MELO.jh031253.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh031253.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Flocculation protein FLO11-like
Location	chr06: 28628321 .. 28629598 (-)
RNA-Seq Expression	MELO.jh031253.1
Synteny	MELO.jh031253.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTGATGGAATATCATTCCATTCTAAGGAATGTTTCTTCAAGTGGAAGTATGTCATCCAGCATCGGTTAGCAGGTGAGTCCATGATTTTCGGTCAACACCGCTCTTTCGCTGTGGTTATTGATTTGATCAGCAAGGAAGGGATGACGCGCACAGTGATAAACCTATGTGTGTTTTACTCGAAGCTGGTTCAAGAGTTCATGATTAATCGTCCTGCCGATTTTAATTAACTAGTTAACCCCAATTTTCGAAAAGTACATGTGAGGGGTAAATGTGCAGATGTGCCTCCTGCTCTGTTAAACTCCTATTTAAATGTGTCCATGCCCGTTGGATATGCTACTTGCTCACTTCTGAACAACTTGCCCTGGAACACTTTGGTAGATGGTTCAAACTTGGCCTACAGATGGTCAATTTTCTACAATCAAGCTAACTGTGAAATATGCGATTCTTCACAAGATTGGAATAGCTAACTTGCTTCCGTCAAAACACATGGCTATCATCTCGATTGCTCTCGCCCAACTCATATATGAGATTAGTACTGCGACTTTCGTAGATGTGGGCGAGTTAATCTTTCAACAAATTCTCTCCCATGTTGACACTTATAGCATCAACATCCCGTTATGCTTTTCTTGGTTGATCACTAGGTTCCTTCTAGCTTAGCATCTAAAGGTTATAATTAATGTTGAGATGGCGGGTCCTGCTCCAAAAATGCTTGCTTTCAGTTATAAATTGTGTTTAGGGATTATATGCCTCTAATATTTCGGCTACATTTTAGCCACCTTGACAAGGTTTTAGTTCATCTGGTGCTAATTTATCAATTTCGGCTGCTGGTCAGCATCTGTCCTAAGAGTTAGCTATGAGAGTAGTGCAGGTTCTGTTAGAGGAATCGCGATCACTTAGTGTGTCTCTTAAGGACATTCAGAAGGTTGTTACTACTTTGACTGGAAGACGTACTGTTGTGGAGTCTGTTCTTATTGCTCTATGGGCTCATATAGTTGCCTCTCAGGAACCCTTGGATCCTTGAGTTTTATTTGTTCACATGCAAGGCAGAGTACAGTGGGAAGAGAGTAGAAATTGGAAGATGATATTTTATTGTCTTGTTTGTTGCCTGACTATATGATTTTTTTTTTCTTCTGCTAGATGTTGGATATTTTGTGTGGTTGCCTTCTAATGATTTTTTTTTGTTATCGTTGTGGATTGTATGTGTGCTCCCCTGTTATTGAAAAGTTCTTTTTGTTAAAGAATGAAATGAGAACATGGTTGGCATGGCTCTTGTCTA

mRNA sequence

GATTGATGGAATATCATTCCATTCTAAGGAATGTTTCTTCAAGTGGAAGTATGTCATCCAGCATCGGTTAGCAGGTGAGTCCATGATTTTCGGTCAACACCGCTCTTTCGCTGTGGTTATTGATTTGATCAGCAAGGAAGGGATGACGCGCACAGTGATAAACCTATGTGTGTTTTACTCGAAGCTGGTTCAAGAGTTCATGATTAATCGTCCTGCCGATTTTAATTAACTAGTTAACCCCAATTTTCGAAAAGTACATGTGAGGGGTAAATGTGCAGATGTGCCTCCTGCTCTGTTAAACTCCTATTTAAATGTGTCCATGCCCGTTGGATATGCTACTTGCTCACTTCTGAACAACTTGCCCTGGAACACTTTGGTAGATGGTTCAAACTTGGCCTACAGATGGTCAATTTTCTACAATCAAGCTAACTGTGAAATATGCGATTCTTCACAAGATTGGAATAGCTAACTTGCTTCCGTCAAAACACATGGCTATCATCTCGATTGCTCTCGCCCAACTCATATATGAGATTAGTACTGCGACTTTCGTAGATGTGGGCGAGTTAATCTTTCAACAAATTCTCTCCCATGTTGACACTTATAGCATCAACATCCCGTTATGCTTTTCTTGGTTGATCACTAGGTTCCTTCTAGCTTAGCATCTAAAGGTTATAATTAATGTTGAGATGGCGGGTCCTGCTCCAAAAATGCTTGCTTTCAGTTATAAATTGTGTTTAGGGATTATATGCCTCTAATATTTCGGCTACATTTTAGCCACCTTGACAAGGTTTTAGTTCATCTGGTGCTAATTTATCAATTTCGGCTGCTGGTCAGCATCTGTCCTAAGAGTTAGCTATGAGAGTAGTGCAGGTTCTGTTAGAGGAATCGCGATCACTTAGTGTGTCTCTTAAGGACATTCAGAAGGTTGTTACTACTTTGACTGGAAGACGTACTGTTGTGGAGTCTGTTCTTATTGCTCTATGGGCTCATATAGTTGCCTCTCAGGAACCCTTGGATCCTTGAGTTTTATTTGTTCACATGCAAGGCAGAGTACAGTGGGAAGAGAGTAGAAATTGGAAGATGATATTTTATTGTCTTGTTTGTTGCCTGACTATATGATTTTTTTTTTCTTCTGCTAGATGTTGGATATTTTGTGTGGTTGCCTTCTAATGATTTTTTTTTGTTATCGTTGTGGATTGTATGTGTGCTCCCCTGTTATTGAAAAGTTCTTTTTGTTAAAGAATGAAATGAGAACATGGTTGGCATGGCTCTTGTCTA

Coding sequence (CDS)

ATGGTTCAAACTTGGCCTACAGATGGTCAATTTTCTACAATCAAGCTAACTGTGAAATATGCGATTCTTCACAAGATTGGAATAGCTAACTTGCTTCCGTCAAAACACATGGCTATCATCTCGATTGCTCTCGCCCAACTCATATATGAGATTAGTACTGCGACTTTCGTAGATGTGGGCGAGTTAATCTTTCAACAAATTCTCTCCCATGTTGACACTTATAGCATCAACATCCCGTTATGCTTTTCTTGGTTGATCACTAGGTTCCTTCTAGCTTAG

Protein sequence

MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVGELIFQQILSHVDTYSINIPLCFSWLITRFLLA

Homology

[Close]

BLAST of MELO.jh031253.1 vs. NCBI nr
Match: KAA0046945.1 (uncharacterized protein E6C27_scaffold230G001190 [Cucumis melo var. makuwa] >TYK03207.1 uncharacterized protein E5676_scaffold298G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (438), Expect = 4.18e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG 60
           MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG
Sbjct: 271 MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG 330

Query: 61  ELIFQQILSHVDTYSINIPLCFSWLITR 88
           ELIFQQILSHVDTYSINIPLCFSWLITR
Sbjct: 331 ELIFQQILSHVDTYSINIPLCFSWLITR 358

[Close]

BLAST of MELO.jh031253.1 vs. NCBI nr
Match: KAA0067166.1 (envelope-like protein [Cucumis melo var. makuwa] >TYK26015.1 envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (281), Expect = 1.60e-28
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1   MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG 60
           +V+ W TD +FS  KL+VKYAILHKIGI N   S H A IS ALAQLIY+I ++  VDVG
Sbjct: 14  LVRNWLTDDKFSISKLSVKYAILHKIGIGNWYMSTHRATISTALAQLIYQIDSSHVVDVG 73

Query: 61  ELIFQQILSHVDTYSINIPLCFSWLITRFLLA 92
           E +FQQIL HVDTY INIP+CF  LI  FLL+
Sbjct: 74  EFVFQQILRHVDTYGINIPICFPRLINDFLLS 105

[Close]

BLAST of MELO.jh031253.1 vs. NCBI nr
Match: KAA0063339.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK28039.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 6.07e-27
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 1   MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG 60
           +V+TWPTDGQF   KL++KYAIL+ IG+ N  PS H+A I  ALAQL+Y IST   VDVG
Sbjct: 232 LVRTWPTDGQFFVTKLSMKYAILYNIGVVNGYPSTHLATIFTALAQLVYLISTGKPVDVG 291

Query: 61  ELIFQQILSHVDTYSINIPLCFSWLITRFLL 91
           E IFQQI+ HVDTY INI +CF  LIT FLL
Sbjct: 292 EFIFQQIVRHVDTYGINILICFPQLITGFLL 322

[Close]

BLAST of MELO.jh031253.1 vs. NCBI nr
Match: KAA0036753.1 (hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820.1 hypothetical protein E5676_scaffold110G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 5.95e-22
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 2   VQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVGE 61
           V++W T+GQ     L++KYAILHKIGI N +PS   +I+S AL   IY + T   ++VGE
Sbjct: 865 VKSWLTEGQLPIASLSMKYAILHKIGITNWIPSTRASIVSAALGHFIYLVGTGARLNVGE 924

Query: 62  LIFQQILSHVDTYSINIPLCFSWLITRFLLA 92
            IF+ +L HVDT+ INIP+CF WL+  FLL+
Sbjct: 925 FIFRHLLRHVDTFGINIPICFPWLLFAFLLS 955

[Close]

BLAST of MELO.jh031253.1 vs. NCBI nr
Match: KAA0049582.1 (uncharacterized protein E6C27_scaffold163G00250 [Cucumis melo var. makuwa] >TYK15942.1 uncharacterized protein E5676_scaffold94G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 1.93e-21
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 1   MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG 60
           +V  WP DGQ     LTVKY+ILH+I I+N +PS H + I  +L   IY + T   V+VG
Sbjct: 67  IVPVWPVDGQLPVTSLTVKYSILHRIRISNWIPSTHASTILTSLGHFIYLVGTGVKVNVG 126

Query: 61  ELIFQQILSHVDTYSINIPLCFSWLITRFLLA 92
           E IF  +L HVDT+SI+IP+CF  +++ FLLA
Sbjct: 127 EFIFNHLLRHVDTFSIHIPICFPRILSGFLLA 158

[Close]

BLAST of MELO.jh031253.1 vs. ExPASy TrEMBL
Match: A0A5A7TZX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00150 PE=4 SV=1)

HSP 1 Score: 173 bits (438), Expect = 2.02e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG 60
           MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG
Sbjct: 271 MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG 330

Query: 61  ELIFQQILSHVDTYSINIPLCFSWLITR 88
           ELIFQQILSHVDTYSINIPLCFSWLITR
Sbjct: 331 ELIFQQILSHVDTYSINIPLCFSWLITR 358

[Close]

BLAST of MELO.jh031253.1 vs. ExPASy TrEMBL
Match: A0A5A7VL39 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00200 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 7.72e-29
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1   MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG 60
           +V+ W TD +FS  KL+VKYAILHKIGI N   S H A IS ALAQLIY+I ++  VDVG
Sbjct: 14  LVRNWLTDDKFSISKLSVKYAILHKIGIGNWYMSTHRATISTALAQLIYQIDSSHVVDVG 73

Query: 61  ELIFQQILSHVDTYSINIPLCFSWLITRFLLA 92
           E +FQQIL HVDTY INIP+CF  LI  FLL+
Sbjct: 74  EFVFQQILRHVDTYGINIPICFPRLINDFLLS 105

[Close]

BLAST of MELO.jh031253.1 vs. ExPASy TrEMBL
Match: A0A5D3DX78 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002900 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 2.94e-27
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 1   MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG 60
           +V+TWPTDGQF   KL++KYAIL+ IG+ N  PS H+A I  ALAQL+Y IST   VDVG
Sbjct: 232 LVRTWPTDGQFFVTKLSMKYAILYNIGVVNGYPSTHLATIFTALAQLVYLISTGKPVDVG 291

Query: 61  ELIFQQILSHVDTYSINIPLCFSWLITRFLL 91
           E IFQQI+ HVDTY INI +CF  LIT FLL
Sbjct: 292 EFIFQQIVRHVDTYGINILICFPQLITGFLL 322

[Close]

BLAST of MELO.jh031253.1 vs. ExPASy TrEMBL
Match: A0A5D3B744 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001050 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.88e-22
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 2   VQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVGE 61
           V++W T+GQ     L++KYAILHKIGI N +PS   +I+S AL   IY + T   ++VGE
Sbjct: 865 VKSWLTEGQLPIASLSMKYAILHKIGITNWIPSTRASIVSAALGHFIYLVGTGARLNVGE 924

Query: 62  LIFQQILSHVDTYSINIPLCFSWLITRFLLA 92
            IF+ +L HVDT+ INIP+CF WL+  FLL+
Sbjct: 925 FIFRHLLRHVDTFGINIPICFPWLLFAFLLS 955

[Close]

BLAST of MELO.jh031253.1 vs. ExPASy TrEMBL
Match: A0A5A7U1E0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00560 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.33e-22
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 1   MVQTWPTDGQFSTIKLTVKYAILHKIGIANLLPSKHMAIISIALAQLIYEISTATFVDVG 60
           +V  WP DGQ     LTVKY+ILH+I I+N +PS H + I  +L   IY + T   V+VG
Sbjct: 67  IVPVWPVDGQLPVTSLTVKYSILHRIRISNWIPSTHASTILTSLGHFIYLVGTGVKVNVG 126

Query: 61  ELIFQQILSHVDTYSINIPLCFSWLITRFLLA 92
           E IF  +L HVDT+SI+IP+CF  +++ FLLA
Sbjct: 127 EFIFNHLLRHVDTFSIHIPICFPRILSGFLLA 158

The following BLAST results are available for this feature:

BLAST of MELO.jh031253.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046945.1	4.18e-50	100.00	uncharacterized protein E6C27_scaffold230G001190 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0067166.1	1.60e-28	64.13	envelope-like protein [Cucumis melo var. makuwa] >TYK26015.1 envelope-like prote...	[more]
KAA0063339.1	6.07e-27	64.84	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK28039.1 gag-pol polyprotein [...	[more]
KAA0036753.1	5.95e-22	51.65	hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa] >TYJ95820...	[more]
KAA0049582.1	1.93e-21	50.00	uncharacterized protein E6C27_scaffold163G00250 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of MELO.jh031253.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh031253.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZX3	2.02e-50	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VL39	7.72e-29	64.13	Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15...	[more]
A0A5D3DX78	2.94e-27	64.84	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G...	[more]
A0A5D3B744	2.88e-22	51.65	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7U1E0	9.33e-22	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO.jh031253.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh031253.1.t1	MELO.jh031253.1.t1	mRNA