MELO.jh030940.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh030940.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Location	chr05: 9703199 .. 9703657 (+)
RNA-Seq Expression	MELO.jh030940.1
Synteny	MELO.jh030940.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACCGGTTAGCTCGAGCAAGAACCTCTCCTCTTTTGAAACTCAACATCAAGAAGAAAAGAAAAGCCACTTCATTAGTTGAGTCCGGGTGCAAATAATCTCTCATGGATTTATTGGCGCTGCACTTTTTTTCTTGGCAGGAACAAGTTATGATAGAATACGTCTGGTTTATCTCGATGAAATGGGAGGACTGGCTATCCCAATTCCAAAAATATTTATGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCTGGTATGAGCGGTTTTGTTGCAGAATTAATAGTCTTTTTTGGAATAATTACTAGCCAAAAATATCTTTTAATGGCAAAAATAGTAATTACTTTGGTAATGGCAATTGGAATTATATTACTAGCCAAAAATATCTTTTAATGGCAAAAATAGTAATTACTTTGGTAATGGCAATTGGAATTATATTAACTCCCATTTATTTA

mRNA sequence

AAGACCGGTTAGCTCGAGCAAGAACCTCTCCTCTTTTGAAACTCAACATCAAGAAGAAAAGAAAAGCCACTTCATTAGTTGAGTCCGGGTGCAAATAATCTCTCATGGATTTATTGGCGCTGCACTTTTTTTCTTGGCAGGAACAAGTTATGATAGAATACGTCTGGTTTATCTCGATGAAATGGGAGGACTGGCTATCCCAATTCCAAAAATATTTATGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCTGGTATGAGCGGTTTTGTTGCAGAATTAATAGTCTTTTTTGGAATAATTACTAGCCAAAAATATCTTTTAATGGCAAAAATAGTAATTACTTTGGTAATGGCAATTGGAATTATATTACTAGCCAAAAATATCTTTTAATGGCAAAAATAGTAATTACTTTGGTAATGGCAATTGGAATTATATTAACTCCCATTTATTTA

Coding sequence (CDS)

ATGGGAGGACTGGCTATCCCAATTCCAAAAATATTTATGACTTTCAGTATCTTATCGATGGCTTCCCTTGCATTGCCTGGTATGAGCGGTTTTGTTGCAGAATTAATAGTCTTTTTTGGAATAATTACTAGCCAAAAATATCTTTTAATGGCAAAAATAGTAATTACTTTGGTAATGGCAATTGGAATTATATTACTAGCCAAAAATATCTTTTAA

Protein sequence

MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMAIGIILLAKNIF

Homology

[Close]

BLAST of MELO.jh030940.1 vs. NCBI nr
Match: ASY97076.1 (NADH dehydrogenase subunit 4 [Cucumis melo var. cantalupo])

HSP 1 Score: 111 bits (278), Expect = 7.37e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA
Sbjct: 333 MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 392

Query: 61  IGIIL 65
           IGIIL
Sbjct: 393 IGIIL 397

[Close]

BLAST of MELO.jh030940.1 vs. NCBI nr
Match: ASY96380.1 (NADH dehydrogenase subunit 4 [Cucumis melo subsp. agrestis])

HSP 1 Score: 111 bits (278), Expect = 7.37e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA
Sbjct: 333 MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 392

Query: 61  IGIIL 65
           IGIIL
Sbjct: 393 IGIIL 397

[Close]

BLAST of MELO.jh030940.1 vs. NCBI nr
Match: ASY96467.1 (NADH dehydrogenase subunit 4 [Cucumis melo subsp. agrestis] >ASY96640.1 NADH dehydrogenase subunit 4 [Cucumis melo var. conomon] >ASY96728.1 NADH dehydrogenase subunit 4 [Cucumis melo var. makuwa] >ASY96815.1 NADH dehydrogenase subunit 4 [Cucumis melo var. momordica] >ASY96902.1 NADH dehydrogenase subunit 4 [Cucumis melo var. dudaim] >ASY96989.1 NADH dehydrogenase subunit 4 [Cucumis melo var. cantalupo] >ASY97163.1 NADH dehydrogenase subunit 4 [Cucumis melo var. inodorus] >ASY97337.1 NADH dehydrogenase subunit 4 [Cucumis melo var. flexuosus] >QJF46436.1 NADH dehydrogenase subunit 4 [Cucumis melo])

HSP 1 Score: 111 bits (278), Expect = 7.37e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA
Sbjct: 333 MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 392

Query: 61  IGIIL 65
           IGIIL
Sbjct: 393 IGIIL 397

[Close]

BLAST of MELO.jh030940.1 vs. NCBI nr
Match: YP_004841835.1 (NADH-plastoquinone oxidoreductase subunit 4 [Cucumis melo subsp. melo] >YP_009860125.1 NADH-plastoquinone oxidoreductase subunit 4 [Cucumis melo subsp. agrestis] >AEM76945.1 NADH-plastoquinone oxidoreductase subunit 4 [Cucumis melo subsp. melo] >QKK36709.1 NADH-plastoquinone oxidoreductase subunit 4 [Cucumis melo subsp. agrestis])

HSP 1 Score: 111 bits (278), Expect = 9.56e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA
Sbjct: 370 MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 429

Query: 61  IGIIL 65
           IGIIL
Sbjct: 430 IGIIL 434

[Close]

BLAST of MELO.jh030940.1 vs. NCBI nr
Match: QHB76015.1 (NADH dehydrogenase subunit 4 [Cucumis melo subsp. melo])

HSP 1 Score: 110 bits (274), Expect = 2.71e-26
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLM KIVITLVMA
Sbjct: 333 MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKIVITLVMA 392

Query: 61  IGIIL 65
           IGIIL
Sbjct: 393 IGIIL 397

[Close]

BLAST of MELO.jh030940.1 vs. ExPASy Swiss-Prot
Match: Q4VZL8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhD PE=2 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 3.8e-23
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIF TFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLM K+VITLVMA
Sbjct: 364 MGGLAIPIPKIFTTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMTKMVITLVMA 423

Query: 61  IGIIL 66
           IGIIL
Sbjct: 424 IGIIL 428

[Close]

BLAST of MELO.jh030940.1 vs. ExPASy Swiss-Prot
Match: Q09MC6 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrus sinensis OX=2711 GN=ndhD PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-21
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIF  FSILSMASLALPGMSGFVAELIVFFGIITSQK+ LM KIVIT VMA
Sbjct: 364 MGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMA 423

Query: 61  IGIIL 66
           IG+IL
Sbjct: 424 IGMIL 428

[Close]

BLAST of MELO.jh030940.1 vs. ExPASy Swiss-Prot
Match: Q09WW8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica OX=248361 GN=ndhD PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-20
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGG+AI IPKIF TFSILSMASLALPGMSGFVAELI+FFGI+TSQKYLLM KI+IT VMA
Sbjct: 364 MGGMAITIPKIFTTFSILSMASLALPGMSGFVAELILFFGILTSQKYLLMTKILITFVMA 423

Query: 61  IGIIL 66
           IG+IL
Sbjct: 424 IGMIL 428

[Close]

BLAST of MELO.jh030940.1 vs. ExPASy Swiss-Prot
Match: Q0ZIW8 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhD PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-20
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGG+AIP+PKIF  FSILSMASLALPGMSGFVAELIVFFGIITSQK+LLM KI+IT VMA
Sbjct: 364 MGGIAIPMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKFLLMPKILITFVMA 423

Query: 61  IGIIL 66
           IG+IL
Sbjct: 424 IGMIL 428

[Close]

BLAST of MELO.jh030940.1 vs. ExPASy Swiss-Prot
Match: B1A984 (NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Carica papaya OX=3649 GN=ndhD PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.9e-20
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGG+AI +PKIF  FSILSMASLALPGMSGFVAELIVFFGIITSQKY LMAKI+IT VMA
Sbjct: 364 MGGMAISMPKIFTMFSILSMASLALPGMSGFVAELIVFFGIITSQKYFLMAKILITFVMA 423

Query: 61  IGIIL 66
           IG+IL
Sbjct: 424 IGMIL 428

[Close]

BLAST of MELO.jh030940.1 vs. ExPASy TrEMBL
Match: A0A286NFL1 (NADH dehydrogenase subunit 4 OS=Cucumis melo var. cantalupensis OX=3658 GN=ndhD PE=3 SV=1)

HSP 1 Score: 111 bits (278), Expect = 3.57e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA
Sbjct: 333 MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 392

Query: 61  IGIIL 65
           IGIIL
Sbjct: 393 IGIIL 397

[Close]

BLAST of MELO.jh030940.1 vs. ExPASy TrEMBL
Match: A0A286NFU8 (NADH dehydrogenase subunit 4 OS=Cucumis melo var. flexuosus OX=1120798 GN=ndhD PE=3 SV=1)

HSP 1 Score: 111 bits (278), Expect = 3.57e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA
Sbjct: 333 MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 392

Query: 61  IGIIL 65
           IGIIL
Sbjct: 393 IGIIL 397

[Close]

BLAST of MELO.jh030940.1 vs. ExPASy TrEMBL
Match: A0A249RY49 (NADH dehydrogenase subunit 4 OS=Cucumis melo subsp. agrestis OX=217619 GN=ndhD PE=3 SV=1)

HSP 1 Score: 111 bits (278), Expect = 3.57e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA
Sbjct: 333 MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 392

Query: 61  IGIIL 65
           IGIIL
Sbjct: 393 IGIIL 397

[Close]

BLAST of MELO.jh030940.1 vs. ExPASy TrEMBL
Match: A0A249RZ49 (NADH dehydrogenase subunit 4 OS=Cucumis melo var. dudaim OX=2034236 GN=ndhD PE=3 SV=1)

HSP 1 Score: 111 bits (278), Expect = 3.57e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA
Sbjct: 333 MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 392

Query: 61  IGIIL 65
           IGIIL
Sbjct: 393 IGIIL 397

[Close]

BLAST of MELO.jh030940.1 vs. ExPASy TrEMBL
Match: A0A249RYE1 (NADH dehydrogenase subunit 4 OS=Cucumis melo var. conomon OX=3657 GN=ndhD PE=3 SV=1)

HSP 1 Score: 111 bits (278), Expect = 3.57e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA
Sbjct: 333 MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 392

Query: 61  IGIIL 65
           IGIIL
Sbjct: 393 IGIIL 397

[Close]

BLAST of MELO.jh030940.1 vs. TAIR 10
Match: ATCG01050.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 90.5 bits (223), Expect = 5.8e-19
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1   MGGLAIPIPKIFMTFSILSMASLALPGMSGFVAELIVFFGIITSQKYLLMAKIVITLVMA 60
           MGG+AI IPKIF  F+ILSMASLALPGMSGF+AE IVFFGIITSQKY L++KI I  VMA
Sbjct: 370 MGGMAISIPKIFTMFTILSMASLALPGMSGFIAEFIVFFGIITSQKYFLISKIFIIFVMA 429

Query: 61  IGIIL 66
           IG+IL
Sbjct: 430 IGMIL 434

The following BLAST results are available for this feature:

BLAST of MELO.jh030940.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ASY97076.1	7.37e-27	100.00	NADH dehydrogenase subunit 4 [Cucumis melo var. cantalupo]	[more]
ASY96380.1	7.37e-27	100.00	NADH dehydrogenase subunit 4 [Cucumis melo subsp. agrestis]	[more]
ASY96467.1	7.37e-27	100.00	NADH dehydrogenase subunit 4 [Cucumis melo subsp. agrestis] >ASY96640.1 NADH deh...	[more]
YP_004841835.1	9.56e-27	100.00	NADH-plastoquinone oxidoreductase subunit 4 [Cucumis melo subsp. melo] >YP_00986...	[more]
QHB76015.1	2.71e-26	98.46	NADH dehydrogenase subunit 4 [Cucumis melo subsp. melo]	[more]

BLAST of MELO.jh030940.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL8	3.8e-23	95.38	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Cucumis sativus OX=3659...	[more]
Q09MC6	6.1e-21	89.23	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Citrus sinensis OX=2711...	[more]
Q09WW8	1.4e-20	86.15	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Morus indica OX=248361 ...	[more]
Q0ZIW8	1.8e-20	86.15	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Vitis vinifera OX=29760...	[more]
B1A984	3.9e-20	86.15	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Carica papaya OX=3649 G...	[more]

BLAST of MELO.jh030940.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A286NFL1	3.57e-27	100.00	NADH dehydrogenase subunit 4 OS=Cucumis melo var. cantalupensis OX=3658 GN=ndhD ...	[more]
A0A286NFU8	3.57e-27	100.00	NADH dehydrogenase subunit 4 OS=Cucumis melo var. flexuosus OX=1120798 GN=ndhD P...	[more]
A0A249RY49	3.57e-27	100.00	NADH dehydrogenase subunit 4 OS=Cucumis melo subsp. agrestis OX=217619 GN=ndhD P...	[more]
A0A249RZ49	3.57e-27	100.00	NADH dehydrogenase subunit 4 OS=Cucumis melo var. dudaim OX=2034236 GN=ndhD PE=3...	[more]
A0A249RYE1	3.57e-27	100.00	NADH dehydrogenase subunit 4 OS=Cucumis melo var. conomon OX=3657 GN=ndhD PE=3 S...	[more]

BLAST of MELO.jh030940.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01050.1	5.8e-19	78.46	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43507:SF12	NAD(P)H-QUINONE OXIDOREDUCTASE CHAIN 4, CHLOROPLASTIC	coord: 1..66
IPR003918	NADH:ubiquinone oxidoreductase	PANTHER	PTHR43507	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh030940.1.t1	MELO.jh030940.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity