MELO.jh030330.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh030330.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRab-GAP TBC domain-containing protein
Locationchr02: 9873210 .. 9873459 (-)
RNA-Seq ExpressionMELO.jh030330.1
SyntenyMELO.jh030330.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTGATAGGAATGTTGGATATGTTCAGGTATGAATCTTCTTTTTGCATCAATCATATGTATATTAACAATTGTATTTGGTAGTGAATGGTATGTAATACTTTTAAGTGTGTAGGGGATGAGATTTTTAACTGATTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGTTGTTGGCCGAATTACTCAAAGGTGAAGTTCATGCTCCAATGGAAGGATTATATATGGTAACTCTATTCTTTTAG

mRNA sequence

TTTTTGATAGGAATGTTGGATATGTTCAGGGGATGAGATTTTTAACTGATTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGTTGTTGGCCGAATTACTCAAAGGTGAAGTTCATGCTCCAATGGAAGGATTATATATGGTAACTCTATTCTTTTAG

Coding sequence (CDS)

ATGAGATTTTTAACTGATTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGTTGTTGGCCGAATTACTCAAAGGTGAAGTTCATGCTCCAATGGAAGGATTATATATGGTAACTCTATTCTTTTAG

Protein sequence

MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTLFF
Homology
BLAST of MELO.jh030330.1 vs. NCBI nr
Match: KAA0038217.1 (DNA repair protein recA-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 4.81e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYM 38
          MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYM
Sbjct: 45 MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYM 82

BLAST of MELO.jh030330.1 vs. NCBI nr
Match: XP_016901610.1 (PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cucumis melo] >XP_016901611.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cucumis melo] >XP_016901612.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cucumis melo] >XP_016901613.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cucumis melo] >XP_016901614.1 PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 8.90e-12
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 1  MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYM 38
          M FL DLLLLYMSEEDAFWLL ELLKG VHAPME LY+
Sbjct: 20 MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 57

BLAST of MELO.jh030330.1 vs. NCBI nr
Match: MCI12859.1 (Ypt/Rab-GAP domain of gyp1p superfamily protein [Trifolium medium])

HSP 1 Score: 64.7 bits (156), Expect = 1.07e-11
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 0

Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTLFF 43
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+  L++
Sbjct: 74  MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLDCLWY 116

BLAST of MELO.jh030330.1 vs. NCBI nr
Match: MBA0583217.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 66.6 bits (161), Expect = 1.15e-11
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTLF 42
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY V L+
Sbjct: 168 MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYQVLLY 209

BLAST of MELO.jh030330.1 vs. NCBI nr
Match: KAG0577573.1 (hypothetical protein KC19_5G165400 [Ceratodon purpureus])

HSP 1 Score: 66.2 bits (160), Expect = 1.20e-11
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 41
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+V L
Sbjct: 93  MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLVGL 133

BLAST of MELO.jh030330.1 vs. ExPASy TrEMBL
Match: A0A5A7T9C6 (DNA repair protein recA-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00550 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.33e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYM 38
          MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYM
Sbjct: 45 MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYM 82

BLAST of MELO.jh030330.1 vs. ExPASy TrEMBL
Match: M0U1F1 (Rab-GAP TBC domain-containing protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.58e-13
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTLF 42
           M FL  LLLLYMSEEDAFWLL  LLKG +HAPMEGLY VT F
Sbjct: 114 MGFLAGLLLLYMSEEDAFWLLVALLKGAIHAPMEGLYQVTAF 155

BLAST of MELO.jh030330.1 vs. ExPASy TrEMBL
Match: A0A5K1BMN2 (Rab-GAP TBC domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS14802 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.32e-12
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0

Query: 1  MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYM 38
          M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+
Sbjct: 2  MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYL 39

BLAST of MELO.jh030330.1 vs. ExPASy TrEMBL
Match: A0A1S4E059 (DNA repair protein recA homolog 1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495083 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.31e-12
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 0

Query: 1  MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYM 38
          M FL DLLLLYMSEEDAFWLL ELLKG VHAPME LY+
Sbjct: 20 MGFLADLLLLYMSEEDAFWLLVELLKGAVHAPMEELYL 57

BLAST of MELO.jh030330.1 vs. ExPASy TrEMBL
Match: A0A392PMZ6 (Ypt/Rab-GAP domain of gyp1p superfamily protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.18e-12
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 0

Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTLFF 43
           M FL  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY+  L++
Sbjct: 74  MGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLDCLWY 116

BLAST of MELO.jh030330.1 vs. TAIR 10
Match: AT3G02460.1 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-10
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLY 38
           M F+  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY
Sbjct: 175 MGFIAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLY 211

BLAST of MELO.jh030330.1 vs. TAIR 10
Match: AT3G02460.2 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-10
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLY 38
           M F+  LLLLYMSEEDAFWLL  LLKG VHAPMEGLY
Sbjct: 175 MGFIAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLY 211

BLAST of MELO.jh030330.1 vs. TAIR 10
Match: AT5G15930.1 (plant adhesion molecule 1 )

HSP 1 Score: 59.7 bits (143), Expect = 6.7e-10
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0

Query: 1   MRFLTDLLLLYMSEEDAFWLLAELLKGEVHAPMEGLYMVTL 42
           M F+  LLLLYMSEEDAFWLL  LLKG VH+P+EGLY   L
Sbjct: 172 MGFIAGLLLLYMSEEDAFWLLVALLKGAVHSPIEGLYQAGL 212

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0038217.14.81e-17100.00DNA repair protein recA-like protein 1 [Cucumis melo var. makuwa][more]
XP_016901610.18.90e-1284.21PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like isoform X1 [Cuc... [more]
MCI12859.11.07e-1174.42Ypt/Rab-GAP domain of gyp1p superfamily protein [Trifolium medium][more]
MBA0583217.11.15e-1178.57hypothetical protein [Gossypium raimondii][more]
KAG0577573.11.20e-1180.49hypothetical protein KC19_5G165400 [Ceratodon purpureus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T9C62.33e-17100.00DNA repair protein recA-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
M0U1F17.58e-1378.57Rab-GAP TBC domain-containing protein OS=Musa acuminata subsp. malaccensis OX=21... [more]
A0A5K1BMN21.32e-1281.58Rab-GAP TBC domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 ... [more]
A0A1S4E0594.31e-1284.21DNA repair protein recA homolog 1, chloroplastic-like isoform X1 OS=Cucumis melo... [more]
A0A392PMZ65.18e-1274.42Ypt/Rab-GAP domain of gyp1p superfamily protein (Fragment) OS=Trifolium medium O... [more]
Match NameE-valueIdentityDescription
AT3G02460.11.3e-1081.08Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
AT3G02460.21.3e-1081.08Ypt/Rab-GAP domain of gyp1p superfamily protein [more]
AT5G15930.16.7e-1070.73plant adhesion molecule 1 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.270putative rabgap domain of human tbc1 domain family member 14 like domainscoord: 1..33
e-value: 4.0E-5
score: 25.6
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh030330.1.t1MELO.jh030330.1.t1mRNA