MELO.jh026448.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh026448.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein CHROMATIN REMODELING 5 isoform X1
Locationchr12: 12204914 .. 12205221 (-)
RNA-Seq ExpressionMELO.jh026448.1
SyntenyMELO.jh026448.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGTTGTTGAGCGATTTTGGTTGCAATATCCCGGCACCGGAGGCTCATCCAGCAAGTCAGTTTTTAGCGGAATGGTTCGAGGCACGTGGGGGGTCGCCCGGGAATGGGCTTAGGCTATGTTCGCACGTGGGGTGTGGACGTCCGGAGACGAGACGACATGAGTTTCGTCGGTGTTCTGTTTGTGGTGCTGTTAATTACTGCTCACGTGCGTGTCAGGCTCTTGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTGGAACGATGGCTCGATGACAATGATGACGGTGGGGACGATGTAG

mRNA sequence

ATGTCCGTTGTTGAGCGATTTTGGTTGCAATATCCCGGCACCGGAGGCTCATCCAGCAAGTCAGTTTTTAGCGGAATGGTTCGAGGCACGTGGGGGGTCGCCCGGGAATGGGCTTAGGCTATGTTCGCACGTGGGGTGTGGACGTCCGGAGACGAGACGACATGAGTTTCGTCGGTGTTCTGTTTGTGGTGCTGTTAATTACTGCTCACGTGCGTGTCAGGCTCTTGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTGGAACGATGGCTCGATGACAATGATGACGGTGGGGACGATGTAG

Coding sequence (CDS)

ATGGGCTTAGGCTATGTTCGCACGTGGGGTGTGGACGTCCGGAGACGAGACGACATGAGTTTCGTCGGTGTTCTGTTTGTGGTGCTGTTAATTACTGCTCACGTGCGTGTCAGGCTCTTGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTGGAACGATGGCTCGATGACAATGATGACGGTGGGGACGATGTAG

Protein sequence

MGLGYVRTWGVDVRRRDDMSFVGVLFVVLLITAHVRVRLLIGNSAIRWIVRRWNDGSMTMMTVGTM
Homology
BLAST of MELO.jh026448.1 vs. NCBI nr
Match: KAA0032607.1 (protein CHROMATIN REMODELING 5 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 1.02e-28
Identity = 56/62 (90.32%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MGLGYVRTWGVDVRRRDDMSFVGVLFVVLLITAHVRVRLLIGNSAIRWIVRRWNDGSMTM 60
          MGLGYVRTWGVDVRRRDDMS VGV FVV LI AHVRVRLLIGNSAIRWIVRRWNDGSMT 
Sbjct: 37 MGLGYVRTWGVDVRRRDDMSSVGVPFVVSLIPAHVRVRLLIGNSAIRWIVRRWNDGSMTT 96

Query: 61 MT 62
           T
Sbjct: 97 AT 98

BLAST of MELO.jh026448.1 vs. NCBI nr
Match: KAA0032824.1 (ras-related protein RABH1b-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 5.58e-06
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 1  MGLGYVRTWGVDVRRRDDMSFVGVLFVV 28
          MGLG VRTWGVDVRRRDDMS VGV FVV
Sbjct: 1  MGLGCVRTWGVDVRRRDDMSSVGVPFVV 28

BLAST of MELO.jh026448.1 vs. NCBI nr
Match: KAA0053634.1 (putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa] >TYK00803.1 putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 6.19e-06
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 1  MGLGYVRTWGVDVRRRDDMSFVGVLFVV 28
          MGLG VRTWGVDVRRRDDMS VGV FVV
Sbjct: 43 MGLGCVRTWGVDVRRRDDMSSVGVPFVV 70

BLAST of MELO.jh026448.1 vs. NCBI nr
Match: KAA0039079.1 (putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa] >TYK18662.1 putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 7.70e-06
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 1  MGLGYVRTWGVDVRRRDDMSFVGVLFVV 28
          MGLG VRTWG+DVRRRDDMS VGV FVV
Sbjct: 1  MGLGCVRTWGMDVRRRDDMSSVGVPFVV 28

BLAST of MELO.jh026448.1 vs. ExPASy TrEMBL
Match: A0A5A7STC6 (Protein CHROMATIN REMODELING 5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00790 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 4.95e-29
Identity = 56/62 (90.32%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MGLGYVRTWGVDVRRRDDMSFVGVLFVVLLITAHVRVRLLIGNSAIRWIVRRWNDGSMTM 60
          MGLGYVRTWGVDVRRRDDMS VGV FVV LI AHVRVRLLIGNSAIRWIVRRWNDGSMT 
Sbjct: 37 MGLGYVRTWGVDVRRRDDMSSVGVPFVVSLIPAHVRVRLLIGNSAIRWIVRRWNDGSMTT 96

Query: 61 MT 62
           T
Sbjct: 97 AT 98

BLAST of MELO.jh026448.1 vs. ExPASy TrEMBL
Match: A0A5A7SNP7 (Ras-related protein RABH1b-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00840 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.70e-06
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 1  MGLGYVRTWGVDVRRRDDMSFVGVLFVV 28
          MGLG VRTWGVDVRRRDDMS VGV FVV
Sbjct: 1  MGLGCVRTWGVDVRRRDDMSSVGVPFVV 28

BLAST of MELO.jh026448.1 vs. ExPASy TrEMBL
Match: A0A5A7UEI9 (Putative magnesium transporter NIPA2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00040 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.00e-06
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 1  MGLGYVRTWGVDVRRRDDMSFVGVLFVV 28
          MGLG VRTWGVDVRRRDDMS VGV FVV
Sbjct: 43 MGLGCVRTWGVDVRRRDDMSSVGVPFVV 70

BLAST of MELO.jh026448.1 vs. ExPASy TrEMBL
Match: A0A5D3D549 (Putative magnesium transporter NIPA2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9182G00010 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.73e-06
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 1  MGLGYVRTWGVDVRRRDDMSFVGVLFVV 28
          MGLG VRTWG+DVRRRDDMS VGV FVV
Sbjct: 1  MGLGCVRTWGMDVRRRDDMSSVGVPFVV 28

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0032607.11.02e-2890.32protein CHROMATIN REMODELING 5 isoform X1 [Cucumis melo var. makuwa][more]
KAA0032824.15.58e-0689.29ras-related protein RABH1b-like isoform X1 [Cucumis melo var. makuwa][more]
KAA0053634.16.19e-0689.29putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0039079.17.70e-0685.71putative magnesium transporter NIPA2 isoform X2 [Cucumis melo var. makuwa] >TYK1... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7STC64.95e-2990.32Protein CHROMATIN REMODELING 5 isoform X1 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A5A7SNP72.70e-0689.29Ras-related protein RABH1b-like isoform X1 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A5A7UEI93.00e-0689.29Putative magnesium transporter NIPA2 isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3D5493.73e-0685.71Putative magnesium transporter NIPA2 isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh026448.1.t1MELO.jh026448.1.t1mRNA