MELO.jh026721.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh026721.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionARM repeat superfamily protein isoform 2
Locationchr12: 17374396 .. 17377900 (+)
RNA-Seq ExpressionMELO.jh026721.1
SyntenyMELO.jh026721.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCCATCACCTTCTCCCCAATACCGTTACCTCAAGTTCTGGATTTCCATTCTCCAGATTCGTCTCTCTATGATTCCTTATTGGAAAAAGAGCTTAGTTTTTCATTGGAGCTATGGTACATGGCATGATTATTCTATACTTGGTGCAATACAACCTTTGTTGATTAAATTGAATTTTTGACCATATAATTACTTTCAGAATATCAATGCCAGTTGACATATTTAAGACTTTACAATGGACGAGGAAAAAGGATTACACGAAAGTTTCTGTTCTTGATCATTGGGTCGTTATTTAGGTTAACATCAACTCTTGGAGTAATTTTTATGATTGAAAACAATTTTATTTAGAACTCACTTTTAATTATTTTATGCTAGCTAGTTAGTTTGAGAAAAAGTTAGTTGTTTGCACAGTATGTTAATCCTACACATTTAAGTTAGTTTGAGAATAAGTTAGTTGTTTGCATGGTATGTTGGTCCTACACATTTAAGTTAGTTGGAGAATAAGTTAGTTGTTTGTACGGTATGTTATTACTTACCAAAATATGATGATGGTTAACCCACCCTTCACTGTAGCAAATATTTGGATACCACAAATTGATTATTGATTTACTTAAATAATTCTGAATCTTCTCATGTGAGAGATGAAATAACTTGTTCACTCGAAGATATCAACAAATAACTTATGCCATTGTGCCAAAGGAGGAAGTTCAACTTGTTGAGCTCGAAAACTGAGTGGCTATAAGATATTATTAGTCTTTGAGATGATTGCAGTTTACATTTGTTAGTTTGCTCTGAAATTTATTAAGGACAAATTGTTAAGTGAAATTCTTCACTTCTGTGTTTGGATTATGTAACTTGAATTCAAATCTTAAGCACATTCGATTTTACTTTTGTTTATAGGGGTTTCATACTTGTGTTGGATCTGGTAGGGAAAGGCAAACACCAGAATGGTAAAGGATAAAGATATTGAGGTAATTTTCATTATAGTTTATGTGTTTAGTACCTTTCAATTATATAAATACTAGATATAAATGTTGTCACCATGTTATTATAACTATAATAATTTCATAATTGTTGTGAGATATCATTGTGAACGCTTTTCCATTATTTTGTATGTCATCTCTTCCTCATTGTTGGATAGTGTTGCAGTTTCTTGCAGTATCATGATATCTTAATTTTCTGTTGATAATGCTTTCCTCATTTCCTTCTCCATTTCCTTATTTTGAAGTGTAACGTAGTAATCCTTCTGCATTTCTTGTCATGGGGCGAAGGTGACCTATACATGGAAAATTCAATGAGACAGTAATTCCTGTGGGTTTTATTTAGTTTGTTTTTAATTTCTGCATTCAGGATGAAGAAGATGTGAAGGCCATTGCTCGATTATTTGCTGATATGGGAGATTCATGTGTTGAATTGATTGCTACTAGTAATAGATTTTGTTACGTAGTTGAGGTACATTTTTGTCTTCATCATATTGTTTTCTTAATTTGTATTTTTCTCCCATTTTTTGGCCTACTTTCTAGGTTTCGATGAATCGATGTTAATAGTCTATGTTCTACTTGAAGTTACTTCACACCCTGAATTTGATATTGCCTCCATGACCTTTCATTTTTGGCACAACTTGCAGTTAAATTTGACAAAAAGGTTATTTATTCTGAGCTCTTTATTATCAACTATGATTCTTTTAGACCACAAACATATCGACCGTATTTTGTGGAAAGGGAACTGCTTTATAAGTTTTAGCACTTTAACCGAAGATAATAGTCATGATGTTTGATTATAGCAACGCAAGGTGTGTTGCTACATGAGTCTCGTGCTCTTTCAAGAATTTTAGTAGATGAAGTTGAATGAGAAGTTTGATTGTCTACCAATCTCTCTTTGTCTCTCTGCAATTTTTTTTTAGAAAAAAGGAGCATACTTCTGGCAACAGTCACCTATTGTGAATTTGTGTTATTTTCATTCTTCATAAGGTTAAAAAGGTTTTTTCGATGGAGAAGCACTATGTGAGTTAACTGTTTCATCTACTGTGAACATTTTTGTTTGCTCGTTTCATTTCAATTTCAATACTGGCACTTTACTAGTTTACTTCTCTTCTATCTATAGAAGACTTGTGTTTACTTTTGTAAAATCTATTAATCATTGCCGTTCTTTTGTACTTGTCTACAAATTTGGTGTGCGTTATCATTTGGTAGTAATGTCAACATGCTCTCTTCATTGAAATTAGTATATGTGTTTGTCTTGGTAGGGCAATTTGGATTCTTTCATCTATCATTCACAATATATTTTCTTTAGTATAAATATATACCATTTCTTTCATTTTCTAGTTTATTGTTTGTTATTCTAGTTGTTATAAATGTGGTCAACCGTAAACAACCATGTTTATAAACTCAAGAGATCAAGAATTGTTATTTTCCACTTTTTGTATCTCTTGGCGTCTTACAAAGAGAGAAAGATCATATTGAAGGTTTTGCTCCTGAGATGATGTTTTATATATAAGCAACAATAGAGAAACTTTCTATTTGAATTTGAAATGCTTATTATATTTTTATTTGTTTGTTTGTTTGTTTTAATTATTATTTAACTGTAAAACAATCTCTTTGCAGGAAAGATTAGATCACTTTAATGATTGAAAGATCTGTTGTACTCTTTGCCCTTATAAATGGTAACTGTAAAACAATCTCTTTGCAGGAAGTTAGTGCTTGTAAAGTATAGCGAGTAATTCTTCCTCATACTTCATTATATGTATTAAGGTGTGTTGGGCATAAAACTTTTTAGTGCACATCAATGAGCTTTTAAATCCTTTGCAAATGGACGTACCTCTCACTGTGTTATAGTTTTATTGCCTCATAACGTAGTTTAGTTTTATTGCCTTATAATGTAAAGGTTGTTGAGAAAGAAGACTTTGAAGAAGCTATAAAATTAAAACTATTTGTGTTATAGTTTCAACTTGAAGTGGCTAGCAAGGAATGAATGACACTTTTGTTTTTACTTTTTAAATTTATTGCTATTCTTAGTTTATTTGTAGGTTTACTCTTGATGATTAGAAAACCCAAGTCTCTATTGCATAATACTTTTGTGAAAATTGTGCATTGTATACTTAAACAGTAGCATAATTTTGTGACCCGTATATGTAAGGCTTTCCATTTGAAATACCCTCTACATTTTCAATACCAAGCTTAGATGTTATAGAAAAGAATAATTTACTGCCAAGCTTAAAAGTTACTGTCGTTGAAGTGTGAATGTGCTGTGTTGTTGAAGTGAATGTGCTGTATTGTTGAATCAATTTTGTTTCCCTTTTTTTCTTACTAGGTTTTGCCAGATCCATTGGAGCAACGAAGTCATATTTGCGGCAATTCATTGATGTATAGGCATTTTTGTAGGTTTGGTAGGAAAATTTCTGGTTTAAATGTAGTTATTTAAATAGCTTGTTCGTAACAAACCATATATGTACCAACACTTAAAGCGATATTATAAAGTGTATGTTTCTTTATATTAAAACGTC

mRNA sequence

ATGGCATCCATCACCTTCTCCCCAATACCGTTACCTCAAGTTCTGGATTTCCATTCTCCAGATTCGTCTCTCTATGATTCCTTATTGGAAAAAGAGCTTAGTTTTTCATTGGAGCTATGGGGTTTCATACTTGTGTTGGATCTGGTAGGGAAAGGCAAACACCAGAATGGTAAAGGATAAAGATATTGAGGATGAAGAAGATGTGAAGGCCATTGCTCGATTATTTGCTGATATGGGAGATTCATGTGTTGAATTGATTGCTACTAGTAATAGATTTTGTTACGTAGTTGAGGTTTTGCCAGATCCATTGGAGCAACGAAGTCATATTTGCGGCAATTCATTGATGTATAGGCATTTTTGTAGGTTTGGTAGGAAAATTTCTGGTTTAAATGTAGTTATTTAAATAGCTTGTTCGTAACAAACCATATATGTACCAACACTTAAAGCGATATTATAAAGTGTATGTTTCTTTATATTAAAACGTC

Coding sequence (CDS)

ATGGTAAAGGATAAAGATATTGAGGATGAAGAAGATGTGAAGGCCATTGCTCGATTATTTGCTGATATGGGAGATTCATGTGTTGAATTGATTGCTACTAGTAATAGATTTTGTTACGTAGTTGAGGTTTTGCCAGATCCATTGGAGCAACGAAGTCATATTTGCGGCAATTCATTGATGTATAGGCATTTTTGTAGGTTTGGTAGGAAAATTTCTGGTTTAAATGTAGTTATTTAA

Protein sequence

MVKDKDIEDEEDVKAIARLFADMGDSCVELIATSNRFCYVVEVLPDPLEQRSHICGNSLMYRHFCRFGRKISGLNVVI
Homology
[Close]
BLAST of MELO.jh026721.1 vs. NCBI nr
Match: KAF5765814.1 (putative armadillo-like helical protein [Helianthus annuus] >KAF5801369.1 putative armadillo-like helical protein [Helianthus annuus])

HSP 1 Score: 50.8 bits (120), Expect = 5.62e-06
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 7  IEDEEDVKAIARLFADMGDSCVELIATSNRFCYVV 41
          ++DEEDVKAIARLFAD+GDS VELIAT N+   V+
Sbjct: 22 LKDEEDVKAIARLFADIGDSYVELIATDNKARLVI 56

[Close]
BLAST of MELO.jh026721.1 vs. NCBI nr
Match: XP_038687892.1 (transportin MOS14-like isoform X4 [Tripterygium wilfordii])

HSP 1 Score: 53.1 bits (126), Expect = 8.16e-06
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 7   IEDEEDVKAIARLFADMGDSCVELIAT-SNRFCYVVEVLPDPLEQRSH 53
           ++DEEDVKAIARLFADMGDS VELIAT SN    +V+ L   LE  SH
Sbjct: 283 LKDEEDVKAIARLFADMGDSYVELIATGSNESMLIVQAL---LEVASH 327

[Close]
BLAST of MELO.jh026721.1 vs. NCBI nr
Match: XP_038687890.1 (transportin MOS14-like isoform X3 [Tripterygium wilfordii] >XP_038687891.1 transportin MOS14-like isoform X3 [Tripterygium wilfordii])

HSP 1 Score: 53.1 bits (126), Expect = 8.17e-06
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 7   IEDEEDVKAIARLFADMGDSCVELIAT-SNRFCYVVEVLPDPLEQRSH 53
           ++DEEDVKAIARLFADMGDS VELIAT SN    +V+ L   LE  SH
Sbjct: 150 LKDEEDVKAIARLFADMGDSYVELIATGSNESMLIVQAL---LEVASH 194

[Close]
BLAST of MELO.jh026721.1 vs. NCBI nr
Match: XP_038687889.1 (transportin MOS14-like isoform X2 [Tripterygium wilfordii])

HSP 1 Score: 53.1 bits (126), Expect = 8.19e-06
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 7   IEDEEDVKAIARLFADMGDSCVELIAT-SNRFCYVVEVLPDPLEQRSH 53
           ++DEEDVKAIARLFADMGDS VELIAT SN    +V+ L   LE  SH
Sbjct: 206 LKDEEDVKAIARLFADMGDSYVELIATGSNESMLIVQAL---LEVASH 250

[Close]
BLAST of MELO.jh026721.1 vs. NCBI nr
Match: XP_038687888.1 (transportin MOS14-like isoform X1 [Tripterygium wilfordii] >KAF5730107.1 ARM repeat superfamily protein isoform 2 [Tripterygium wilfordii])

HSP 1 Score: 53.1 bits (126), Expect = 8.21e-06
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 7   IEDEEDVKAIARLFADMGDSCVELIAT-SNRFCYVVEVLPDPLEQRSH 53
           ++DEEDVKAIARLFADMGDS VELIAT SN    +V+ L   LE  SH
Sbjct: 283 LKDEEDVKAIARLFADMGDSYVELIATGSNESMLIVQAL---LEVASH 327

[Close]
BLAST of MELO.jh026721.1 vs. ExPASy Swiss-Prot
Match: Q8GUL2 (Transportin MOS14 OS=Arabidopsis thaliana OX=3702 GN=MOS14 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-04
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 8   EDEEDVKAIARLFADMGDSCVELIATSN 36
           +DEEDVKAI RLFAD+GDS VELIAT +
Sbjct: 284 KDEEDVKAIGRLFADVGDSYVELIATGS 311

[Close]
BLAST of MELO.jh026721.1 vs. ExPASy TrEMBL
Match: A0A251T5H1 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0111761 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.72e-06
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 7  IEDEEDVKAIARLFADMGDSCVELIATSNRFCYVV 41
          ++DEEDVKAIARLFAD+GDS VELIAT N+   V+
Sbjct: 22 LKDEEDVKAIARLFADIGDSYVELIATDNKARLVI 56

[Close]
BLAST of MELO.jh026721.1 vs. ExPASy TrEMBL
Match: A0A7J7C8E5 (ARM repeat superfamily protein isoform 2 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW20G00477 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.97e-06
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 7   IEDEEDVKAIARLFADMGDSCVELIAT-SNRFCYVVEVLPDPLEQRSH 53
           ++DEEDVKAIARLFADMGDS VELIAT SN    +V+ L   LE  SH
Sbjct: 283 LKDEEDVKAIARLFADMGDSYVELIATGSNESMLIVQAL---LEVASH 327

[Close]
BLAST of MELO.jh026721.1 vs. ExPASy TrEMBL
Match: A0A251SAW5 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0485871 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.15e-06
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 7  IEDEEDVKAIARLFADMGDSCVELIATSN 35
          ++DEEDVKAIARLFAD+GDS VELIAT N
Sbjct: 22 LKDEEDVKAIARLFADIGDSYVELIATGN 50

[Close]
BLAST of MELO.jh026721.1 vs. ExPASy TrEMBL
Match: A0A1S4E5C1 (uncharacterized protein LOC103502233 OS=Cucumis melo OX=3656 GN=LOC103502233 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 7.95e-06
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 7  IEDEEDVKAIARLFADMGDSCVELIATSNRFCYVV-----EVLPDP 47
          I+DEEDVKAIA+LFADMGDS VELIAT +    ++     EV  DP
Sbjct: 2  IQDEEDVKAIAQLFADMGDSYVELIATGSDESMLIVHALLEVTSDP 47

[Close]
BLAST of MELO.jh026721.1 vs. ExPASy TrEMBL
Match: A0A2H5NFJ6 (Xpo1 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_040700 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.39e-05
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 7   IEDEEDVKAIARLFADMGDSCVELIAT-SNRFCYVVEVLPDPLEQRSH 53
           I+DEEDVKAIARLFADMGDS VELIAT S+    +V  L   LE  SH
Sbjct: 269 IQDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHAL---LEVASH 313

[Close]
BLAST of MELO.jh026721.1 vs. TAIR 10
Match: AT5G62600.1 (ARM repeat superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 2.4e-05
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 8   EDEEDVKAIARLFADMGDSCVELIATSN 36
           +DEEDVKAI RLFAD+GDS VELIAT +
Sbjct: 284 KDEEDVKAIGRLFADVGDSYVELIATGS 311

The following BLAST results are available for this feature:
BLAST of MELO.jh026721.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5765814.15.62e-0671.43putative armadillo-like helical protein [Helianthus annuus] >KAF5801369.1 putati... [more]
XP_038687892.18.16e-0666.67transportin MOS14-like isoform X4 [Tripterygium wilfordii][more]
XP_038687890.18.17e-0666.67transportin MOS14-like isoform X3 [Tripterygium wilfordii] >XP_038687891.1 trans... [more]
XP_038687889.18.19e-0666.67transportin MOS14-like isoform X2 [Tripterygium wilfordii][more]
XP_038687888.18.21e-0666.67transportin MOS14-like isoform X1 [Tripterygium wilfordii] >KAF5730107.1 ARM rep... [more]
BLAST of MELO.jh026721.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GUL23.3e-0478.57Transportin MOS14 OS=Arabidopsis thaliana OX=3702 GN=MOS14 PE=1 SV=1[more]
BLAST of MELO.jh026721.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A251T5H12.72e-0671.43Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr04g0111761 PE... [more]
A0A7J7C8E53.97e-0666.67ARM repeat superfamily protein isoform 2 OS=Tripterygium wilfordii OX=458696 GN=... [more]
A0A251SAW55.15e-0682.76Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0485871 PE... [more]
A0A1S4E5C17.95e-0660.87uncharacterized protein LOC103502233 OS=Cucumis melo OX=3656 GN=LOC103502233 PE=... [more]
A0A2H5NFJ61.39e-0566.67Xpo1 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_040700 PE=4 SV=... [more]
BLAST of MELO.jh026721.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G62600.12.4e-0578.57ARM repeat superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh026721.1.t1MELO.jh026721.1.t1mRNA