MELO.jh026362.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh026362.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPre-mRNA-processing factor 39 isoform X3
Locationchr12: 10173428 .. 10174480 (-)
RNA-Seq ExpressionMELO.jh026362.1
SyntenyMELO.jh026362.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCCCAACACAGAGAAAGCAACGGTCGTGAGTGCTTCAATAAGGCATGAGTTATCGAGCATTTTCTTCGAGGTACGAATAAAGTTTTCATGTTTGCTGGGGAAAAACTTTTGAGGGTTGAAGGCGTAATTACTAATTGCAAATTACAAGTGAAGAATTAATTCTAGTATACAACTAACTGTTGATTTATGTTGGTGGGTCTAATATTGAGACAGTTTGATATAAGATTATCTAGTTATAAAGGTCTCTTGTTTTTCCACCTTACTCCGGATCTCACTGTCAATATTTCCATAGCATGTATGATATTCTTTGACAAAACTTGGTATTTCAATTGTTAATGAGGAATAACCCCTCCCCCCCCCTCCCCTCCCCCCATAATTCATGGTATAGTTGTCATCTTTCATCTATCATTCAATTGATTCATGGTACAGTTGTCAAGTAGTTGAGAATTTGGTTCCTCGTACATTATGAGACTTTGGTATGTATCTTCTTGTTGTTGGTTTTTGTTTCTTTGCTTGGTGGGATTGTACATTTAAGTTTATATAAACTTAAGCACCTTAGATTTGGTTTTTGTTTCTTTCCTTATTTCTTGTTGGTTTTGGTTCATTATACTAGTGTAGAATTGGTGGCATTTTCCTACTTGATTTCTTCTCTTGTTTGGAATGAGTATGTTCAATTATTTCGATTATATGATTTATACTTTGGTATGCAAGGTATCATTTCTTTTCCCTTTAGCTCCATTGATTTAAGTTCCTTATAAAGCTGAGGTACTGATACTAGTTATGATAATGTTTGTTGCTCTACTAATGTTATGATAATGTTTTTAGAGGGAAGCTGAAATCCAAGGAATGTACGCAAGGTAGTCGCAGGCAAGGGAAGAGGTAGAGACGTTGTGTGAAGAAGATGAAGACGAGCACAGTGACACCATATGTGGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCATGGGAAATTTGTTGTATGAAAAAAAGCTTCAGTTTATCAGTTTTCTTATGA

mRNA sequence

TGCCCAACACAGAGAAAGCAACGGTCGTGAGTGCTTCAATAAGGCATGAGTTATCGAGCATTTTCTTCGAGTAATGTTATGATAATGTTTTTAGAGGGAAGCTGAAATCCAAGGAATGTACGCAAGGTAGTCGCAGGCAAGGGAAGAGGTAGAGACGTTGTGTGAAGAAGATGAAGACGAGCACAGTGACACCATATGTGGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCATGGGAAATTTGTTGTATGAAAAAAAGCTTCAGTTTATCAGTTTTCTTATGA

Coding sequence (CDS)

ATGAAGACGAGCACAGTGACACCATATGTGGGGCATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCATGGGAAATTTGTTGTATGAAAAAAAGCTTCAGTTTATCAGTTTTCTTATG

Protein sequence

MKTSTVTPYVGHAVRTMLQMNFGFAVIFVRNGSMGNLLYEKKLQFISFLM
Homology
[Close]
BLAST of MELO.jh026362.1 vs. NCBI nr
Match: TYK10342.1 (uncharacterized protein E5676_scaffold367G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.75e-21
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1  MKTSTVTPYVGHAVRTMLQMNFGFAVIFVRNGSMGNLLYEKKLQFISFLM 50
          MKTSTVTPYVGH VRT+LQMNFGFAVI +RNGSMGNLLYE+ LQFISFL+
Sbjct: 17 MKTSTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLV 66

[Close]
BLAST of MELO.jh026362.1 vs. NCBI nr
Match: KAA0058974.1 (hypothetical protein E6C27_scaffold98G001610 [Cucumis melo var. makuwa] >TYK11007.1 hypothetical protein E5676_scaffold874G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 9.64e-16
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 1  MKTSTVTPYVGHAVRTMLQMNFGFAVIFVRNGSMGNLLYEKK 42
          MKTSTVTPYVGHAVRTMLQMNFGFAVI VRNGSMGNLL   K
Sbjct: 27 MKTSTVTPYVGHAVRTMLQMNFGFAVISVRNGSMGNLLCPSK 68

[Close]
BLAST of MELO.jh026362.1 vs. NCBI nr
Match: XP_016903219.1 (PREDICTED: uncharacterized protein LOC103502427 isoform X2 [Cucumis melo] >KAA0039695.1 pre-mRNA-processing factor 39 isoform X3 [Cucumis melo var. makuwa] >TYJ96187.1 pre-mRNA-processing factor 39 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 5.19e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 11  GHAVRTMLQMNFGFAVIFVRNGSMGNLLYEKKLQFISFLM 50
           GH +RTMLQMNFGFAVIFVRNGS GNLLYE+ LQFISFL+
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLV 136

[Close]
BLAST of MELO.jh026362.1 vs. NCBI nr
Match: XP_016903218.1 (PREDICTED: uncharacterized protein LOC103502427 isoform X1 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 5.95e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 11  GHAVRTMLQMNFGFAVIFVRNGSMGNLLYEKKLQFISFLM 50
           GH +RTMLQMNFGFAVIFVRNGS GNLLYE+ LQFISFL+
Sbjct: 103 GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLV 142

[Close]
BLAST of MELO.jh026362.1 vs. NCBI nr
Match: AFK40571.1 (unknown [Medicago truncatula])

HSP 1 Score: 47.4 bits (111), Expect = 1.88e-05
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 0 

Query: 2  KTSTVTPYVGHAVRTMLQMNFGFAVIFVRNGSMGN 36
          KTS V P+VG AV T  +MNFG AVIFVR G+M N
Sbjct: 20 KTSIVKPFVGAAVETTTRMNFGLAVIFVRGGTMEN 54

[Close]
BLAST of MELO.jh026362.1 vs. ExPASy TrEMBL
Match: A0A5D3CGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00170 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.45e-22
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 1  MKTSTVTPYVGHAVRTMLQMNFGFAVIFVRNGSMGNLLYEKKLQFISFLM 50
          MKTSTVTPYVGH VRT+LQMNFGFAVI +RNGSMGNLLYE+ LQFISFL+
Sbjct: 17 MKTSTVTPYVGHVVRTVLQMNFGFAVISMRNGSMGNLLYEEMLQFISFLV 66

[Close]
BLAST of MELO.jh026362.1 vs. ExPASy TrEMBL
Match: A0A5A7UV27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00450 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.67e-16
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 1  MKTSTVTPYVGHAVRTMLQMNFGFAVIFVRNGSMGNLLYEKK 42
          MKTSTVTPYVGHAVRTMLQMNFGFAVI VRNGSMGNLL   K
Sbjct: 27 MKTSTVTPYVGHAVRTMLQMNFGFAVISVRNGSMGNLLCPSK 68

[Close]
BLAST of MELO.jh026362.1 vs. ExPASy TrEMBL
Match: A0A5D3BAP5 (Pre-mRNA-processing factor 39 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00140 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.51e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 11  GHAVRTMLQMNFGFAVIFVRNGSMGNLLYEKKLQFISFLM 50
           GH +RTMLQMNFGFAVIFVRNGS GNLLYE+ LQFISFL+
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLV 136

[Close]
BLAST of MELO.jh026362.1 vs. ExPASy TrEMBL
Match: A0A1S4E4R6 (uncharacterized protein LOC103502427 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502427 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.51e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 11  GHAVRTMLQMNFGFAVIFVRNGSMGNLLYEKKLQFISFLM 50
           GH +RTMLQMNFGFAVIFVRNGS GNLLYE+ LQFISFL+
Sbjct: 97  GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLV 136

[Close]
BLAST of MELO.jh026362.1 vs. ExPASy TrEMBL
Match: A0A1S4E4Q8 (uncharacterized protein LOC103502427 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502427 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.88e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 11  GHAVRTMLQMNFGFAVIFVRNGSMGNLLYEKKLQFISFLM 50
           GH +RTMLQMNFGFAVIFVRNGS GNLLYE+ LQFISFL+
Sbjct: 103 GHVMRTMLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLV 142

The following BLAST results are available for this feature:
BLAST of MELO.jh026362.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK10342.11.75e-2186.00uncharacterized protein E5676_scaffold367G00170 [Cucumis melo var. makuwa][more]
KAA0058974.19.64e-1690.48hypothetical protein E6C27_scaffold98G001610 [Cucumis melo var. makuwa] >TYK1100... [more]
XP_016903219.15.19e-1485.00PREDICTED: uncharacterized protein LOC103502427 isoform X2 [Cucumis melo] >KAA00... [more]
XP_016903218.15.95e-1485.00PREDICTED: uncharacterized protein LOC103502427 isoform X1 [Cucumis melo][more]
AFK40571.11.88e-0565.71unknown [Medicago truncatula][more]
BLAST of MELO.jh026362.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh026362.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CGG98.45e-2286.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UV274.67e-1690.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BAP52.51e-1485.00Pre-mRNA-processing factor 39 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S4E4R62.51e-1485.00uncharacterized protein LOC103502427 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E4Q82.88e-1485.00uncharacterized protein LOC103502427 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of MELO.jh026362.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh026362.1.t1MELO.jh026362.1.t1mRNA