MELO.jh031004.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh031004.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionNAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
Locationchr05: 22194884 .. 22195033 (-)
RNA-Seq ExpressionMELO.jh031004.1
SyntenyMELO.jh031004.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATAACAGAGTTTCTGCTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGTTAATGATTTCATAACTATCTTTGTAGATCCATAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGAT

mRNA sequence

ATGGCTATAACAGAGTTTCTGCTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGTTAATGATTTCATAACTATCTTTGTAGATCCATAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGAT

Coding sequence (CDS)

ATGGCTATAACAGAGTTTCTGCTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGTTAATGATTTCATAACTATCTTTGTAGATCCATAA

Protein sequence

MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP
Homology
[Close]
BLAST of MELO.jh031004.1 vs. NCBI nr
Match: QUV74413.1 (NADH-plastoquinone oxidoreductase subunit 5 [Phragmipedium besseae] >QUV74422.1 NADH-plastoquinone oxidoreductase subunit 5 [Phragmipedium besseae])

HSP 1 Score: 59.7 bits (143), Expect = 1.95e-10
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 33
          MAITEFLLFVLTATLGGMFLCG ND ITIFV P
Sbjct: 1  MAITEFLLFVLTATLGGMFLCGANDLITIFVAP 33

[Close]
BLAST of MELO.jh031004.1 vs. NCBI nr
Match: KAF9613623.1 (hypothetical protein IFM89_009449 [Coptis chinensis])

HSP 1 Score: 61.2 bits (147), Expect = 2.14e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1  MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 33
          MAITEFLLFVLTATLGGMFLCGVND ITIFV P
Sbjct: 1  MAITEFLLFVLTATLGGMFLCGVNDLITIFVAP 33

[Close]
BLAST of MELO.jh031004.1 vs. NCBI nr
Match: VFQ83862.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 61.6 bits (148), Expect = 3.08e-10
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1  MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 33
          MAITEFLLF+LTATLGGMFLCG NDFITIFV P
Sbjct: 1  MAITEFLLFILTATLGGMFLCGANDFITIFVAP 33

[Close]
BLAST of MELO.jh031004.1 vs. NCBI nr
Match: CAB41473.1 (ndhB, partial [Solanum nigrum])

HSP 1 Score: 59.7 bits (143), Expect = 5.61e-10
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 33
          MAITEFLLFVLTATLGGMFLCG ND ITIFV P
Sbjct: 1  MAITEFLLFVLTATLGGMFLCGANDLITIFVAP 33

[Close]
BLAST of MELO.jh031004.1 vs. NCBI nr
Match: YP_009495371.1 (NADH-plastoquinone oxidoreductase subunit 2 [Gentiana veitchiorum] >YP_009495380.1 NADH-plastoquinone oxidoreductase subunit 2 [Gentiana veitchiorum] >AWO67203.1 NADH-plastoquinone oxidoreductase subunit 2 [Gentiana veitchiorum] >AWO67212.1 NADH-plastoquinone oxidoreductase subunit 2 [Gentiana veitchiorum])

HSP 1 Score: 60.8 bits (146), Expect = 5.79e-10
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1   MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 33
           M+ITEFLLF+LTATLGGMFLCG NDFITIFV P
Sbjct: 124 MSITEFLLFILTATLGGMFLCGANDFITIFVTP 156

[Close]
BLAST of MELO.jh031004.1 vs. ExPASy Swiss-Prot
Match: P0CC48 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica OX=13443 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.5e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1   MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 34
           MAITEFLLFVLTATLGGMFLCG NDFITIFV P
Sbjct: 124 MAITEFLLFVLTATLGGMFLCGANDFITIFVAP 156

[Close]
BLAST of MELO.jh031004.1 vs. ExPASy Swiss-Prot
Match: P0CC76 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Ipomoea purpurea OX=4121 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.5e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1   MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 34
           MAITEFLLFVLTATLGGMFLCG NDFITIFV P
Sbjct: 124 MAITEFLLFVLTATLGGMFLCGANDFITIFVAP 156

[Close]
BLAST of MELO.jh031004.1 vs. ExPASy Swiss-Prot
Match: P0CC49 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Coffea arabica OX=13443 GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.5e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1   MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 34
           MAITEFLLFVLTATLGGMFLCG NDFITIFV P
Sbjct: 124 MAITEFLLFVLTATLGGMFLCGANDFITIFVAP 156

[Close]
BLAST of MELO.jh031004.1 vs. ExPASy Swiss-Prot
Match: P0CC77 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Ipomoea purpurea OX=4121 GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.5e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1   MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 34
           MAITEFLLFVLTATLGGMFLCG NDFITIFV P
Sbjct: 124 MAITEFLLFVLTATLGGMFLCGANDFITIFVAP 156

[Close]
BLAST of MELO.jh031004.1 vs. ExPASy Swiss-Prot
Match: Q67IE2 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Phormium tenax OX=51475 GN=ndhB PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 8.5e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1   MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 34
           MAITEFLLFVLTATLGGMFLCG NDFITIFV P
Sbjct: 124 MAITEFLLFVLTATLGGMFLCGANDFITIFVAP 156

[Close]
BLAST of MELO.jh031004.1 vs. ExPASy TrEMBL
Match: A0A484M4U6 (Proton_antipo_M domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS25638 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.49e-10
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1  MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 33
          MAITEFLLF+LTATLGGMFLCG NDFITIFV P
Sbjct: 1  MAITEFLLFILTATLGGMFLCGANDFITIFVAP 33

[Close]
BLAST of MELO.jh031004.1 vs. ExPASy TrEMBL
Match: Q9XQE2 (NdhB protein (Fragment) OS=Solanum nigrum OX=4112 GN=ndhB PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.72e-10
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 33
          MAITEFLLFVLTATLGGMFLCG ND ITIFV P
Sbjct: 1  MAITEFLLFVLTATLGGMFLCGANDLITIFVAP 33

[Close]
BLAST of MELO.jh031004.1 vs. ExPASy TrEMBL
Match: A0A2U9A0T2 (NADH-plastoquinone oxidoreductase subunit 2 OS=Gentiana veitchiorum OX=308435 GN=ndhB PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.80e-10
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1   MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 33
           M+ITEFLLF+LTATLGGMFLCG NDFITIFV P
Sbjct: 124 MSITEFLLFILTATLGGMFLCGANDFITIFVTP 156

[Close]
BLAST of MELO.jh031004.1 vs. ExPASy TrEMBL
Match: J9Y2N1 (NADH-plastoquinone oxidoreductase subunit 2 (Fragment) OS=Fragaria pentaphylla OX=101014 GN=ndhB PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.29e-10
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1   MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 33
           MAITEFLLFVLTATLGGMFLCG ND ITIFV P
Sbjct: 87  MAITEFLLFVLTATLGGMFLCGANDLITIFVAP 119

[Close]
BLAST of MELO.jh031004.1 vs. ExPASy TrEMBL
Match: U7E157 (Proton_antipo_M domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_0028s00410g PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.43e-10
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 33
          MAITEFLLFVLTATLGGMFLCG ND ITIFV P
Sbjct: 1  MAITEFLLFVLTATLGGMFLCGANDLITIFVAP 33

[Close]
BLAST of MELO.jh031004.1 vs. TAIR 10
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 60.1 bits (144), Expect = 3.9e-10
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 34
          MAITEFLLF+LTATLGGMFLCG ND ITIFV P
Sbjct: 1  MAITEFLLFILTATLGGMFLCGANDLITIFVAP 33

[Close]
BLAST of MELO.jh031004.1 vs. TAIR 10
Match: ATCG01250.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 60.1 bits (144), Expect = 3.9e-10
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 1  MAITEFLLFVLTATLGGMFLCGVNDFITIFVDP 34
          MAITEFLLF+LTATLGGMFLCG ND ITIFV P
Sbjct: 1  MAITEFLLFILTATLGGMFLCGANDLITIFVAP 33

The following BLAST results are available for this feature:
BLAST of MELO.jh031004.1 vs. NCBI nr
Match NameE-valueIdentityDescription
QUV74413.11.95e-1090.91NADH-plastoquinone oxidoreductase subunit 5 [Phragmipedium besseae] >QUV74422.1 ... [more]
KAF9613623.12.14e-1093.94hypothetical protein IFM89_009449 [Coptis chinensis][more]
VFQ83862.13.08e-1090.91unnamed protein product [Cuscuta campestris][more]
CAB41473.15.61e-1090.91ndhB, partial [Solanum nigrum][more]
YP_009495371.15.79e-1087.88NADH-plastoquinone oxidoreductase subunit 2 [Gentiana veitchiorum] >YP_009495380... [more]
BLAST of MELO.jh031004.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0CC488.5e-1093.94NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica OX=1... [more]
P0CC768.5e-1093.94NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Ipomoea purpurea OX... [more]
P0CC498.5e-1093.94NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Coffea arabica OX=1... [more]
P0CC778.5e-1093.94NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Ipomoea purpurea OX... [more]
Q67IE28.5e-1093.94NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Phormium tenax OX=514... [more]
BLAST of MELO.jh031004.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A484M4U61.49e-1090.91Proton_antipo_M domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCA... [more]
Q9XQE22.72e-1090.91NdhB protein (Fragment) OS=Solanum nigrum OX=4112 GN=ndhB PE=4 SV=1[more]
A0A2U9A0T22.80e-1087.88NADH-plastoquinone oxidoreductase subunit 2 OS=Gentiana veitchiorum OX=308435 GN... [more]
J9Y2N13.29e-1090.91NADH-plastoquinone oxidoreductase subunit 2 (Fragment) OS=Fragaria pentaphylla O... [more]
U7E1573.43e-1090.91Proton_antipo_M domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPT... [more]
BLAST of MELO.jh031004.1 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00890.13.9e-1087.88NADH-Ubiquinone/plastoquinone (complex I) protein [more]
ATCG01250.13.9e-1087.88NADH-Ubiquinone/plastoquinone (complex I) protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh031004.1.t1MELO.jh031004.1.t1mRNA