MELO.jh031125.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh031125.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionNipped-B-like protein isoform X3
Locationchr06: 6493745 .. 6496830 (+)
RNA-Seq ExpressionMELO.jh031125.1
SyntenyMELO.jh031125.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATCACTCTCTAATCTCCCCTTGGCTTCCAGTCAAAACCTTCATATTCCCCACCTTCACCATCGCCGCCGTGAAATCCGCCTTCCAGAGGCTCCGACTACTTCGATACTGTCTCATCGTCGCTGCCGTCAATGGGTCATCTTCCATCGCACTTAGGTAACATTTTTACTACTACTATTATCGTAACAAACACCCCTTATTTTTCTTATTTTTATGCATCTAAAACTACATTCATTTTCTTGTTGTCTAACTTCAAACAAGTAGCAAAAATGATGGAAGAGTCAAGATGCACAAATTAATTTTCTTTTAGTAATACTCGAGTAAATCCTCACTGCACATTCCCTTCGATCTCATGAAGAGAAAAAATATATATAAATAAACATTATTTTTTGGTAAATTATTCAAAGTTAAACTCTCACCCATTTGAGTGTTGAGGAAATCCGTACGATATTAAATCCGAGGCAGTACGTGGTGCATTTGGATTTGGAAGCTCCGGCAGCTGAGCGGCTGGAATTAGCTGATTTTGTGAACAATGAACCGATTTTTAGGAGTGTGGGTAATGTGAGGATGATATTGCGGGCGAATTTGGTTACTTATAGAGGGCCAACGATGGTTACTAATACACTTCACGCGGCGGCGATTCTGTTGAAGGACGGTGGAGATTGGGACTGGTTTATTAATCTCAGTGCTTCTGATTATCCTCTGGTCACTCAAGATGGTATTTGTCAACTGTTTAGTATAATTTCAAAACTCTGGGATTCAATTCTAGCACGTTGGTTCGTTTTATATGTTATTTTAGACTTCTTCTTTATTGTTTATATCTCGATCTTCTCTTGATATTCTAATTGTTGTTAGTTGTGGTAGCTGGAATTTGATCATTGTTTTCTTCTCTGAATGAGTTGGAATTTGGGTATTTGTCATGTTCTGTTTTTGGATTAGTTGCTTTCCAACCTTTTCTTTCTGGTTCCGTTCTTCATATTCTAAGTTTTTTAGCTGACTTGCCATTTTGATCAATCTACACTTGTATGGAGTATAGGATTTGAAGGTTATTGGGCAAATTGTTTCTTATCCAAAAAAAGAAAAAAGGGCTCTTGAGGATGCTCTGTTATGGTTTTAACTTTTAATACGCATGAAATTCATCAGTCTGGATTTGTGTTTGAGTCGAGGTCTAGATACTGGTTCTGTGTAACCTTTTGTTTTGTTTATGATATTTGTAAAATTTTATTTAATATTGATGGATGGTTTGAATTTATACGTCAAATATGGATTAACTTCAAGTTGACTTTGACTTGTAAACTCTAATCCATGCGTCATAGTATTTGCTTTTTCAATGTAGAAAATTATGCATTTGAATGAATTGGCCTAAACTGCACTTTTATTTCTTCAACATATTAGCTGTCTGTTTCTCTTTTTGGTATCTGCCTTTCTCCTTTCTTGTTGTGTGAAAGTTTTATTGCAGTTGGTCTTCGTCTTTTCTATAAGTGGATCTGTAATTGATGTGTGAAATCTTCTTAGTTCCTTCATAGTTATCCCTATGGACACTTTAAACTTAAAGATTTAAGAACCATTGAAGATAGTTCAAAGACGGAAAAGAAAAAGATCATTAAATACAAAGTTGGACATATTTGCTTCTCCTGTTTTCCTTCTTGTTTTCATCAGTTCGAACTTCGAACTTCGAAGAAGAATGGAGTTGGACTAGGCTCTTGAATTTCCTTTTTCCTTTTTTTTTTCTTTTCCATTTCTTTTAGCAAATTGGACGGGTCCTACTTCTTGCATTATGTTCATGGCCCACCCTAACTATTACAATTGGTTAGGTCCTACTTTTTCCTTTTTTTTTTCTTTTCCATTTCTTTTAGCAAGTTGGACTACTTTTACAATTGGTTTTCTGATGCAATTTTTTGTGTACTCTTCTTTTATACCACAGATCTGCTTCATACTCTGATACCCATTCCAAGAAATCTGAACTTCATTGAGCATACGAGTGACATTGGATGGAAGGAGTATGCACTCTTTCATTGACATAGATTTTACGTTTTTGTCGATCAAGTAGTTTGAGTTCTTAGTTGTTAACAAATTTTTTTCCCTTAAATAACTTTCCATGTTTGAAAAATAAGATTGTTGACAAATAACTTGTTTATTTTGTTTTCTAGTTTTTCAAAAAACAAAATTTTCAAGTACTACAATTTTTTAGTTTTTGGTTGGAAAGCAACCATACATCTTAAATATTGAGACTGGTAAGATAATTATTATCAAATGAACCTCAAGGTTTTGTTAATTTTTATATTGAGCTGCACAGAGTTGTAATGTCAAATCTTTTGATTTTTCAGTTGTATTGGGAAAGGATTCTGGGACGAAGCTTAGATTTAAATGGCCAAGTTCGTCAAATTGCCCTCAAGGTAAAAAGTTCTGGATTATGATTCTACTAGAAAGCTGTCTGTGACAACCATCTTAACCTGGACGACTTTTTTGTGGATACTTTAATGTGAATGTATTTCCAGGCCATAGTAAGCTTGTGGGTTGGTGCTGTGATTAGTAGCTGGTGCAATTTCATAACTGTCTTGTATGTTGGTAAGTGTTTATAGATTTTGCTTCTCAAAACATTTACATCTTTAATTTCTTTGATGATATCATTTACCTATAACCACTAAAGAGATTTAGAGTGTTTTTGGTTGATTTAGATATTTGATATCATTTAGATATTTGTACAATAGTGTTCTTTGAGCGTTCCGATATTATATGTAGATAACAATTGTTTTTGTCGTGCTTGATTGAATGTAGATAACTGTATATTTTTCCAGGTCATTTTCTACTAGAGGAGGATGATAAGTTTCTAGATAAGGTTTGAGCTACAGTTCAGGAAGAGGAATGTCAAGCCCTTGCTGCATTTGGTGCCTGTTTCCAATATTAATAATTGTTTGAAGAAGCATTTTCGAGACCTTTAAAATGTCGTGATCTTTGAATTTATATAATTCTGTTTGGTTGCAGTTAATTTTACAAGCGTGTTTTCATTGTTGGTGGAATCAGACTTGAATAATATGGGATTTATGTGCTTTAAGATATGAATGGGATTTATTGTTGCTTTAAGA

mRNA sequence

TCATCACTCTCTAATCTCCCCTTGGCTTCCAGTCAAAACCTTCATATTCCCCACCTTCACCATCGCCGCCGTGAAATCCGCCTTCCAGAGGCTCCGACTACTTCGATACTGTCTCATCGTCGCTGCCGTCAATGGGTCATCTTCCATCGCACTTAGATCTGCTTCATACTCTGATACCCATTCCAAGAAATCTGAACTTCATTGAGCATACGAGTGACATTGGATGGAAGGATTGTATTGGGAAAGGATTCTGGGACGAAGCTTAGATTTAAATGGCCAAGTTCGTCAAATTGCCCTCAAGGCCATAGTAAGCTTGTGGGTTGGTGCTGTGATTAGTAGCTGGTGCAATTTCATAACTGTCTTGTATGTTGGTCATTTTCTACTAGAGGAGGATGATAAGTTTCTAGATAAGGTTTGAGCTACAGTTCAGGAAGAGGAATGTCAAGCCCTTGCTGCATTTGGTGCCTGTTTCCAATATTAATAATTGTTTGAAGAAGCATTTTCGAGACCTTTAAAATGTCGTGATCTTTGAATTTATATAATTCTGTTTGGTTGCAGTTAATTTTACAAGCGTGTTTTCATTGTTGGTGGAATCAGACTTGAATAATATGGGATTTATGTGCTTTAAGATATGAATGGGATTTATTGTTGCTTTAAGA

Coding sequence (CDS)

ATGGAAGGATTGTATTGGGAAAGGATTCTGGGACGAAGCTTAGATTTAAATGGCCAAGTTCGTCAAATTGCCCTCAAGGCCATAGTAAGCTTGTGGGTTGGTGCTGTGATTAGTAGCTGGTGCAATTTCATAACTGTCTTGTATGTTGGTCATTTTCTACTAGAGGAGGATGATAAGTTTCTAGATAAGGTTTGA

Protein sequence

MEGLYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDKV
Homology
[Close]
BLAST of MELO.jh031125.1 vs. NCBI nr
Match: KAA0032422.1 (nipped-B-like protein isoform X3 [Cucumis melo var. makuwa] >TYK05630.1 nipped-B-like protein isoform X3 [Cucumis melo var. makuwa] >TYK19225.1 nipped-B-like protein isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 7.31e-37
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 4  LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 63
          LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK
Sbjct: 39 LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 98

[Close]
BLAST of MELO.jh031125.1 vs. NCBI nr
Match: KAA0038966.1 (nipped-B-like protein isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 7.76e-37
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 4   LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 63
           LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK
Sbjct: 41  LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 100

[Close]
BLAST of MELO.jh031125.1 vs. NCBI nr
Match: KAA0065067.1 (nipped-B-like protein isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (318), Expect = 2.75e-34
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 4   LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 63
           LYWERILGRSLDLNGQVRQ+ALKAIVSLWVGAVISSWCNFITVLYVGHFLLE+DDKFLDK
Sbjct: 202 LYWERILGRSLDLNGQVRQVALKAIVSLWVGAVISSWCNFITVLYVGHFLLEDDDKFLDK 261

[Close]
BLAST of MELO.jh031125.1 vs. NCBI nr
Match: KAA0058102.1 (nipped-B-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 1.44e-33
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 4   LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 63
           LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK
Sbjct: 358 LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 417

[Close]
BLAST of MELO.jh031125.1 vs. NCBI nr
Match: KAA0039563.1 (protein transport protein SFT2-like [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (311), Expect = 3.19e-32
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 4   LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 63
           LYWERILGRSLDLNGQV QIALKAIVSLWVGAVISSWCNFI VLYVGHFLLEEDDKFLDK
Sbjct: 319 LYWERILGRSLDLNGQVHQIALKAIVSLWVGAVISSWCNFIIVLYVGHFLLEEDDKFLDK 378

[Close]
BLAST of MELO.jh031125.1 vs. ExPASy TrEMBL
Match: A0A5A7SMZ0 (Nipped-B-like protein isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00220 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 3.54e-37
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 4  LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 63
          LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK
Sbjct: 39 LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 98

[Close]
BLAST of MELO.jh031125.1 vs. ExPASy TrEMBL
Match: A0A5A7TAA2 (Nipped-B-like protein isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00440 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 3.76e-37
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 4   LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 63
           LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK
Sbjct: 41  LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 100

[Close]
BLAST of MELO.jh031125.1 vs. ExPASy TrEMBL
Match: A0A5A7VDE2 (Nipped-B-like protein isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003970 PE=4 SV=1)

HSP 1 Score: 127 bits (318), Expect = 1.33e-34
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 4   LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 63
           LYWERILGRSLDLNGQVRQ+ALKAIVSLWVGAVISSWCNFITVLYVGHFLLE+DDKFLDK
Sbjct: 202 LYWERILGRSLDLNGQVRQVALKAIVSLWVGAVISSWCNFITVLYVGHFLLEDDDKFLDK 261

[Close]
BLAST of MELO.jh031125.1 vs. ExPASy TrEMBL
Match: A0A5A7UQF8 (Nipped-B-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004100 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 6.99e-34
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 4   LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 63
           LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK
Sbjct: 358 LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 417

[Close]
BLAST of MELO.jh031125.1 vs. ExPASy TrEMBL
Match: A0A5A7T9C1 (Vesicle transport protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00330 PE=3 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.55e-32
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0 

Query: 4   LYWERILGRSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVGHFLLEEDDKFLDK 63
           LYWERILGRSLDLNGQV QIALKAIVSLWVGAVISSWCNFI VLYVGHFLLEEDDKFLDK
Sbjct: 319 LYWERILGRSLDLNGQVHQIALKAIVSLWVGAVISSWCNFIIVLYVGHFLLEEDDKFLDK 378

[Close]
BLAST of MELO.jh031125.1 vs. TAIR 10
Match: AT3G10260.1 (Reticulon family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.1e-04
Identity = 18/39 (46.15%), Postives = 27/39 (69.23%), Query Frame = 0 

Query: 12  RSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVG 51
           + L   G ++Q  L A++ LWV A++ S CNF+TVLY+G
Sbjct: 155 QDLACKGNLKQF-LMAVIGLWVAAMVGSCCNFLTVLYIG 192

[Close]
BLAST of MELO.jh031125.1 vs. TAIR 10
Match: AT3G10260.2 (Reticulon family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.1e-04
Identity = 18/39 (46.15%), Postives = 27/39 (69.23%), Query Frame = 0 

Query: 12  RSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVG 51
           + L   G ++Q  L A++ LWV A++ S CNF+TVLY+G
Sbjct: 155 QDLACKGNLKQF-LMAVIGLWVAAMVGSCCNFLTVLYIG 192

[Close]
BLAST of MELO.jh031125.1 vs. TAIR 10
Match: AT3G10260.3 (Reticulon family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.1e-04
Identity = 18/39 (46.15%), Postives = 27/39 (69.23%), Query Frame = 0 

Query: 12  RSLDLNGQVRQIALKAIVSLWVGAVISSWCNFITVLYVG 51
           + L   G ++Q  L A++ LWV A++ S CNF+TVLY+G
Sbjct: 175 QDLACKGNLKQF-LMAVIGLWVAAMVGSCCNFLTVLYIG 212

The following BLAST results are available for this feature:
BLAST of MELO.jh031125.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032422.17.31e-37100.00nipped-B-like protein isoform X3 [Cucumis melo var. makuwa] >TYK05630.1 nipped-B... [more]
KAA0038966.17.76e-37100.00nipped-B-like protein isoform X3 [Cucumis melo var. makuwa][more]
KAA0065067.12.75e-3496.72nipped-B-like protein isoform X3 [Cucumis melo var. makuwa][more]
KAA0058102.11.44e-33100.00nipped-B-like protein isoform X1 [Cucumis melo var. makuwa][more]
KAA0039563.13.19e-3296.72protein transport protein SFT2-like [Cucumis melo var. makuwa][more]
BLAST of MELO.jh031125.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh031125.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SMZ03.54e-37100.00Nipped-B-like protein isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7TAA23.76e-37100.00Nipped-B-like protein isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5A7VDE21.33e-3496.72Nipped-B-like protein isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5A7UQF86.99e-34100.00Nipped-B-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5A7T9C11.55e-3296.72Vesicle transport protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
BLAST of MELO.jh031125.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G10260.12.1e-0446.15Reticulon family protein [more]
AT3G10260.22.1e-0446.15Reticulon family protein [more]
AT3G10260.32.1e-0446.15Reticulon family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh031125.1.t1MELO.jh031125.1.t1mRNA