MELO.jh026224.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh026224.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr12: 6779750 .. 6780451 (-)
RNA-Seq Expression	MELO.jh026224.1
Synteny	MELO.jh026224.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCATTTCCACGAAGTACTTCAATTACACAAGTCCCAATAACAACAGAAAATAAACTTCTATAACTTAGCCGTTCTTTTTCTCCTCCCTTCGATTTCATTCTAACAATCTAATCAGCCCTTTTCTTCCCTCCTCTCCTCATTATAGTTAACAAAAGATTTTGTGAAAAATGAGAAGACTAACACTTGTTGCAATCTTCCTGTTTGTGTTGATTACGTCGGTCATGCTAGTTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGGTTAATATAAACGAGCAGAGAGAGCAGGAGATCAATGAGAATGGAAAGGCTAAAAATAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCCTAGAAGAGATGTGGATTGTTGGAGTACTGCAAAACAAAGTACAAACTAATGTAGATATAAACAATAATAGTGAGCCGGCCAGATGTTTGTGTATGTAAATAAATAACTAAGACCTTGGTTGGTAACCATTCCCGGACTAGTTAGTTATAGTACTTCACATCTTTTTGTTCTGTTTTTGTAATATATGATGGAGAAAGAACTTCTTGTTTTATTAGTAAATGATAAATATTAGTCTTGGAAGATTATGTTCGGTTATTTTCTAACTTGTCTGTGAAACTAAAGCAAAATTTGCTTAAAGGAAATAAACATTTTTAATTCTCCTGCCCTGTTTGATAA

mRNA sequence

CCTCATTTCCACGAAGTACTTCAATTACACAAGTCCCAATAACAACAGAAAATAAACTTCTATAACTTAGCCGTTCTTTTTCTCCTCCCTTCGATTTCATTCTAACAATCTAATCAGCCCTTTTCTTCCCTCCTCTCCTCATTATAGTTAACAAAAGATTTTGTGAAAAATGAGAAGACTAACACTTGTTGCAATCTTCCTGTTTGTGTTGATTACGTCGGTCATGCTAGTTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGGTTAATATAAACGAGCAGAGAGAGCAGGAGATCAATGAGAATGGAAAGGCTAAAAATAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCCTAGAAGAGATGTGGATTGTTGGAGTACTGCAAAACAAAGTACAAACTAATGTAGATATAAACAATAATAGTGAGCCGGCCAGATGTTTGTGTATGTAAATAAATAACTAAGACCTTGGTTGGTAACCATTCCCGGACTAGTTAGTTATAGTACTTCACATCTTTTTGTTCTGTTTTTGTAATATATGATGGAGAAAGAACTTCTTGTTTTATTAGTAAATGATAAATATTAGTCTTGGAAGATTATGTTCGGTTATTTTCTAACTTGTCTGTGAAACTAAAGCAAAATTTGCTTAAAGGAAATAAACATTTTTAATTCTCCTGCCCTGTTTGATAA

Coding sequence (CDS)

ATGAGAAGACTAACACTTGTTGCAATCTTCCTGTTTGTGTTGATTACGTCGGTCATGCTAGTTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGGTTAATATAAACGAGCAGAGAGAGCAGGAGATCAATGAGAATGGAAAGGCTAAAAATAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCCTAGAAGAGATGTGGATTGTTGGAGTACTGCAAAACAAAGTACAAACTAA

Protein sequence

MRRLTLVAIFLFVLITSVMLVEGTTLRSPRRLVNINEQREQEINENGKAKNRRPNDSGEYNHHGCPRRDVDCWSTAKQSTN

Homology

[Close]

BLAST of MELO.jh026224.1 vs. NCBI nr
Match: KGN64824.1 (hypothetical protein Csa_022834 [Cucumis sativus])

HSP 1 Score: 129 bits (325), Expect = 3.06e-37
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MRRLTLVAIFLFVLITSVMLVEGTTLRSPRRLVNINEQREQEINENGKAKNRRPNDSGEY 60
          MRRLTL AI + VLITSVML+EGTTLRSPRRL++IN+QRE+EINEN KAK RRPNDSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTAKQST 80
          NHHGC RRDVDCWS AKQST
Sbjct: 61 NHHGCLRRDVDCWSNAKQST 80

[Close]

BLAST of MELO.jh026224.1 vs. ExPASy TrEMBL
Match: A0A0A0LV16 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 1.48e-37
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MRRLTLVAIFLFVLITSVMLVEGTTLRSPRRLVNINEQREQEINENGKAKNRRPNDSGEY 60
          MRRLTL AI + VLITSVML+EGTTLRSPRRL++IN+QRE+EINEN KAK RRPNDSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTAKQST 80
          NHHGC RRDVDCWS AKQST
Sbjct: 61 NHHGCLRRDVDCWSNAKQST 80

The following BLAST results are available for this feature:

BLAST of MELO.jh026224.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64824.1	3.06e-37	83.75	hypothetical protein Csa_022834 [Cucumis sativus]	[more]

BLAST of MELO.jh026224.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh026224.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV16	1.48e-37	83.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1	[more]

BLAST of MELO.jh026224.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh026224.1.t1	MELO.jh026224.1.t1	mRNA