MELO.jh030958.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh030958.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr05: 17065484 .. 17066305 (+)
RNA-Seq ExpressionMELO.jh030958.1
SyntenyMELO.jh030958.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGGCAGAGCCACGAACGACGAATGATAAAAAATGATGACAGCCACGAACAACTGGTGATATTTGGCGATGACCGACGTCTAACGGTGACCCACAACGCGAACAGATCAGTAACACTCGAATGGCTACGCGCGAACGGCTCCACCCTAACATTTGACGATGACCCACTTCAACGAGGCTTATGAACAGTGGTAATGGCTTACCTGTTTTTGATTTCAAGACATTGCGCACAGCTGACCCTTTTATTGCTGGTAGGCTTGTTTCTATTCCATAATTTGAAGTTAAATATTTGGTATTTTCTTTTTCGATTTCGGATTATCATAGGTTGGTTTCTAAATGCTTACTTTCTACAATTCCCTAAGAAAGATGAAGAGATCTTACTTTACTTGAATAGATCTGTTTTATATAGGTTGTTCAAATGTGTCCTTAAGTTCTAAGGTTCCACGACCATAAGAAAGCTCAAACATGAAGAAGTCAAAGATTTTGCTTGTCCTTTTTGAATGAATGACCTATAAGTAATTGTAGGCTCCATAAGACAATGGAGTGTATCCATTCGACACTAGGTGGAGGTGGCAAGAAAAAAGAAAGCAAAAAGAATAGCGGGATGGACTATGAACAGACCATCAGTCCTGGACACATACCAATCTTGGCTAAAAGATGTCTTGGATCTGATCACTAGAAGAAGGAGAAACAGAAAGGTTCTTAGTCTTCAATATGTAGTTCTCATTCTTTTTCTTTTTTCTAATATTCTATGTTAGTAGATTTAGATAATGAGCACACTTTTGAATTATTTCATTTATTATCTTGAAAATTTTACTCGTAA

mRNA sequence

ACGGCAGAGCCACGAACGACGAATGATAAAAAATGATGACAGCCACGAACAACTGGTGATATTTGGCGATGACCGACGTCTAACGGTGACCCACAACGCGAACAGATCAGTAACACTCGAATGGCTACGCGCGAACGGCTCCACCCTAACATTTGACGATGACCCACTTCAACGAGGCTTATGAACAGTGGTAATGGCTTACCTGTTTTTGATTTCAAGACATTGCGCACAGCTGACCCTTTTATTGCTGATCTGTTTTATATAGGTTGTTCAAATGTGTCCTTAAGTTCTAAGGTTCCACGACCATAAGAAAGCTCAAACATGAAGAAGTCAAAGATTTTGCTTGTCCTTTTTGAATGAATGACCTATAAGTAATTGTAGGCTCCATAAGACAATGGAGTGTATCCATTCGACACTAGGTGGAGGTGGCAAGAAAAAAGAAAGCAAAAAGAATAGCGGGATGGACTATGAACAGACCATCAGTCCTGGACACATACCAATCTTGGCTAAAAGATGTCTTGGATCTGATCACTAGAAGAAGGAGAAACAGAAAGGTTCTTAGTCTTCAATATGTAGTTCTCATTCTTTTTCTTTTTTCTAATATTCTATGTTAGTAGATTTAGATAATGAGCACACTTTTGAATTATTTCATTTATTATCTTGAAAATTTTACTCGTAA

Coding sequence (CDS)

ATGATAAAAAATGATGACAGCCACGAACAACTGGTGATATTTGGCGATGACCGACGTCTAACGGTGACCCACAACGCGAACAGATCAGTAACACTCGAATGGCTACGCGCGAACGGCTCCACCCTAACATTTGACGATGACCCACTTCAACGAGGCTTATGA

Protein sequence

MIKNDDSHEQLVIFGDDRRLTVTHNANRSVTLEWLRANGSTLTFDDDPLQRGL
Homology
[Close]
BLAST of MELO.jh030958.1 vs. NCBI nr
Match: TYK05458.1 (anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 47.8 bits (112), Expect = 1.55e-04
Identity = 24/36 (66.67%), Postives = 26/36 (72.22%), Query Frame = 0 

Query: 17 DRRLTVTHNANRSVTLEWLRANGSTLTFDDDPLQRG 52
          +RRLT TH+AN   TLE L ANGST T   DPLQRG
Sbjct: 17 ERRLTTTHDANGLATLERLHANGSTRTSGCDPLQRG 52

[Close]
BLAST of MELO.jh030958.1 vs. ExPASy TrEMBL
Match: A0A5D3C2N0 (Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001620 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.51e-05
Identity = 24/36 (66.67%), Postives = 26/36 (72.22%), Query Frame = 0 

Query: 17 DRRLTVTHNANRSVTLEWLRANGSTLTFDDDPLQRG 52
          +RRLT TH+AN   TLE L ANGST T   DPLQRG
Sbjct: 17 ERRLTTTHDANGLATLERLHANGSTRTSGCDPLQRG 52

The following BLAST results are available for this feature:
BLAST of MELO.jh030958.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK05458.11.55e-0466.67anaphase-promoting complex subunit 4 [Cucumis melo var. makuwa][more]
BLAST of MELO.jh030958.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh030958.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C2N07.51e-0566.67Anaphase-promoting complex subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of MELO.jh030958.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh030958.1.t1MELO.jh030958.1.t1mRNA