MELO.jh026965.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh026965.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	PMD domain-containing protein
Location	chr12: 21024996 .. 21026234 (+)
RNA-Seq Expression	MELO.jh026965.1
Synteny	MELO.jh026965.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTACTTCACAGAATGATTCTTGTCTGGAGTCCGACACCTCGTAATACTTTATGATAGAAATCAATCAAGAGAAGATGGACTTAGTCTCCTTGTGGAAAAGCCATAGGCTGGTCATTTTACAGATCATTGGCCACGCTTAGACCACAACTTAATTCTTCCTAGATTATTTGTGGAGATACCTTTGTTTGAGGAAAAAAACGCATGGGTCTTAAGTCTTTTATCCATAACGAGGCTCCTAATTCCGATAGAGCTCTCACTCTCAGACAATGTTTAATTGAAGGTCAAACACATTGGGGTGCTGTGACCAAGGTCCCTGGAGAGTTCTGTTTTACTGACTGCTATTGGGAGTGGCTAGAGCTTGTAGTTGGTCGAAATGTGTGACTTCTTTACATTGCTCGTTTATATAGCGTCGAAACTTCTTTGTACACTTATGATCGTAATAGTGATGTTGTTCGAGTATTTTGTGAAGCTTGGTGTCCTTCGACTAATACTCTTCATACTATGGCGAGCGAGTTATTCATTTCTTTGTGGGACCTATGGTCCTTTGAGGGTCTTAGGGAGATTTCTACGAAAAGAGATCCTCTTGCTTTAAAGAATTAATCTCCTTGTGAGACAAGACGAAGTGCCTTCCGACGACCTGTCAATATCTTTTTCAGGCGTATTATTCAATAGTTTGTACATAAAGGAATGATCGCTCGACATCTTTCAAGAATGACTCCCAAGTGACTATTAGCTCATGGATTTCGTTCTGGTACATTGGGTCTAAAAGCTATGATCAGCCAACCACACGGAAGCAAAAGAAGGCGTTGGGCTTCAAATCTACTCAAAATCCTGATGGTTCGAAGATCCAGGCTCAAGAATGGTCCTCTAGGGAGAACATGATATTTGCAGAACTTGGAATCAGGGGCGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGTTGGTGGTCTCTCTTCGTATTTCCACATAAAGTATCATTTTTACGCCCCGGAGTATTTAAAACTGCAAGCTTAATGGCTATTGGCATTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATATCATAAGCTAAGTTTGATAACCAAAGCCTTCAATTCGATAGGATGCATGGACTTTCACTTTCCCATGTATTACGTCCATGGTTGGTTAACCCATTATTTTGGCATGCATTATCCACTTCCCACAGAAGTTCGAGGTTCTAAGATGGTTAACTTTTTCGA

mRNA sequence

ATGGTTTACTTCACAGAATGATTCTTGTCTGGAGTCCGACACCTCGTAATACTTTATGATAGAAATCAATCAAGAGAAGATGGACTTAGTCTCCTTGTGGAAAAGCCATAGGCTGGTCATTTTACAGATCATTGGCCACGCTTAGACCACAACTTAATTCTTCCTAGATTATTTGTGGAGATACCTTTGTTTGAGGAAAAAAACGCATGGGTCTTAAGTCTTTTATCCATAACGAGGCTCCTAATTCCGATAGAGCTCTCACTCTCAGACAATGTTTAATTGAAGGTCAAACACATTGGGGTGCTGTGACCAAGGTCCCTGGAGAGTTCTGTTTTACTGACTGCTATTGGGAGTGGCTAGAGCTTGTAGTTGGTCGAAATGTGTGACTTCTTTACATTGCTCGTTTATATAGCGTCGAAACTTCTTTGTACACTTATGATCGTAATAGTGATGTTGTTCGAGTATTTTGTGAAGCTTGGTGTCCTTCGACTAATACTCTTCATACTATGGCGAGCGAGTTATTCATTTCTTTGTGGGACCTATGGTCCTTTGAGGGTCTTAGGGAGATTTCTACGAAAAGAGATCCTCTTGCTTTAAAGAATTAATCTCCTTGTGAGACAAGACGAAGTGCCTTCCGACGACCTGTCAATATCTTTTTCAGGCGTATTATTCAATAGTTTGTACATAAAGGAATGATCGCTCGACATCTTTCAAGAATGACTCCCAAGTGACTATTAGCTCATGGATTTCGTTCTGGTACATTGGGTCTAAAAGCTATGATCAGCCAACCACACGGAAGCAAAAGAAGGCGTTGGGCTTCAAATCTACTCAAAATCCTGATGGTTCGAAGATCCAGGCTCAAGAATGGTCCTCTAGGGAGAACATGATATTTGCAGAACTTGGAATCAGGGGCGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGTTGGTGGTCTCTCTTCGTATTTCCACATAAAGTATCATTTTTACGCCCCGGAGTATTTAAAACTGCAAGCTTAATGGCTATTGGCATTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATATCATAAGCTAAGTTTGATAACCAAAGCCTTCAATTCGATAGGATGCATGGACTTTCACTTTCCCATGTATTACGTCCATGGTTGGTTCTAAGATGGTTAACTTTTTCGA

Coding sequence (CDS)

ATGATATTTGCAGAACTTGGAATCAGGGGCGATTTGAAGGATGAAACGTATTTAGCTGCCTTCTTATCTTGTTGGTGGTCTCTCTTCGTATTTCCACATAAAGTATCATTTTTACGCCCCGGAGTATTTAAAACTGCAAGCTTAATGGCTATTGGCATTATTTATAGTCTTGCAGTTCCAGTTTTGGCGAACATATATCATAAGCTAAGTTTGATAACCAAAGCCTTCAATTCGATAGGATGCATGGACTTTCACTTTCCCATGTATTACGTCCATGGTTGGTTCTAA

Protein sequence

MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVPVLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGWF

Homology

[Close]

BLAST of MELO.jh026965.1 vs. NCBI nr
Match: TYK20969.1 (hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 1.05e-44
Identity = 78/94 (82.98%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1   MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVP 60
           M+FAELGIR DLKDETYLAAFLSCW  LFVFP K SFLRPGVF+ ASLMA G IYSLAVP
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGW 94
           VLANIYH L LITKA N IG MDFHFPM+YVHGW
Sbjct: 327 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGW 360

[Close]

BLAST of MELO.jh026965.1 vs. NCBI nr
Match: KAA0052363.1 (hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 9.01e-43
Identity = 78/94 (82.98%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1   MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVP 60
           M+FAELGIR DLKDETYLAAFLSCW  LFVFP K SFLRPGVF+ ASLMA G IYSLAVP
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGW 94
           VLANIYH L LITKA N IG MDFHFPM+YVHGW
Sbjct: 327 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGW 360

[Close]

BLAST of MELO.jh026965.1 vs. NCBI nr
Match: KAA0031751.1 (hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (397), Expect = 1.11e-42
Identity = 77/94 (81.91%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVP 60
          M+FAELGIR DLKDETYLAAFLSCW  LFVFP K SFLRPGVF+  SLMA G IYSLAVP
Sbjct: 1  MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVVSLMAAGTIYSLAVP 60

Query: 61 VLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGW 94
          VLANIYH L LITKA N IG MDFHFPM+YVHGW
Sbjct: 61 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGW 94

[Close]

BLAST of MELO.jh026965.1 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (388), Expect = 3.63e-42
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1   MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVP 60
           M+FAELGIR DLKDETYLAAFLSCW  LFVFP K SFLRP VF+ ASLM  G IYSLAVP
Sbjct: 130 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPKKGSFLRPEVFRVASLMVAGTIYSLAVP 189

Query: 61  VLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGW 94
           VLANIYH L LITKA N IG MDFHFPM+YVHGW
Sbjct: 190 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGW 223

[Close]

BLAST of MELO.jh026965.1 vs. NCBI nr
Match: KAA0060611.1 (hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (393), Expect = 1.23e-41
Identity = 77/94 (81.91%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVP 60
           M+FAELGI+ DLKDETYLAAFLSCW  LFVFP K SFLRPGVF+ ASLMA G IYSLAVP
Sbjct: 279 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAAGTIYSLAVP 338

Query: 61  VLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGW 94
           VLANIYH L LITKA N IG MDFHF MYYVHGW
Sbjct: 339 VLANIYHGLGLITKASNPIGRMDFHFLMYYVHGW 372

[Close]

BLAST of MELO.jh026965.1 vs. ExPASy TrEMBL
Match: A0A5D3DCE5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18270G00010 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 5.10e-45
Identity = 78/94 (82.98%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1   MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVP 60
           M+FAELGIR DLKDETYLAAFLSCW  LFVFP K SFLRPGVF+ ASLMA G IYSLAVP
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGW 94
           VLANIYH L LITKA N IG MDFHFPM+YVHGW
Sbjct: 327 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGW 360

[Close]

BLAST of MELO.jh026965.1 vs. ExPASy TrEMBL
Match: A0A5A7U8X8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002060 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 4.36e-43
Identity = 78/94 (82.98%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1   MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVP 60
           M+FAELGIR DLKDETYLAAFLSCW  LFVFP K SFLRPGVF+ ASLMA G IYSLAVP
Sbjct: 267 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVASLMAAGTIYSLAVP 326

Query: 61  VLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGW 94
           VLANIYH L LITKA N IG MDFHFPM+YVHGW
Sbjct: 327 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGW 360

[Close]

BLAST of MELO.jh026965.1 vs. ExPASy TrEMBL
Match: A0A5A7SQC9 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00140 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 5.40e-43
Identity = 77/94 (81.91%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVP 60
          M+FAELGIR DLKDETYLAAFLSCW  LFVFP K SFLRPGVF+  SLMA G IYSLAVP
Sbjct: 1  MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRVVSLMAAGTIYSLAVP 60

Query: 61 VLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGW 94
          VLANIYH L LITKA N IG MDFHFPM+YVHGW
Sbjct: 61 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGW 94

[Close]

BLAST of MELO.jh026965.1 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 154 bits (388), Expect = 1.76e-42
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1   MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVP 60
           M+FAELGIR DLKDETYLAAFLSCW  LFVFP K SFLRP VF+ ASLM  G IYSLAVP
Sbjct: 130 MLFAELGIRDDLKDETYLAAFLSCWLCLFVFPKKGSFLRPEVFRVASLMVAGTIYSLAVP 189

Query: 61  VLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGW 94
           VLANIYH L LITKA N IG MDFHFPM+YVHGW
Sbjct: 190 VLANIYHGLGLITKASNPIGRMDFHFPMHYVHGW 223

[Close]

BLAST of MELO.jh026965.1 vs. ExPASy TrEMBL
Match: A0A5A7V4F4 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004890 PE=4 SV=1)

HSP 1 Score: 155 bits (393), Expect = 5.95e-42
Identity = 77/94 (81.91%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1   MIFAELGIRGDLKDETYLAAFLSCWWSLFVFPHKVSFLRPGVFKTASLMAIGIIYSLAVP 60
           M+FAELGI+ DLKDETYLAAFLSCW  LFVFP K SFLRPGVF+ ASLMA G IYSLAVP
Sbjct: 279 MLFAELGIKDDLKDETYLAAFLSCWLCLFVFPQKGSFLRPGVFRAASLMAAGTIYSLAVP 338

Query: 61  VLANIYHKLSLITKAFNSIGCMDFHFPMYYVHGW 94
           VLANIYH L LITKA N IG MDFHF MYYVHGW
Sbjct: 339 VLANIYHGLGLITKASNPIGRMDFHFLMYYVHGW 372

The following BLAST results are available for this feature:

BLAST of MELO.jh026965.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20969.1	1.05e-44	82.98	hypothetical protein E5676_scaffold18270G00010 [Cucumis melo var. makuwa]	[more]
KAA0052363.1	9.01e-43	82.98	hypothetical protein E6C27_scaffold207G002060 [Cucumis melo var. makuwa]	[more]
KAA0031751.1	1.11e-42	81.91	hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	3.63e-42	80.85	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]
KAA0060611.1	1.23e-41	81.91	hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh026965.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh026965.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DCE5	5.10e-45	82.98	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U8X8	4.36e-43	82.98	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SQC9	5.40e-43	81.91	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVI5	1.76e-42	80.85	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7V4F4	5.95e-42	81.91	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of MELO.jh026965.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019557	Aminotransferase-like, plant mobile domain	PFAM	PF10536	PMD	coord: 14..77 e-value: 1.8E-9 score: 37.2
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 4..95
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 4..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh026965.1.t1	MELO.jh026965.1.t1	mRNA