MELO.jh030964.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh030964.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTransmembrane protein, putative
Locationchr05: 15953714 .. 15954146 (-)
RNA-Seq ExpressionMELO.jh030964.1
SyntenyMELO.jh030964.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGCCTTAAGAGCCTATTCGCTACACACCTGCATCGTTACCCACAAAACACCACACAAAACAATACCTAAAGAATAGATATGGTGAATGGGATGCAAAATTGTGTTGAATTAGCACCAATAATTACCGTTCCACGTAAAAGGTGTTCAAGTTCCCCACAATTAGAGACCATTGTTGAAGAATACCCCAAGGGTTTTGGGGTTTTAAAAAGGAGAATTTTATTTGTTCTTCCAATTTTGTTGTCTTTTATATCTTATGTCATTTTGTATAGGCAATATTAATATTAGTTTTATGTTTAAATAATATTTGCTTTTATCGCTTGGATTTCATGGTATTTCGTTTTACCTTAGTTTGGTGTTTAGAAACAGTGAGTTATATCGCATCAAGGTTCTTTGATTACTCAATCGCCTAGTAATACATATACTTTCCTTCAC

mRNA sequence

TTGCCTTAAGAGCCTATTCGCTACACACCTGCATCGTTACCCACAAAACACCACACAAAACAATACCTAAAGAATAGATATGGTGAATGGGATGCAAAATTGTGTTGAATTAGCACCAATAATTACCGTTCCACGTAAAAGGTGTTCAAGTTCCCCACAATTAGAGACCATTGTTGAAGAATACCCCAAGGGTTTTGGGGTTTTAAAAAGGAGAATTTTATTTGTTCTTCCAATTTTGTTGTCTTTTATATCTTATGTCATTTTGTATAGGCAATATTAATATTAGTTTTATGTTTAAATAATATTTGCTTTTATCGCTTGGATTTCATGGTATTTCGTTTTACCTTAGTTTGGTGTTTAGAAACAGTGAGTTATATCGCATCAAGGTTCTTTGATTACTCAATCGCCTAGTAATACATATACTTTCCTTCAC

Coding sequence (CDS)

ATGGTGAATGGGATGCAAAATTGTGTTGAATTAGCACCAATAATTACCGTTCCACGTAAAAGGTGTTCAAGTTCCCCACAATTAGAGACCATTGTTGAAGAATACCCCAAGGGTTTTGGGGTTTTAAAAAGGAGAATTTTATTTGTTCTTCCAATTTTGTTGTCTTTTATATCTTATGTCATTTTGTATAGGCAATATTAA

Protein sequence

MVNGMQNCVELAPIITVPRKRCSSSPQLETIVEEYPKGFGVLKRRILFVLPILLSFISYVILYRQY
Homology
BLAST of MELO.jh030964.1 vs. NCBI nr
Match: ONI04037.1 (hypothetical protein PRUPE_6G298100 [Prunus persica])

HSP 1 Score: 74.3 bits (181), Expect = 1.11e-15
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 1  MVNG---MQNCVELAPIITVPRKRCSSSPQLETIVEEYPKGFGVLKRRILFVLPILLSFI 60
          MV G   M N VE+AP I +  ++CS+SP+LETIVEE  + F +L +R++F+LP+ LSFI
Sbjct: 1  MVKGGRYMHNWVEVAPPIMISHEKCSNSPKLETIVEEGSESFEILPKRVVFLLPVFLSFI 60

Query: 61 SYVILYRQ 65
          SY+ILYRQ
Sbjct: 61 SYLILYRQ 68

BLAST of MELO.jh030964.1 vs. NCBI nr
Match: TQD95725.1 (hypothetical protein C1H46_018669 [Malus baccata])

HSP 1 Score: 65.9 bits (159), Expect = 2.10e-12
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 5  MQNCVELAPIITVPRKRCSSSPQLETIVEEYPKGFGVLKRRILFVLPILLSFISYVILYR 64
          M + VE+AP   + R++CSS P+LETIVEE  + F +L +R++F+LP+  S +SY+ILYR
Sbjct: 1  MHSWVEVAPPQVISREKCSSFPKLETIVEEGSESFEILPKRVVFLLPVFFSLVSYLILYR 60

BLAST of MELO.jh030964.1 vs. NCBI nr
Match: AES61821.2 (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 63.9 bits (154), Expect = 5.34e-11
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 2  VNGMQNCVELAPIITVPRKRCSSS-PQLETIVEEYPKGFGVLKRRILFVLPILLSFISYV 61
          + G+QNC E+AP + +  K+CSS  P+LE I+EE PK F  + +R+LF++P  +S +SY 
Sbjct: 8  LRGIQNCGEVAPALIITPKKCSSKFPRLEPIIEEGPKSFQTMPKRMLFLVPAFISCVSYF 67

Query: 62 ILYR 64
          +LYR
Sbjct: 68 LLYR 71

BLAST of MELO.jh030964.1 vs. NCBI nr
Match: AES99192.2 (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 61.2 bits (147), Expect = 2.04e-10
Identity = 29/64 (45.31%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 2  VNGMQNCVELAPIITVPRKRCSSS-PQLETIVEEYPKGFGVLKRRILFVLPILLSFISYV 61
          + G+QNC E+AP +    K+CSS  P+LE I+EE P+ F ++ +R+LF++P  +S +SY 
Sbjct: 6  MRGIQNCGEVAPALIRTPKKCSSKFPRLEPIIEEGPESFQIMPKRMLFLVPTFISCVSYF 65

Query: 62 ILYR 64
          +LYR
Sbjct: 66 LLYR 69

BLAST of MELO.jh030964.1 vs. NCBI nr
Match: KAB2621778.1 (transmembrane protein [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 56.6 bits (135), Expect = 1.18e-08
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 9  VELAPIITVPRKRCSSSPQLETIVEEYPKGFGVLKRRILFVLPILLSFISYVILYRQ 65
          VE+AP   +  K+CS+ P+LETI EE  +   +L +R++F+LP+  S +SY+ILY Q
Sbjct: 14 VEVAPPQVISHKKCSNFPKLETIAEEGSESLEILPKRVVFLLPVFFSLVSYLILYSQ 70

BLAST of MELO.jh030964.1 vs. ExPASy TrEMBL
Match: A0A251NXL3 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G298100 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.38e-16
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 1  MVNG---MQNCVELAPIITVPRKRCSSSPQLETIVEEYPKGFGVLKRRILFVLPILLSFI 60
          MV G   M N VE+AP I +  ++CS+SP+LETIVEE  + F +L +R++F+LP+ LSFI
Sbjct: 1  MVKGGRYMHNWVEVAPPIMISHEKCSNSPKLETIVEEGSESFEILPKRVVFLLPVFLSFI 60

Query: 61 SYVILYRQ 65
          SY+ILYRQ
Sbjct: 61 SYLILYRQ 68

BLAST of MELO.jh030964.1 vs. ExPASy TrEMBL
Match: A0A540MAE9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_018669 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.02e-12
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 5  MQNCVELAPIITVPRKRCSSSPQLETIVEEYPKGFGVLKRRILFVLPILLSFISYVILYR 64
          M + VE+AP   + R++CSS P+LETIVEE  + F +L +R++F+LP+  S +SY+ILYR
Sbjct: 1  MHSWVEVAPPQVISREKCSSFPKLETIVEEGSESFEILPKRVVFLLPVFFSLVSYLILYR 60

BLAST of MELO.jh030964.1 vs. ExPASy TrEMBL
Match: G7I2R6 (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_1g089090 PE=4 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.59e-11
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 2  VNGMQNCVELAPIITVPRKRCSSS-PQLETIVEEYPKGFGVLKRRILFVLPILLSFISYV 61
          + G+QNC E+AP + +  K+CSS  P+LE I+EE PK F  + +R+LF++P  +S +SY 
Sbjct: 8  LRGIQNCGEVAPALIITPKKCSSKFPRLEPIIEEGPKSFQTMPKRMLFLVPAFISCVSYF 67

Query: 62 ILYR 64
          +LYR
Sbjct: 68 LLYR 71

BLAST of MELO.jh030964.1 vs. ExPASy TrEMBL
Match: G7KG05 (Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_5g077630 PE=4 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 9.88e-11
Identity = 29/64 (45.31%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 2  VNGMQNCVELAPIITVPRKRCSSS-PQLETIVEEYPKGFGVLKRRILFVLPILLSFISYV 61
          + G+QNC E+AP +    K+CSS  P+LE I+EE P+ F ++ +R+LF++P  +S +SY 
Sbjct: 6  MRGIQNCGEVAPALIRTPKKCSSKFPRLEPIIEEGPESFQIMPKRMLFLVPTFISCVSYF 65

Query: 62 ILYR 64
          +LYR
Sbjct: 66 LLYR 69

BLAST of MELO.jh030964.1 vs. ExPASy TrEMBL
Match: A0A5N5H2I2 (Transmembrane protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_023960 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.69e-09
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 9  VELAPIITVPRKRCSSSPQLETIVEEYPKGFGVLKRRILFVLPILLSFISYVILYRQ 65
          VE+AP   +  K+CS+ P+LETI EE  +   +L +R++F+LP+  S +SY+ILY Q
Sbjct: 14 VEVAPPQVISHKKCSNFPKLETIAEEGSESLEILPKRVVFLLPVFFSLVSYLILYSQ 70

BLAST of MELO.jh030964.1 vs. TAIR 10
Match: AT4G18422.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 4.9e-04
Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0

Query: 10 ELAPIITVPRKRCSSSPQLETIVEEYPKGFGVLKR----------RILFVLPILLSFISY 66
          E+AP   + R+ CS SP LETI EE    F    R          R+  ++P ++S +S 
Sbjct: 16 EMAPAPVISRRSCSMSPTLETIFEERSDDFCHQDRYHTVVVGQRNRLFLLVPAIISAVSC 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ONI04037.11.11e-1555.88hypothetical protein PRUPE_6G298100 [Prunus persica][more]
TQD95725.12.10e-1250.82hypothetical protein C1H46_018669 [Malus baccata][more]
AES61821.25.34e-1146.88transmembrane protein, putative [Medicago truncatula][more]
AES99192.22.04e-1045.31transmembrane protein, putative [Medicago truncatula][more]
KAB2621778.11.18e-0845.61transmembrane protein [Pyrus ussuriensis x Pyrus communis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A251NXL35.38e-1655.88Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G298100 PE=4 SV=1[more]
A0A540MAE91.02e-1250.82Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_018669 PE=4 SV=1[more]
G7I2R62.59e-1146.88Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_1g089090 P... [more]
G7KG059.88e-1145.31Transmembrane protein, putative OS=Medicago truncatula OX=3880 GN=MTR_5g077630 P... [more]
A0A5N5H2I25.69e-0945.61Transmembrane protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_... [more]
Match NameE-valueIdentityDescription
AT4G18422.14.9e-0437.88unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36063:SF3BNAA06G36170D PROTEINcoord: 2..65
NoneNo IPR availablePANTHERPTHR36063ARABIDOPSIS THALIANA GENOMIC DNA, CHROMOSOME 5, P1 CLONE:MOK16coord: 2..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh030964.1.t1MELO.jh030964.1.t1mRNA