MELO.jh030188.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh030188.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr01: 29520635 .. 29520786 (+)
RNA-Seq ExpressionMELO.jh030188.1
SyntenyMELO.jh030188.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCCAGATCCATTGAGGCGGTTTGATAGAAGAAAGTGCAAGCTTGGACACATAGTGCATAGCCTTGAGACGAATCTATTTCGAGTTTACTCTCTGAAGAAGAACAAAGAAAGCAAAGCAATTACCTATGGACCCGGCTAAAGAGGCAG

mRNA sequence

ATGAACCCAGATCCATTGAGGCGGTTTGATAGAAGAAAGTGCAAGCTTGGACACATAGTGCATAGCCTTGAGACGAATCTATTTCGAGTTTACTCTCTGAAGAAGAACAAAGAAAGCAAAGCAATTACCTATGGACCCGGCTAAAGAGGCAG

Coding sequence (CDS)

ATGAACCCAGATCCATTGAGGCGGTTTGATAGAAGAAAGTGCAAGCTTGGACACATAGTGCATAGCCTTGAGACGAATCTATTTCGAGTTTACTCTCTGAAGAAGAACAAAGAAAGCAAAGCAATTACCTATGGACCCGGCTAA

Protein sequence

MNPDPLRRFDRRKCKLGHIVHSLETNLFRVYSLKKNKESKAITYGPG
Homology
[Close]
BLAST of MELO.jh030188.1 vs. NCBI nr
Match: KAA0068014.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 3.09e-09
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 2   NPDPLRRFDRRKCKLGHIVHSLETNLFRVYSLKKNKESKA 41
           +PDPLRRFDRRK KLGHIVH+LETN FRVYS ++ +  ++
Sbjct: 908 SPDPLRRFDRRKRKLGHIVHNLETNPFRVYSSEEEQRKQS 947

[Close]
BLAST of MELO.jh030188.1 vs. ExPASy TrEMBL
Match: A0A5A7VKR7 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002070 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.50e-09
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 0 

Query: 2   NPDPLRRFDRRKCKLGHIVHSLETNLFRVYSLKKNKESKA 41
           +PDPLRRFDRRK KLGHIVH+LETN FRVYS ++ +  ++
Sbjct: 908 SPDPLRRFDRRKRKLGHIVHNLETNPFRVYSSEEEQRKQS 947

The following BLAST results are available for this feature:
BLAST of MELO.jh030188.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0068014.13.09e-0967.50putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
BLAST of MELO.jh030188.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh030188.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VKR71.50e-0967.50Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
BLAST of MELO.jh030188.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh030188.1.t1MELO.jh030188.1.t1mRNA