC LPVE+
Sbjct: 1  MRLNDALWAYRTAYKTPIGMSPFRLVYGKPCRLPVEL 37

[Close]

BLAST of MELO.jh031410.1 vs. ExPASy TrEMBL
Match: A0A1U8JW93 (uncharacterized protein LOC107911174 OS=Gossypium hirsutum OX=3635 GN=LOC107911174 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.45e-13
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 24 TLRLNDALWAYRTAYKTPNGTSPFKLVYDKPCHLPVEI 61
          T  L++ALWAYRTAYKTP G SPFKLVY KPCHLPVE+
Sbjct: 10 TTILDEALWAYRTAYKTPLGISPFKLVYGKPCHLPVEL 47

The following BLAST results are available for this feature:

BLAST of MELO.jh031410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_026396562.1	2.13e-14	64.29	uncharacterized protein LOC113291217, partial [Papaver somniferum]	[more]
XP_028965044.1	2.20e-14	81.58	uncharacterized protein LOC114827422 [Malus domestica]	[more]
XP_008233478.1	4.13e-14	81.58	PREDICTED: uncharacterized protein LOC103332517 [Prunus mume]	[more]
XP_021746164.1	6.85e-14	69.57	uncharacterized protein LOC110712048 [Chenopodium quinoa]	[more]
XP_021827409.1	7.63e-14	78.95	uncharacterized protein LOC110768038 [Prunus avium]	[more]

BLAST of MELO.jh031410.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh031410.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P5TJX3	3.70e-14	78.95	uncharacterized protein LOC110768038 OS=Prunus avium OX=42229 GN=LOC110768038 PE...	[more]
A0A540KJ73	6.75e-14	81.58	Integrase catalytic domain-containing protein OS=Malus baccata OX=106549 GN=C1H4...	[more]
A0A5N5FB05	9.75e-14	81.58	S ribonuclease OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_010530 ...	[more]
A0A6P5SXY4	1.19e-13	81.08	uncharacterized protein LOC110763209 OS=Prunus avium OX=42229 GN=LOC110763209 PE...	[more]
A0A1U8JW93	1.45e-13	78.95	uncharacterized protein LOC107911174 OS=Gossypium hirsutum OX=3635 GN=LOC1079111...	[more]

BLAST of MELO.jh031410.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 10..61 e-value: 1.9E-5 score: 26.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh031410.1.t1	MELO.jh031410.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding