MELO.jh030438.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh030438.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRNA polymerase II C-terminal domain phosphatase-like 2
Locationchr03: 1033753 .. 1037449 (-)
RNA-Seq ExpressionMELO.jh030438.1
SyntenyMELO.jh030438.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCTTCTCCCTTATGTTCTTTTCTGCCCAAGGGACAAATAGCTCCGACAAAATCGTCCAAGGAAGAACAGGTATATTCCTTCTTCACCTCACCAGCAAGGTGGTTTACAATAATAGGAAGATGTCCCATCATTCTTCTCTTTTTTCATTCTCAATTGCGTAAGAGGTTCTCTCATGAGTTTATGAGTCCGCTCAAGCAACCCAAGTAGCCCTTGGTCTTGATTGTCGTATCTTGTGTTTCTATGAATGTTTCTTAAGTGAGTCGAGAAGAGTTTTTCCAAGATTCAATATCTAACAAAAATGCCTACATGCAAGCAAGGTTTAATTTTCTCAAGTTTTCTTTGAATTAGTGCTTACCTACTGATTTTGAGATACGATTTTAATTATGATGCTATTTATTTACTACTGTTGTGCCAATAAGTTTATTTGTAATTAATAGACCTAATAATTATTCTTGGAATCATTTTAGGCATTTCATCTAGATTTACCAATTTCATTAGATAAGATTAGAACTGGGAAATTTTGAGTCTCTTATAATGAATAAATCTCGAAAGAAATCTGAATATAGTACACATCTAACTTAAATCTCTAAACGGTTAAAGGAGATATACGAGTCTTCATTGGTAGCCTGGTTTAATTTGTCTTCACTTTGTGTTCTCTTTTGAATAAGCAAAATGTTTATATACTTTAACCTTAATCCAAGAACCAAACTTAACAAACTTAAATAATATGAAAAAGATGATTTCATAACCATTTTTCATTGAATTGTATGATGTTGTGCCTACTAACAAACCTGGTTTGATATGAGATTCATACAGGTAATTACTAGTATTCGCGATATCAGTGTTCTTCTGAGGTTATGTTCTGCATGAGAAGATTTAAGGAGCCATTTAATTTCTACGGGTCACAGGTGATTTGAAGTTTATGTATGTACCATGGCTGAAAGAGATTATGCATTAGAAATGTGGAGGCTTCTTGATCTATAAGCACACCTAATTTAAACAAAGTAGCTTCTTCATCATGTTGTTTGTGTCAAATCAGGTAAAAAAACCTAATAATAATCCTATTTTGAAGTGGAAGCTATTGATTCTATACATTTGTGCCTTGGTACACACCTAATTGATAGGAGTCGTAGATTCACTTGTGTTACCTGATGGCTAATACTGACACTGAAACTGAAACCTAACTTGTGAACCTAAAATTTGCAAATTGTTAGGTGTTTTGAAATTTAATATTTTTTAGAGACTGTAGGATTTTTCTTTTAATAGTATGTTAATTGAAAATTATGTATTTTCATTTTATTTGTAGGAAAAGAGAGTAATCTTGTTGTTTTTCTTACATTTCTTTCTTGAGAACTTGAAACCGATGCTTAGGTTGGAGGATTTGGTAGGTTCTAAGAAATCGTTGTTGAATGTTTTCCAATTCGGTTCACATTATCCAAAGAGGGTCATGGTTATTGATGACTGTTCAAAGGTTTTGGAAGACAAAGTGTTAGGCCCTGATCCAGAAGAAAAATGACCTTTGCTGGAAGATTGATTTCAGATAAGTAATGAGAAGTCCTGAGAGAAAGGATGCAAAAAGAGAGTGGGATGACGCAAAGAGAAATGCGTAAACCAAGATTCTATCACGTGAAGGTAGACAACGCGATAAGGGTAACTAGCGAGGAAGGCATTACATTGGGAGCGAAGAGCAAGGCGTTTAGAAGGATACTGCGAGAAGAAGTGCATGCTCCTAAGAGATTGAGATGAGGAAATAAATGTCTTGTCAAGCGACATGACAACTCGAATGTGGGGAAGGAAACAATGGTGACTTTTCAGAAAGAGAAAAAGACAGTCAAACAATTAAGAGTTTGACTTCACAAAGCAATAGGGTGTGTGTCTCAAGGAAAAGTCAAATTGTCATTAACGATTAGGTTACATGTCAAGTTCTGATTGGTAGCATAACATAGTGCATTAATAAGATGACACATGTAAAGCATGGGAGTGACCCTTGAAGGTGAAAGGCAATAGGGTAGAAAACGAAAAGAAAAAGGGAGTTTTCTACAAAAAGAGACTCTAGTTTTCTGATGAAAGTAAGAGGAGAAGATTCTGAATGTTGAACGAATGGTTCCTTCAACCAGTGGACGAAGGAAGAAAGTCAGAAGCCGAGAAGGAAGAAGTTGAGGCTAAGTATCTTCTATGGGTGACAAGATGAACTATATGTTTTATTATGAATGCTACATTGTTTACGCTGTTTCGTTTTACAAGCATTGTTGAAAGTAATAAATGTGATTTACAAGCGTTACCTATGATAAATCTCATTTCATAAATATTTTCTAAAAATAAGCGTGAGATATGGATGTTCTTCAGCAAAAGGTTAAATGTTTTTCATGAATATGAGTTTTCTTCGGAATGTGATAAAGCGTGATTGATAAACGGTTGTGAATGGTTAATCAGATTCTAGTGTGATTTCTAAACTATTGTTATGATCCTGATTATGGAAAAATGATGTTCTATAAACGTTATAAGTTGAGTATTCTTTTCTCTGTGGTTGTATTTATAAGATATTTCACTAATCTATGGTAATCCATGTTGAGGGTAAGCAGTGAGTTATTGTTCCCTTATCGTATTCGCGTGGTTGTGTGAAATGAATCTAGCGTATGGTGTTATAACGCTCGCTGTGTAAAGTCCAAGTAAAACGTTGATGGAATGATGGTTGCATGACTTCCAGATCTGAGAATAAATGAAAGTGGCGGGACGCTGGTGGAAGTCTTAGGTAACTCGCATGATACTGGCCGTGAGAGTGAATCCCAGATTTAGGCGAGGGAAAAATACCCAGGATTCAAAATTATGCTTGTTGTGAAATGATTTCAGCGTATGCTGTTGTAGTGCTCGTGTGATTATTGAACTATTTTAGATCATGATGTGTGTTAACTATTCGATGCGACGTACTTTATCTATTGTGGCTTGATATTATTATCATTTTTTTATTCTATGTATTTTTGCAAAAAGGTTTTCTTAAAATCGTCGCTTGCTAAGTTTGTTGACTTATGTTTTAAGTGTTTCCTCTCCCTAGGTTGTCTAACATTGAGTCCATGTGCATGATGGTTCTGAGGCATTGTAGCCTAGTTAAGGAGGGAAGACAGAGGTACTCCATAGTCTTACAAGGTGCGCTAACCATGACATTTGATCATATGCTTAAGGAGTACGTTGGTAAGCGAATAGCTCCTTAGTGTGGATGACCCGACTCATGAGGAAGGCACATGCAATATCCAGGTTGGTGAGGCCTAACCCAGTGAGTCAGAGAGCCAAAGAGTCGAGTCTAGGGGAAGCTAGCCCTTAACGCAGTTTGCTAAAAGAGGTAGTTGGGCAACTTAGGCAGAGGAGGAAGTCTCATCTTTACACCTCTAGGTACCCGCTACAAGAAGCAGCATTTAGTAGAGAAGAAAGTAAATGAAGACTCTGGTGACTGTCCTTGGGTTGGATTGTAGAAGACAAAAGGGAAAAAGGATGTAAACGAAGTTGATGCCCCTAACCACCGCTACAGAGAGTAGCATTAGGCGGTGGATGAAGGAAGAAATGTGTGTTGCACCTTGGTGGGAAGAAGAAGGATGTGAGAATATCAAAGTTAGGTTTATTTTTACATAAAGCAAAGTTGTCAATTTTAAACTTGTACTTCTGTAAGCAATAAGTTAATAAAGAGAAGGAGTTTCAAGTTA

mRNA sequence

TCCCTTCTCCCTTATGTTCTTTTCTGCCCAAGGGACAAATAGCTCCGACAAAATCGTCCAAGGAAGAACAGGTAATTACTAGTATTCGCGATATCAGTGTTCTTCTGAGGTTATGTTCTGCATGAGAAGATTTAAGGAGCCATTTAATTTCTACGGGTCACAGGTGATTTGAAGTTTATGTATGTACCATGGCTGAAAGAGATTATGCATTAGAAATGTGGAGGCTTCTTGATCTATAAGCACACCTAATTTAAACAAAGTAGCTTCTTCATCATGTTGTTTGTGTCAAATCAGGTTGTCTAACATTGAGTCCATGTGCATGATGGTTCTGAGGCATTGTAGCCTAGTTAAGGAGGGAAGACAGAGGTACTCCATAGTCTTACAAGGTGCGCTAACCATGACATTTGATCATATGCTTAAGGAGTACGTTGGTAAGCGAATAGCTCCTTAGTGTGGATGACCCGACTCATGAGGAAGGCACATGCAATATCCAGGTTGGTGAGGCCTAACCCAGTGAGTCAGAGAGCCAAAGAGTCGAGTCTAGGGGAAGCTAGCCCTTAACGCAGTTTGCTAAAAGAGGTAGTTGGGCAACTTAGGCAGAGGAGGAAGTCTCATCTTTACACCTCTAGGTACCCGCTACAAGAAGCAGCATTTAGTAGAGAAGAAAGTAAATGAAGACTCTGGTGACTGTCCTTGGGTTGGATTGTAGAAGACAAAAGGGAAAAAGGATGTAAACGAAGTTGATGCCCCTAACCACCGCTACAGAGAGTAGCATTAGGCGGTGGATGAAGGAAGAAATGTGTGTTGCACCTTGGTGGGAAGAAGAAGGATGTGAGAATATCAAAGTTAGGTTTATTTTTACATAAAGCAAAGTTGTCAATTTTAAACTTGTACTTCTGTAAGCAATAAGTTAATAAAGAGAAGGAGTTTCAAGTTA

Coding sequence (CDS)

ATGTGCATGATGGTTCTGAGGCATTGTAGCCTAGTTAAGGAGGGAAGACAGAGGTACTCCATAGTCTTACAAGGTGCGCTAACCATGACATTTGATCATATGCTTAAGGAGTACGTTGGTAAGCGAATAGCTCCTTAG

Protein sequence

MCMMVLRHCSLVKEGRQRYSIVLQGALTMTFDHMLKEYVGKRIAP
Homology
[Close]
BLAST of MELO.jh030438.1 vs. NCBI nr
Match: TYK06660.1 (RNA polymerase II C-terminal domain phosphatase-like 2 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 5.34e-12
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 10 SLVKEGRQRYSIVLQGALTMTFDHMLKEYVGKRIAP 45
          +LVKEGRQRYSIVLQGALTMTFDHMLKEYVG+  +P
Sbjct: 26 NLVKEGRQRYSIVLQGALTMTFDHMLKEYVGRGGSP 61

[Close]
BLAST of MELO.jh030438.1 vs. NCBI nr
Match: KAA0066454.1 (ATPase 2, plasma membrane-type-like [Cucumis melo var. makuwa])

HSP 1 Score: 45.8 bits (107), Expect = 2.52e-04
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0 

Query: 11 LVKEGRQRYSIVLQGALTMTFDHMLKEYVGKRIA 44
          LVKEGRQ YS+VL G L MTF +M KE V  +++
Sbjct: 29 LVKEGRQSYSVVLHGVLAMTFHYMFKESVDVKVS 62

[Close]
BLAST of MELO.jh030438.1 vs. NCBI nr
Match: TYJ98388.1 (uncharacterized protein E5676_scaffold232G001350 [Cucumis melo var. makuwa])

HSP 1 Score: 45.8 bits (107), Expect = 7.73e-04
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0 

Query: 11  LVKEGRQRYSIVLQGALTMTFDHMLKEYVGKRIA 44
           LVKEGRQ YS+VL G L MTF +M KE V  +++
Sbjct: 244 LVKEGRQSYSVVLHGVLAMTFHYMFKESVDVKVS 277

[Close]
BLAST of MELO.jh030438.1 vs. ExPASy TrEMBL
Match: A0A5D3C5Q0 (RNA polymerase II C-terminal domain phosphatase-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001420 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.58e-12
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 10 SLVKEGRQRYSIVLQGALTMTFDHMLKEYVGKRIAP 45
          +LVKEGRQRYSIVLQGALTMTFDHMLKEYVG+  +P
Sbjct: 26 NLVKEGRQRYSIVLQGALTMTFDHMLKEYVGRGGSP 61

[Close]
BLAST of MELO.jh030438.1 vs. ExPASy TrEMBL
Match: A0A5A7VGL7 (ATPase 2, plasma membrane-type-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005520 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.22e-04
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0 

Query: 11 LVKEGRQRYSIVLQGALTMTFDHMLKEYVGKRIA 44
          LVKEGRQ YS+VL G L MTF +M KE V  +++
Sbjct: 29 LVKEGRQSYSVVLHGVLAMTFHYMFKESVDVKVS 62

[Close]
BLAST of MELO.jh030438.1 vs. ExPASy TrEMBL
Match: A0A5D3BJL0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001350 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.74e-04
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 0 

Query: 11  LVKEGRQRYSIVLQGALTMTFDHMLKEYVGKRIA 44
           LVKEGRQ YS+VL G L MTF +M KE V  +++
Sbjct: 244 LVKEGRQSYSVVLHGVLAMTFHYMFKESVDVKVS 277

The following BLAST results are available for this feature:
BLAST of MELO.jh030438.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK06660.15.34e-1286.11RNA polymerase II C-terminal domain phosphatase-like 2 [Cucumis melo var. makuwa... [more]
KAA0066454.12.52e-0458.82ATPase 2, plasma membrane-type-like [Cucumis melo var. makuwa][more]
TYJ98388.17.73e-0458.82uncharacterized protein E5676_scaffold232G001350 [Cucumis melo var. makuwa][more]
BLAST of MELO.jh030438.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh030438.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C5Q02.58e-1286.11RNA polymerase II C-terminal domain phosphatase-like 2 OS=Cucumis melo var. maku... [more]
A0A5A7VGL71.22e-0458.82ATPase 2, plasma membrane-type-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3BJL03.74e-0458.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO.jh030438.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh030438.1.t1MELO.jh030438.1.t1mRNA