MELO.jh026387.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh026387.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRibosomal protein L5 (Mitochondrion)
Locationchr12: 10802848 .. 10803467 (-)
RNA-Seq ExpressionMELO.jh026387.1
SyntenyMELO.jh026387.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGACTTCAACCCACACTCCTGGAATTCTCCTTGACACGTTTTCCCAAGGTATAGATTGATAAGCAAACTCGTTGGGCAAATGCGAGCGAGAATAGCTCGGACTCATTTTCCTCGTCGTAGAGTAAAAAGCATTCTCCCGACGGGTTCTTCCCTTTGCTTCGTATTGGTCAGAAGTCCTTCGATCTTCAGGGCACGTACTCCAAGGACTTAAAATACACTCTCGACATGCTACCTAACACATTTTCCCAAGGTATAGGTCAAGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCGACCCAAAACAGTCCAAAAGATGGCTAATACTTCCAACGAGTGGTGAATGCTCGTCCGGTGTCAGAAACAACTAAAAATTCACTTACAGGGAAGGAAACGGGCTGAGCGCGAGGACTTTCGTCTTTGTCCCTAGAAAATGCGAGCGAGAATGCCCCGGACTCAATTTTCTCGTCCAGGGATAAAAAGCAGTCCTCAGACGGTTTCTTCCCTTTGCATCGTATCGGTCATAAGTCTTTCGATCTTTGGTGCTCGTACTCCGAGGACTTCGATCGACACTCCAGGCATGCTCCCTGACATGTTTTCCTAAGGTATAGGTCGTGAAGC

mRNA sequence

AGGACTTCAACCCACACTCCTGGAATTCTCCTTGACACGTTTTCCCAAGGTATAGGTCAAGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCGACCCAAAACAGTCCAAAAGATGGCTAATACTTCCAACGAGTGGTGAATGCTCGTCCGGTGTCAGAAACAACTAAAAATTCACTTACAGGGAAGGAAACGGGCTGAGCGCGAGGACTTTCGTCTTTGTCCCTAGAAAATGCGAGCGAGAATGCCCCGGACTCAATTTTCTCGTCCAGGGATAAAAAGCAGTCCTCAGACGGTTTCTTCCCTTTGCATCGTATCGGTCATAAGTCTTTCGATCTTTGGTGCTCGTACTCCGAGGACTTCGATCGACACTCCAGGCATGCTCCCTGACATGTTTTCCTAAGGTATAGGTCGTGAAGC

Coding sequence (CDS)

ATGCGAGCGAGAATGCCCCGGACTCAATTTTCTCGTCCAGGGATAAAAAGCAGTCCTCAGACGGTTTCTTCCCTTTGCATCGTATCGGTCATAAGTCTTTCGATCTTTGGTGCTCGTACTCCGAGGACTTCGATCGACACTCCAGGCATGCTCCCTGACATGTTTTCCTAA

Protein sequence

MRARMPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMFS
Homology
BLAST of MELO.jh026387.1 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 7.13e-18
Identity = 45/55 (81.82%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 2    RARMPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMFS 56
            RARMPRTQFSRPG KS P TVSSLC V VISLSIFGART RTS  T GMLPD FS
Sbjct: 1368 RARMPRTQFSRPGAKSGPPTVSSLCSVLVISLSIFGARTLRTSTHTSGMLPDTFS 1422

BLAST of MELO.jh026387.1 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 3.37e-17
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 2   RARMPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMFS 56
           RARMP+TQFSRPG KS P TVS+LC V V SLSIFGA TPRTS  TPGMLPD FS
Sbjct: 295 RARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFS 349

BLAST of MELO.jh026387.1 vs. NCBI nr
Match: KAA0037172.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.09e-17
Identity = 42/55 (76.36%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 2  RARMPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMFS 56
          RARMP TQFSRPG+KS P TVSSLC V  ISLSIF A T RTS  TPGMLPD FS
Sbjct: 39 RARMPLTQFSRPGVKSDPPTVSSLCFVLAISLSIFEACTLRTSTHTPGMLPDTFS 93

BLAST of MELO.jh026387.1 vs. NCBI nr
Match: KAA0059489.1 (ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 7.56e-13
Identity = 36/52 (69.23%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 5  MPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMFS 56
          MPRTQFS P +KS   TVSSLC V VISLSIFGAR   TS+ TPGML   FS
Sbjct: 1  MPRTQFSHPRVKSGSPTVSSLCSVFVISLSIFGARASSTSVHTPGMLLHTFS 52

BLAST of MELO.jh026387.1 vs. NCBI nr
Match: TYK23423.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.82e-12
Identity = 38/54 (70.37%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 2  RARMPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMF 55
          RARMP+T  S PG KS P  VSSLC V VISLSIFGARTPR S  T GML  MF
Sbjct: 39 RARMPQTLVSHPGAKSRPPMVSSLCFVLVISLSIFGARTPRNSTHTSGMLLVMF 92

BLAST of MELO.jh026387.1 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.45e-18
Identity = 45/55 (81.82%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 2    RARMPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMFS 56
            RARMPRTQFSRPG KS P TVSSLC V VISLSIFGART RTS  T GMLPD FS
Sbjct: 1368 RARMPRTQFSRPGAKSGPPTVSSLCSVLVISLSIFGARTLRTSTHTSGMLPDTFS 1422

BLAST of MELO.jh026387.1 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.63e-17
Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 2   RARMPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMFS 56
           RARMP+TQFSRPG KS P TVS+LC V V SLSIFGA TPRTS  TPGMLPD FS
Sbjct: 295 RARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFS 349

BLAST of MELO.jh026387.1 vs. ExPASy TrEMBL
Match: A0A5D3CQ36 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00910 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.43e-17
Identity = 42/55 (76.36%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 2  RARMPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMFS 56
          RARMP TQFSRPG+KS P TVSSLC V  ISLSIF A T RTS  TPGMLPD FS
Sbjct: 39 RARMPLTQFSRPGVKSDPPTVSSLCFVLAISLSIFEACTLRTSTHTPGMLPDTFS 93

BLAST of MELO.jh026387.1 vs. ExPASy TrEMBL
Match: A0A5A7V129 (Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G002350 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.66e-13
Identity = 36/52 (69.23%), Postives = 38/52 (73.08%), Query Frame = 0

Query: 5  MPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMFS 56
          MPRTQFS P +KS   TVSSLC V VISLSIFGAR   TS+ TPGML   FS
Sbjct: 1  MPRTQFSHPRVKSGSPTVSSLCSVFVISLSIFGARASSTSVHTPGMLLHTFS 52

BLAST of MELO.jh026387.1 vs. ExPASy TrEMBL
Match: A0A5D3DIK9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00040 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.81e-13
Identity = 38/54 (70.37%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 2  RARMPRTQFSRPGIKSSPQTVSSLCIVSVISLSIFGARTPRTSIDTPGMLPDMF 55
          RARMP+T  S PG KS P  VSSLC V VISLSIFGARTPR S  T GML  MF
Sbjct: 39 RARMPQTLVSHPGAKSRPPMVSSLCFVLVISLSIFGARTPRNSTHTSGMLLVMF 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062888.17.13e-1881.82non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
TYK22521.13.37e-1778.18uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
KAA0037172.17.09e-1776.36putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK13901.1 putative nucleas... [more]
KAA0059489.17.56e-1369.23ribosomal protein L5 [Cucumis melo var. makuwa][more]
TYK23423.11.82e-1270.37DUF4283 domain-containing protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V5J23.45e-1881.82Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5D3DFP21.63e-1778.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CQ363.43e-1776.36Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7V1293.66e-1369.23Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DIK98.81e-1370.37DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh026387.1.t1MELO.jh026387.1.t1mRNA