MELO.jh028034.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh028034.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionNADH-ubiquinone oxidoreductase chain 2
Locationscaffold_mitochondria: 1038536 .. 1039985 (-)
RNA-Seq ExpressionMELO.jh028034.1
SyntenyMELO.jh028034.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGTTGCCACGAGTCAGTCTGTTTGGGAGACCGAAGGCAGTTCTCCGTGCACCGGACACGTAGCTTACCTTTTCAGTTGCGAGACGGATGGGAATGCATGCTCCGAAAGATAGGGTCGAGTCTGATACATCAACCGTCTACTCAATATCCTTGTACGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGGTGAATTGAAGTTGGCCCCACGGAGCGGTGTAATAGGACTCCCAGTTACTGCGCGCGATCGTATACTGAGGTGCTCCCCGCCGGTTGTTGGAACGACGCGAGCCGGGCCTCGATTCAGAAAGATTCAGGGCCAAAAAGTCTCAATAGGGGGTTACTAATTCCCCATCTCATTGGGGGCGGAAAACGAATCGACATCTCGATGTGAGACAGCCTTTGAAATTGGAGTTGGGAAAGAACGGCGAAGTCCATCCGAACCGTCCAATGAAGAATAAGAGGAGAACAAAGGGCCAATGGCGCGCGAAGCGCATGGCGGGAACGGACACGGATCCAAATCAGTGTGGAGAAGAACTCATCTGGAGCTTGATTTTCTCCCCCTGGGCCCAAAGCAGTGCAGTCTTTCCTGGCCAAATCAAGGATTTTTGGGGCTTCACGCAACTTCATCAATCCATTTTTTGAGTCAGATATATGAATATCAAGATGGATGAATCTAGATCTTTCTCTTTTGATATCTAAAAAAGATTGAATTCAACCTTTGATTCAAAGAACTGCGCTTAGCCCCCCCGCTCATGAAAGGGCTCCGCTGCAATGGATGACAGAGGGTCCGTAGTACCCAAAGCACTGGAGTGATCCTGTAGCCGGGAAGGGGCCTAGAAGTGCCTACTACTACACCACACTAGACTTGGCTCTACACATTTAGAAAGCTAAACCCTGCCCAGTCCCTGGCAGAGCTAAGGGGGCTTCAATCCTTATTCCTTATCCCCATCTTCGCCCATGCTAACGGGGCCTTACGGGGAGAGTGGAGCCTCAAGAAGCACTGTTGAGAGGTCTCGACTGAAAGGAGAGAGAAGCTTGCTTTTTTTTTTAGTACTCTTCATTCTCTACAGGGTTCCAAACCTTTCTTCAACATAGGTGAGAACGAGCGAGGCAGAGATGGAAGAGATCGAAGACGGGAATAAGAAGCAAGCTCGCCTTTTTTTGTCTTTTTCGTTAGGGCAGTCGAAAAGTGCCTTTTTCGTCTCGCATTTCTCATCAAACAAAGACGGAAAAATCATCATATTTCAAAGGTTCCTAACCCACCAAGCCCTTCCTTCGTAGAGCCGTGTATTGTCAGTGATCCGAACCTGCCCGGAGCGAGCCTCCCATAGAGGCAAGTTCAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGGTTCGGAGAGGACTCAGCTCTGAGTTAGTACCCCCTTGGTTTCGGGGTGGACCCTTTCACTCTAT

mRNA sequence

AGGTTGCCACGAGTCAGTCTGTTTGGGAGACCGAAGGCAGTTCTCCGTGCACCGGACACGTAGCTTACCTTTTCAGTTGCGAGACGGATGGGAATGCATGCTCCGAAAGATAGGGTCGAGTCTGATACATCAACCGTCTACTCAATATCCTTGTACGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGGTGAATTGAAGTTGGCCCCACGGAGCGGTGTAATAGGACTCCCAGTTACTGCGCGCGATCGTATACTGAGGTGCTCCCCGCCGGTTGTTGGAACGACGCGAGCCGGGCCTCGATTCAGAAAGATTCAGGGCCAAAAAGTCTCAATAGGGGGTTACTAATTCCCCATCTCATTGGGGGCGGAAAACGAATCGACATCTCGATGTGAGACAGCCTTTGAAATTGGAGTTGGGAAAGAACGGCGAAGTCCATCCGAACCGTCCAATGAAGAATAAGAGGAGAACAAAGGGCCAATGGCGCGCGAAGCGCATGGCGGGAACGGACACGGATCCAAATCAGTGTGGAGAAGAACTCATCTGGAGCTTGATTTTCTCCCCCTGGGCCCAAAGCAGTGCAGTCTTTCCTGGCCAAATCAAGGATTTTTGGGGCTTCACGCAACTTCATCAATCCATTTTTTGAGTCAGATATATGAATATCAAGATGGATGAATCTAGATCTTTCTCTTTTGATATCTAAAAAAGATTGAATTCAACCTTTGATTCAAAGAACTGCGCTTAGCCCCCCCGCTCATGAAAGGGCTCCGCTGCAATGGATGACAGAGGGTCCGTAGTACCCAAAGCACTGGAGTGATCCTGTAGCCGGGAAGGGGCCTAGAAGTGCCTACTACTACACCACACTAGACTTGGCTCTACACATTTAGAAAGCTAAACCCTGCCCAGTCCCTGGCAGAGCTAAGGGGGCTTCAATCCTTATTCCTTATCCCCATCTTCGCCCATGCTAACGGGGCCTTACGGGGAGAGTGGAGCCTCAAGAAGCACTGTTGAGAGGTCTCGACTGAAAGGAGAGAGAAGCTTGCTTTTTTTTTTAGTACTCTTCATTCTCTACAGGGTTCCAAACCTTTCTTCAACATAGGTGAGAACGAGCGAGGCAGAGATGGAAGAGATCGAAGACGGGAATAAGAAGCAAGCTCGCCTTTTTTTGTCTTTTTCGTTAGGGCAGTCGAAAAGTGCCTTTTTCGTCTCGCATTTCTCATCAAACAAAGACGGAAAAATCATCATATTTCAAAGGTTCCTAACCCACCAAGCCCTTCCTTCGTAGAGCCGTGTATTGTCAGTGATCCGAACCTGCCCGGAGCGAGCCTCCCATAGAGGCAAGTTCAGTTGGTGAGCCGTATGATGGGCAACTATCTCCTGCGGTTCGGAGAGGACTCAGCTCTGAGTTAGTACCCCCTTGGTTTCGGGGTGGACCCTTTCACTCTAT

Coding sequence (CDS)

ATGGGAATGCATGCTCCGAAAGATAGGGTCGAGTCTGATACATCAACCGTCTACTCAATATCCTTGTACGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGGTGAATTGAAGTTGGCCCCACGGAGCGGTGTAATAGGACTCCCAGTTACTGCGCGCGATCGTATACTGAGGTGCTCCCCGCCGGTTGTTGGAACGACGCGAGCCGGGCCTCGATTCAGAAAGATTCAGGGCCAAAAAGTCTCAATAGGGGGTTACTAA

Protein sequence

MGMHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRCSPPVVGTTRAGPRFRKIQGQKVSIGGY
Homology
[Close]
BLAST of MELO.jh028034.1 vs. NCBI nr
Match: KAA0043458.1 (NADH-ubiquinone oxidoreductase chain 2 [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 1.71e-49
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3  MHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRCSP 62
          MHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRCSP
Sbjct: 1  MHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRCSP 60

Query: 63 PVVGTTRAGPRFRKIQGQK 81
          PVVGTTRAGPRFRKIQGQK
Sbjct: 61 PVVGTTRAGPRFRKIQGQK 79

[Close]
BLAST of MELO.jh028034.1 vs. NCBI nr
Match: KAG9157566.1 (hypothetical protein Leryth_022773 [Lithospermum erythrorhizon])

HSP 1 Score: 143 bits (361), Expect = 4.10e-42
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1  MGMHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRC 60
          MGMHA KDRVESDTSTVYSISLYESTITTRDEPWFGELKLA   GVIGLPVTARDRIL+C
Sbjct: 1  MGMHATKDRVESDTSTVYSISLYESTITTRDEPWFGELKLA--LGVIGLPVTARDRILKC 60

Query: 61 SPPVVGTTRAG-PRFRKIQGQKVSIG 85
          SPPVVGTT+AG  RFRK++GQK+ IG
Sbjct: 61 SPPVVGTTQAGGSRFRKMKGQKLQIG 84

[Close]
BLAST of MELO.jh028034.1 vs. NCBI nr
Match: QHN95483.1 (NADH-ubiquinone oxidoreductase chain [Arachis hypogaea])

HSP 1 Score: 140 bits (354), Expect = 2.76e-41
Identity = 71/79 (89.87%), Postives = 73/79 (92.41%), Query Frame = 0 

Query: 1  MGMHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRC 60
          MGMHA KDRVESDTSTVYSISLYESTITTRDEPWFGELKLA   GV GLPVTARDRILRC
Sbjct: 1  MGMHATKDRVESDTSTVYSISLYESTITTRDEPWFGELKLA--LGVKGLPVTARDRILRC 60

Query: 61 SPPVVGTTRAGPRFRKIQG 79
          SPPVVGTTRAGP FRK++G
Sbjct: 61 SPPVVGTTRAGPPFRKMKG 77

[Close]
BLAST of MELO.jh028034.1 vs. NCBI nr
Match: QHN82242.1 (NADH-ubiquinone oxidoreductase chain [Arachis hypogaea])

HSP 1 Score: 140 bits (354), Expect = 7.51e-40
Identity = 71/79 (89.87%), Postives = 73/79 (92.41%), Query Frame = 0 

Query: 1   MGMHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRC 60
           MGMHA KDRVESDTSTVYSISLYESTITTRDEPWFGELKLA   GV GLPVTARDRILRC
Sbjct: 112 MGMHATKDRVESDTSTVYSISLYESTITTRDEPWFGELKLA--LGVKGLPVTARDRILRC 171

Query: 61  SPPVVGTTRAGPRFRKIQG 79
           SPPVVGTTRAGP FRK++G
Sbjct: 172 SPPVVGTTRAGPPFRKMKG 188

[Close]
BLAST of MELO.jh028034.1 vs. NCBI nr
Match: TMW80990.1 (hypothetical protein EJD97_012948 [Solanum chilense] >TMW80992.1 hypothetical protein EJD97_012950 [Solanum chilense])

HSP 1 Score: 133 bits (335), Expect = 1.01e-38
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 0 

Query: 1  MGMHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRC 60
          MGMHA KDRVESDTSTVYSISLYEST+TTRDEPWFGELKLA   GVIGLPVTARDRILRC
Sbjct: 1  MGMHATKDRVESDTSTVYSISLYESTMTTRDEPWFGELKLA--LGVIGLPVTARDRILRC 60

Query: 61 SPPVVGTTRAGP 72
          SPPVVGTTRAGP
Sbjct: 61 SPPVVGTTRAGP 70

[Close]
BLAST of MELO.jh028034.1 vs. ExPASy Swiss-Prot
Match: P15688 (NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris OX=161934 GN=ND2 PE=3 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 7.5e-21
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 16  TVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRCSPPVVGTTRAGP 73
           +VYSISLYESTITTRDEPWFGE +LA   GVIGLPVTA DRILRCSPPVVGTTRAGP
Sbjct: 455 SVYSISLYESTITTRDEPWFGEFELA--LGVIGLPVTAHDRILRCSPPVVGTTRAGP 509

[Close]
BLAST of MELO.jh028034.1 vs. ExPASy TrEMBL
Match: A0A5A7TKW3 (NADH-ubiquinone oxidoreductase chain 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold49520G00050 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 8.28e-50
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3  MHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRCSP 62
          MHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRCSP
Sbjct: 1  MHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRCSP 60

Query: 63 PVVGTTRAGPRFRKIQGQK 81
          PVVGTTRAGPRFRKIQGQK
Sbjct: 61 PVVGTTRAGPRFRKIQGQK 79

[Close]
BLAST of MELO.jh028034.1 vs. ExPASy TrEMBL
Match: A0A6N2AH75 (Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_012948 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 4.89e-39
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 0 

Query: 1  MGMHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRC 60
          MGMHA KDRVESDTSTVYSISLYEST+TTRDEPWFGELKLA   GVIGLPVTARDRILRC
Sbjct: 1  MGMHATKDRVESDTSTVYSISLYESTMTTRDEPWFGELKLA--LGVIGLPVTARDRILRC 60

Query: 61 SPPVVGTTRAGP 72
          SPPVVGTTRAGP
Sbjct: 61 SPPVVGTTRAGP 70

[Close]
BLAST of MELO.jh028034.1 vs. ExPASy TrEMBL
Match: M1BVN5 (NADH-ubiquinone oxidoreductase chain 2 OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 4.89e-39
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 0 

Query: 1  MGMHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRC 60
          MGMHA KDRVESDTSTVYSISLYEST+TTRDEPWFGELKLA   GVIGLPVTARDRILRC
Sbjct: 1  MGMHATKDRVESDTSTVYSISLYESTMTTRDEPWFGELKLA--LGVIGLPVTARDRILRC 60

Query: 61 SPPVVGTTRAGP 72
          SPPVVGTTRAGP
Sbjct: 61 SPPVVGTTRAGP 70

[Close]
BLAST of MELO.jh028034.1 vs. ExPASy TrEMBL
Match: A0A2I0HZ70 (Proton_antipo_M domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_042610 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 6.95e-39
Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 0 

Query: 1   MGMHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRC 60
           MGMHA KDRVESDTSTVYSISL ES ITTRDEPWFGELKLA   G +GLPVTARDRILRC
Sbjct: 207 MGMHATKDRVESDTSTVYSISLDESIITTRDEPWFGELKLA--LGGLGLPVTARDRILRC 266

Query: 61  SPPVVGTTRAGPRFRKIQGQKV 82
           SPPVVGTTRAGPRFRK++G KV
Sbjct: 267 SPPVVGTTRAGPRFRKMKGPKV 286

[Close]
BLAST of MELO.jh028034.1 vs. ExPASy TrEMBL
Match: A0A200Q467 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_6935g6 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 6.95e-39
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 0 

Query: 1  MGMHAPKDRVESDTSTVYSISLYESTITTRDEPWFGELKLAPRSGVIGLPVTARDRILRC 60
          MGMHA K+RVESDTSTVYSISLYESTITTRDEPWFGELKLA   GVIGLPVTARDRILRC
Sbjct: 1  MGMHATKERVESDTSTVYSISLYESTITTRDEPWFGELKLA--LGVIGLPVTARDRILRC 60

Query: 61 SPPVVGTTRAGP 72
          SPPVVGTTRAGP
Sbjct: 61 SPPVVGTTRAGP 70

The following BLAST results are available for this feature:
BLAST of MELO.jh028034.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043458.11.71e-49100.00NADH-ubiquinone oxidoreductase chain 2 [Cucumis melo var. makuwa][more]
KAG9157566.14.10e-4286.05hypothetical protein Leryth_022773 [Lithospermum erythrorhizon][more]
QHN95483.12.76e-4189.87NADH-ubiquinone oxidoreductase chain [Arachis hypogaea][more]
QHN82242.17.51e-4089.87NADH-ubiquinone oxidoreductase chain [Arachis hypogaea][more]
TMW80990.11.01e-3893.06hypothetical protein EJD97_012948 [Solanum chilense] >TMW80992.1 hypothetical pr... [more]
BLAST of MELO.jh028034.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P156887.5e-2187.72NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris OX=161934 GN=ND2 PE=3 SV... [more]
BLAST of MELO.jh028034.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TKW38.28e-50100.00NADH-ubiquinone oxidoreductase chain 2 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6N2AH754.89e-3993.06Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_012948 PE=4 SV=1[more]
M1BVN54.89e-3993.06NADH-ubiquinone oxidoreductase chain 2 OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
A0A2I0HZ706.95e-3986.59Proton_antipo_M domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_0... [more]
A0A200Q4676.95e-3993.06Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_6935g6 PE=4 SV=1[more]
BLAST of MELO.jh028034.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh028034.1.t1MELO.jh028034.1.t1mRNA