MELO.jh030701.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh030701.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein CHROMATIN REMODELING 5 isoform X1
Locationchr07: 4553222 .. 4553714 (+)
RNA-Seq ExpressionMELO.jh030701.1
SyntenyMELO.jh030701.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTTCCGTTACCGCATCGCGCTCGTGCCTCACGTGGAACACTCACCCTCCTCACCATCGGCACGTTATCGGCTCGGGATGTCCGTTGTTGAGCGATTTCGGTTGCAATATCCCGGCACCGGAGGCTCATCCAGCAAGTCAGTTTTTAGCGAAATGGTTCGAGGCACGTGGGGGGTCGCTCGGGAATGGGCTTAGGCTGTGTTCGCACGTGGGGTGTGGACATCAATACAGTATTGTTGATGACGATGATCAGCTGGCCGCCTCCTCCTCCTCTGTGTTGCAGAGGACAGTGAAGAGCCTTCACTTCGGCGACGGAGATGAGAAAGAGAGAGTCGCGAAGGAAATTGAGAGGTTGATTAAAAAAGAGAGCGGTAACTCGAAGGTTAGAAAGCTAATTGTGGATCTTGGAGTTATTCCTGCTTTGGTCGCCATGGCGGACTCCGATCACTTCGCGGTGAAGGCCTTGATTCAACTTGCTAATCATACTTTCTT

mRNA sequence

CTTCTTCCGTTACCGCATCGCGCTCGTGCCTCACGTGGAACACTCACCCTCCTCACCATCGGCACGTTATCGGCTCGGGATGTCCGTTGTTGAGCGATTTCGGTTGCAATATCCCGGCACCGGAGGCTCATCCAGCAAGTCAGTTTTTAGCGAAATGGTTCGAGGCACGTGGGGGGTCGCTCGGGAATGGGCTTAGGCTGTGTTCGCACGTGGGGTGTGGACATCAATACAGTATTGTTGATGACGATGATCAGCTGGCCGCCTCCTCCTCCTCTGTGTTGCAGAGGACAGTGAAGAGCCTTCACTTCGGCGACGGAGATGAGAAAGAGAGAGTCGCGAAGGAAATTGAGAGGTTGATTAAAAAAGAGAGCGGTAACTCGAAGGTTAGAAAGCTAATTGTGGATCTTGGAGTTATTCCTGCTTTGGTCGCCATGGCGGACTCCGATCACTTCGCGGTGAAGGCCTTGATTCAACTTGCTAATCATACTTTCTT

Coding sequence (CDS)

ATGTCCGTTGTTGAGCGATTTCGGTTGCAATATCCCGGCACCGGAGGCTCATCCAGCAAGTCAGTTTTTAGCGAAATGGTTCGAGGCACGTGGGGGGTCGCTCGGGAATGGGCTTAG

Protein sequence

MSVVERFRLQYPGTGGSSSKSVFSEMVRGTWGVAREWA
Homology
[Close]
BLAST of MELO.jh030701.1 vs. NCBI nr
Match: KAA0032607.1 (protein CHROMATIN REMODELING 5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.60e-09
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MSVVERFRLQYPGTGGSSSKSVFSEMVRGTWG 32
          MSVVERFRLQYP TGGS SKSVFS MV+GTWG
Sbjct: 1  MSVVERFRLQYPSTGGSFSKSVFSGMVQGTWG 32

[Close]
BLAST of MELO.jh030701.1 vs. ExPASy TrEMBL
Match: A0A5A7STC6 (Protein CHROMATIN REMODELING 5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00790 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.73e-10
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MSVVERFRLQYPGTGGSSSKSVFSEMVRGTWG 32
          MSVVERFRLQYP TGGS SKSVFS MV+GTWG
Sbjct: 1  MSVVERFRLQYPSTGGSFSKSVFSGMVQGTWG 32

The following BLAST results are available for this feature:
BLAST of MELO.jh030701.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032607.11.60e-0987.50protein CHROMATIN REMODELING 5 isoform X1 [Cucumis melo var. makuwa][more]
BLAST of MELO.jh030701.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh030701.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7STC67.73e-1087.50Protein CHROMATIN REMODELING 5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695... [more]
BLAST of MELO.jh030701.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh030701.1.t1MELO.jh030701.1.t1mRNA