MELO.jh030871.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh030871.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr05: 629404 .. 629783 (-)
RNA-Seq ExpressionMELO.jh030871.1
SyntenyMELO.jh030871.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAACTCCACTGATATCATTTCTAATTCTTTCATAATATCAAATCCCATTACTGCAATGGAAAGCTGCAGAGACATTTTCATTCAAGTCCAAAGCAAGAACAAGAAGGAAAAAGATTCTCCAATAATGAAGCAAACGAAAGGGAAAGAAGACATAAATCAAAGAGCTGAAGCTTTTATCAGCAACTTTCGCAATCAGCTAAAGAGTCACTGAACCAATGATTCATCTCTATGGAAGAATTAGTTCTTTTAATAAGTTCTTGTAGTTCCTTTAATATTGATCAATTATATTATAGCACATGATAAATGTTTAATTTTTATTTTTGGGTCTTGACTGTGATTTCATTTAAACCATAATGCTATAAGATCTTCATCAAGTAAA

mRNA sequence

CAAACTCCACTGATATCATTTCTAATTCTTTCATAATATCAAATCCCATTACTGCAATGGAAAGCTGCAGAGACATTTTCATTCAAGTCCAAAGCAAGAACAAGAAGGAAAAAGATTCTCCAATAATGAAGCAAACGAAAGGGAAAGAAGACATAAATCAAAGAGCTGAAGCTTTTATCAGCAACTTTCGCAATCAGCTAAAGAGTCACTGAACCAATGATTCATCTCTATGGAAGAATTAGTTCTTTTAATAAGTTCTTGTAGTTCCTTTAATATTGATCAATTATATTATAGCACATGATAAATGTTTAATTTTTATTTTTGGGTCTTGACTGTGATTTCATTTAAACCATAATGCTATAAGATCTTCATCAAGTAAA

Coding sequence (CDS)

ATGGAAAGCTGCAGAGACATTTTCATTCAAGTCCAAAGCAAGAACAAGAAGGAAAAAGATTCTCCAATAATGAAGCAAACGAAAGGGAAAGAAGACATAAATCAAAGAGCTGAAGCTTTTATCAGCAACTTTCGCAATCAGCTAAAGAGTCACTGA

Protein sequence

MESCRDIFIQVQSKNKKEKDSPIMKQTKGKEDINQRAEAFISNFRNQLKSH
Homology
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BLAST of MELO.jh030871.1 vs. NCBI nr
Match: KAG6605871.1 (hypothetical protein SDJN03_03188, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 46.2 bits (108), Expect = 7.19e-04
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 1   MESCRDIFIQVQSKNKKEKDSPIMK--------QTKGKEDINQRAEAFISNFRNQL 48
           MES RDIFIQVQ+ NK ++  P  K        +   K+DIN+RAEAFISNF NQL
Sbjct: 215 MESYRDIFIQVQTTNK-DQTCPRRKLMATTTTTEKDTKDDINERAEAFISNFHNQL 269

The following BLAST results are available for this feature:
BLAST of MELO.jh030871.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605871.17.19e-0455.36hypothetical protein SDJN03_03188, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MELO.jh030871.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh030871.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh030871.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 30..49
e-value: 2.6E-7
score: 30.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh030871.1.t1MELO.jh030871.1.t1mRNA