MELO.jh030161.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh030161.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr01: 25394973 .. 25395166 (-)
RNA-Seq ExpressionMELO.jh030161.1
SyntenyMELO.jh030161.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGAAACTGTTGACATCATTCGTAATGCAATGGACTTTGCAAATGACCAGTTGAAGGTCATTCCAAAATGTTCGAACACACAACGTCAAGTAGAGGATGAGTACATTACAGAATGCGTGAACCAGTTGCAAGATATCCTTGAACTGAGTAGTCGCATAGAGTATGGATTATACGGATCATAACACGCAGTTGA

mRNA sequence

GCTGAAACTGTTGACATCATTCGTAATGCAATGGACTTTGCAAATGACCAGTTGAAGGTCATTCCAAAATGTTCGAACACACAACGTCAAGTAGAGGATGAGTACATTACAGAATGCGTGAACCAGTTGCAAGATATCCTTGAACTGAGTAGTCGCATAGAGTATGGATTATACGGATCATAACACGCAGTTGA

Coding sequence (CDS)

ATGGACTTTGCAAATGACCAGTTGAAGGTCATTCCAAAATGTTCGAACACACAACGTCAAGTAGAGGATGAGTACATTACAGAATGCGTGAACCAGTTGCAAGATATCCTTGAACTGAGTAGTCGCATAGAGTATGGATTATACGGATCATAA

Protein sequence

MDFANDQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSRIEYGLYGS
Homology
BLAST of MELO.jh030161.1 vs. NCBI nr
Match: KAA0026215.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK30741.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 3.29e-23
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 1   MDFANDQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSRIEYGLYGS 50
           +D + DQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSRIEYGLYGS
Sbjct: 178 LDMSLDQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSRIEYGLYGS 227

BLAST of MELO.jh030161.1 vs. NCBI nr
Match: KAA0037008.1 (subtilisin-like protease SBT3.17 isoform X1 [Cucumis melo var. makuwa] >TYK06643.1 subtilisin-like protease SBT3.17 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 1.35e-05
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 1   MDFANDQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSR 42
           M+F N+QLK I +    QRQ EDEY  E V QLQDI ELSSR
Sbjct: 115 MEFMNNQLKTIAERPKKQRQAEDEYRAEVVKQLQDIPELSSR 156

BLAST of MELO.jh030161.1 vs. NCBI nr
Match: KAA0059863.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 4.26e-05
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 1  MDFANDQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSR 42
          M+F ND+LK I +    QRQ ED+Y  + V QLQDI EL+SR
Sbjct: 12 MEFVNDELKTITEWPKEQRQAEDKYGVQYVKQLQDIPELNSR 53

BLAST of MELO.jh030161.1 vs. ExPASy TrEMBL
Match: A0A5D3E574 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00770 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.59e-23
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 1   MDFANDQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSRIEYGLYGS 50
           +D + DQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSRIEYGLYGS
Sbjct: 178 LDMSLDQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSRIEYGLYGS 227

BLAST of MELO.jh030161.1 vs. ExPASy TrEMBL
Match: A0A5A7T2J7 (Subtilisin-like protease SBT3.17 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001210 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.54e-06
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 1   MDFANDQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSR 42
           M+F N+QLK I +    QRQ EDEY  E V QLQDI ELSSR
Sbjct: 115 MEFMNNQLKTIAERPKKQRQAEDEYRAEVVKQLQDIPELSSR 156

BLAST of MELO.jh030161.1 vs. ExPASy TrEMBL
Match: A0A5A7UV97 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold108G001490 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.06e-05
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 1  MDFANDQLKVIPKCSNTQRQVEDEYITECVNQLQDILELSSR 42
          M+F ND+LK I +    QRQ ED+Y  + V QLQDI EL+SR
Sbjct: 12 MEFVNDELKTITEWPKEQRQAEDKYGVQYVKQLQDIPELNSR 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0026215.13.29e-2392.00retrotransposon protein [Cucumis melo var. makuwa] >TYK30741.1 retrotransposon p... [more]
KAA0037008.11.35e-0561.90subtilisin-like protease SBT3.17 isoform X1 [Cucumis melo var. makuwa] >TYK06643... [more]
KAA0059863.14.26e-0554.76retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E5741.59e-2392.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T2J76.54e-0661.90Subtilisin-like protease SBT3.17 isoform X1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7UV972.06e-0554.76Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh030161.1.t1MELO.jh030161.1.t1mRNA