MELO.jh026218.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh026218.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon gag protein
Location	chr12: 6515958 .. 6519495 (-)
RNA-Seq Expression	MELO.jh026218.1
Synteny	MELO.jh026218.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTTCACCCCGATACGAGTCCAAGCCACTGAAATCACTTAAATCAGAGTTATAACGAAGAAGAACGGTAAAAAACAAGTTCAAGGGCAAAACCAGAAAATTGGAAAAGATCGGACGAACCAGATCGCACTACGTGGCATCACCAGATCACACCACGCGTCCACCTCAAAGGCACGTGTTCGATCCCCAGGCGCGCTCCTATTTTTCCTTTCATTTTTTCGCACGACCCAGAAACTCGATCCGGCAACCCGATCCACGAACCAGTTGGCGACCCGCGTCTAGTCCGCCACATGTCGAGCCCTCGTCCGCGCGCGCCTCTCCCCTATCGTGAGTTCGAATCTCAGCAGCCGCGTTTCCTTTTTTTATTTTCAATTGGGCCAACCCAAGCCCATTCGTGATCCAGTTCATCATTTTCCCCAAAATTAACTGCAAAATGGTAGTTTTTAACCTAGTTCCATTTTTTTCTCCCATTTTCTCTTCTATAAAATCCCTCATTTTTTTGGGACATAAGAAATTCCAATGTAAAAAAAATCCTCTTTCTCATTCAATTCTTGTAGCAAAATTTTTGAAACTTTATCAATAAAAGATTACTTTTGTCAAAGAAATAGATTCTTTCCTCAACAACTCTTCAAGAATTTCATCAATCTTCATGGGCTAAGGTAATCTTTTGAGACTTTTTCTCAGGTTAAATTACCATGTTTTCTTTAAGAATTAAATTCTTTTCTATATCTTTTCAATTTTTTATTTGATTGCTTGTTTCCTTTTGCAATTTCTTTTGAAATTTCAATAAAATAAATAAGTTTTTCCCATCAATTTTTCATTGAAATTTCTTTACAAACTCTTAAAGTGCTGAACTTAAATTTTGATTTGCAATGGTTTGTTATGATGAATTAATTGTTGAGATTGTCCTTAATTTTCTACTAATTGATTCTTACATAACAAGTTTGAAGTGGGCATTAATTTTGCTAAGGGTAGTGGCTATCCCCTCCTTAGCAAATCTTGAATAGGATGAATTTTGCCTCAATTTGAACATGCTTTGGTTGCTGAGATTGATCATGTTTTAATAGAGATTTGGTTACTTTTTTTTTTGTAAAAATTCCATTCTTGCATATTCAAGAAAAGATTAATTGATCTTTTTTTTTTCAATGATAAGAAACATGGTAATTGCCCAAGAAAAAGTCCCTCTACTAAACTTGAAAGAAAAACTTTACTTGAATTACTTGTTGTCACTAATCATCCCTTAATGCTTGTTCTTTATTATAGTTCAAGAATTACTTCCACAACCCCCCTTTGTGTTTTTAATTTTCTTTTAGATCCTTAAGCTACTAATCGACCTTGTTTACAAATTTTGAAATTTTGAATCTTAAATGCTCTCTAGTGTTCGACACCCTTCTTCCCCATACTACTCTCAATTTCCACAAAGGTAAGAAGGGTTAAAAAGATAACTTTGAAAGGTAATTGAGGTAATCCCTAACCCTCAAATTTCATCTAGTCTTTCTCTATTCTTGTATTCTTTTATTTTAGACTAGGAATAAATTCTTGTTCTGTATACTTACATCCATAACAACCCATCATTTTGATAACAACTTACCTCAAGAAAAAAAATCCCATCTTTCAAAAATGGCATCGTTGTCGGAGAGCACGGTGTAGTTTTCAAGACTTTTTGATTTCAAACTGTCTTTTAGAGCTTCTTGATTCTTATATTCATTTTGTAAAAAAAAAAAAGAAAAAAATATAGGCATAAAGAGATCGTGTAGAATTTTTTGTGTTCTCTCTTCTCTTTTCTTGCATGACTCGTTCTTCAAATTTAGAATTTCCTTACCTTGAAGATTTAAATAGGGAGGTTCATAGAATTAGAAGAGAAAGGAGAGAAGAGAATAGCATCCCCAATCTTTCTAACCAAGAACCTTTAAGAGATTAAGAACCTAGCCTAGATTCTCCTTTAGATCCAAACCTTGGTAGAGGAAATATGGGAGAAGTTAGAGAAAAGGCCCTTAGAGAGCTTGCCGAGCCCGATGAAGACTAAAGACCTCTTTGTATAGTCATACCTCCAACCAGTACTCAACCTTTTGAATTAAAACTGGGACTTATCCATCTTTTGCCCATCTTTAAAGGAAGTTCCGGAGAGGACCCACACAAACATCTTAAGGATTTTCATATGGTTTGTGATTCCATGAGGCCTCACGGCATCTCGAAAGAACAACTAAATTTACGAGCCTTTCCTTTTTCCCTTACGGATGTAGCAAAGACATGGCTCTACTACTTAGAACCGGGTTCCATAACCACTTGGAGTAGTCTAAAAAAGAAATTCTTAGAGAATTTTTCCCCACCTCTAGAGCAACAATATTAGGAAAGAAATTTATGGGATAAGACAAGCCTTTGGAGAATCCCTTTTGGAATACTGGGAAACATTCAAAGAGCTTTGTGCTAGCTTTCCTCACTATCATATTTTTGACCCTTTCTTTAATTCAATATTTTTACTTCGTTCTTTTGTCTTCCAACAGGAATACGGTAGATGCGGCGCCGGGAGGAGCTCTAACCGACAAGACCCCATCGAAGCACGGGAGCTCATTTCAAGAATGGTAGAAAATTCTTAAAGCTTTGGGAATAGAGCATTGGAGCTTGACAATTCTCTAACAAAAGAGGTAAGTGAATTAAAATCACAAATGTTAAATATGACCATTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCAAACGACAAATGTCCCGAGGTGATTGAGGATGTAAACATTGTTCAAAAATACGACCCCCACGGTAATACATACAATTCGGGGTGGAGAGACAACCCAAACTTAAGATGGGGGAATGACAACCAAAATCATACACAAGCACCACCCACCTCTTCAAACCAAGGTACGAATCTTGAAGATATTATCAAAGCTTTGGCAACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACCGTCATAAGCAAGATGGATGGGAAAGGCAAACTTCTGGCTCAACCGGACCATGCTAATGTAAGTGTCATTTCACTAAAGAGTGGTAAGATTCTTGACACCCCCACCACCAAAGAGAAAAAGGTAACTTCCAAACCCTTACCTCTTAATAGTAAGAATGAGTCCAAGGAAGAAAAGGATGAAACAAACCCCTCACCATCTAATTCTAAAGATGATAAATCTCCTCTTAATGATTTTACTCCTTACATACCCAAACCTCCTTTTCCCTCTAGGTTGGCTTTAAAAAAGAAGAAAACACCCGAGGAGGAAGAACTCTTGGAGATGTTTAGAAAGGTGCAAATCAACTTGTCCCTTCTCGATGCAATCCAACAAGTCCCGAGGTATGCAAAGTTTCAAAAGGAGTTGTGTACCAACAAGAGGAAAACAAAAGAAAGAGCAATGGTAAGTCAAAATGTTTCGGCTCTTCTAAAGAGTAATAATCCGAAAAAATGCAATGACCCCGGTATGTTTTCTCTACCTTGTGTAA

mRNA sequence

ATGAAACTTCACCCCGATACGAGTCCAAGCCACTGAAATCACTTAAATCAGAGTTATAACGAAGAAGAACGGTAAAAAACAAGTTCAAGGGCAAAACCAGAAAATTGGAAAAGATCGGACGAACCAGATCGCACTACGTGGCATCACCAGATCACACCACGCGTCCACCTCAAAGGCACGTGTTCGATCCCCAGGCGCGCTCCTATTTTTCCTTTCATTTTTTCGCACGACCCAGAAACTCGATCCGGCAACCCATTCTTTCCTCAACAACTCTTCAAGAATTTCATCAATCTTCATGGGCTAAGGAATACGGTAGATGCGGCGCCGGGAGGAGCTCTAACCGACAAGACCCCATCGAAGCACGGGAGCTCATTTCAAGAATGGTAGAAAATTCTTAAAGCTTTGGGAATAGAGCATTGGAGCTTGACAATTCTCTAACAAAAGAGGTAAGTGAATTAAAATCACAAATGTTAAATATGACCATTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCAAACGACAAATGTCCCGAGGTGATTGAGGATGTAAACATTGTTCAAAAATACGACCCCCACGGTAATACATACAATTCGGGGTGGAGAGACAACCCAAACTTAAGATGGGGGAATGACAACCAAAATCATACACAAGCACCACCCACCTCTTCAAACCAAGGTACGAATCTTGAAGATATTATCAAAGCTTTGGCAACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACCGTCATAAGCAAGATGGATGGGAAAGGCAAACTTCTGGCTCAACCGGACCATGCTAATGTAAGTGTCATTTCACTAAAGAGTGGTAAGATTCTTGACACCCCCACCACCAAAGAGAAAAAGGTAACTTCCAAACCCTTACCTCTTAATAGTAAGAATGAGTCCAAGGAAGAAAAGGATGAAACAAACCCCTCACCATCTAATTCTAAAGATGATAAATCTCCTCTTAATGATTTTACTCCTTACATACCCAAACCTCCTTTTCCCTCTAGGTTGGCTTTAAAAAAGAAGAAAACACCCGAGGAGGAAGAACTCTTGGAGATGTTTAGAAAGGTGCAAATCAACTTGTCCCTTCTCGATGCAATCCAACAAGTCCCGAGGTATGCAAAGTTTCAAAAGGAGTTGTGTACCAACAAGAGGAAAACAAAAGAAAGAGCAATGGTAAGTCAAAATGTTTCGGCTCTTCTAAAGAGTAATAATCCGAAAAAATGCAATGACCCCGGTATGTTTTCTCTACCTTGTGTAA

Coding sequence (CDS)

ATGTTAAATATGACCATTCTTCTTACTTCTTTTGTACAAGGTACTCCTCTTAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCAAACGACAAATGTCCCGAGGTGATTGAGGATGTAAACATTGTTCAAAAATACGACCCCCACGGTAATACATACAATTCGGGGTGGAGAGACAACCCAAACTTAAGATGGGGGAATGACAACCAAAATCATACACAAGCACCACCCACCTCTTCAAACCAAGGTACGAATCTTGAAGATATTATCAAAGCTTTGGCAACTAACACTCTTTCTTTTCAACAAGAGATGAAACAACAAATGACTCAACTTACTACCGTCATAAGCAAGATGGATGGGAAAGGCAAACTTCTGGCTCAACCGGACCATGCTAATGTAAGTGTCATTTCACTAAAGAGTGGTAAGATTCTTGACACCCCCACCACCAAAGAGAAAAAGGTAACTTCCAAACCCTTACCTCTTAATAGTAAGAATGAGTCCAAGGAAGAAAAGGATGAAACAAACCCCTCACCATCTAATTCTAAAGATGATAAATCTCCTCTTAATGATTTTACTCCTTACATACCCAAACCTCCTTTTCCCTCTAGGTTGGCTTTAAAAAAGAAGAAAACACCCGAGGAGGAAGAACTCTTGGAGATGTTTAGAAAGGTGCAAATCAACTTGTCCCTTCTCGATGCAATCCAACAAGTCCCGAGGTATGCAAAGTTTCAAAAGGAGTTGTGTACCAACAAGAGGAAAACAAAAGAAAGAGCAATGGTAAGTCAAAATGTTTCGGCTCTTCTAAAGAGTAATAATCCGAAAAAATGCAATGACCCCGGTATGTTTTCTCTACCTTGTGTA

Protein sequence

MLNMTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGKGKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSPSNSKDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVPRYAKFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPGMFSLPCV

Homology

[Close]

BLAST of MELO.jh026218.1 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 546 bits (1406), Expect = 9.70e-195
Identity = 279/286 (97.55%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 4   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 63
           MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 64  NLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 123
           NLRWGNDNQ HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120

Query: 124 GKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSPSNS 183
           GKLLAQPDHANVSVISL+S KILDTPTTKEKKVTSKPLPLNSKNESKEEK ETNPSPSNS
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180

Query: 184 KDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVPRYA 243
           K+DKSPLNDFTPYIPKPPFPSRLALKKK+TPEEEELLEMFRKVQINLSLLDAIQQVPRYA
Sbjct: 181 KNDKSPLNDFTPYIPKPPFPSRLALKKKETPEEEELLEMFRKVQINLSLLDAIQQVPRYA 240

Query: 244 KFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPGMFSLPCV 289
           KFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCN PGMFSLPCV
Sbjct: 241 KFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNGPGMFSLPCV 286

[Close]

BLAST of MELO.jh026218.1 vs. NCBI nr
Match: XP_008465471.1 (PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo])

HSP 1 Score: 496 bits (1278), Expect = 1.34e-173
Identity = 257/289 (88.93%), Postives = 267/289 (92.39%), Query Frame = 0


Query: 1   MLNMTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWR 60
           MLNMT LLTSFV GTPLKVTKCGVCGLVGH NDKCPEVIEDVNIV++YDPHGNTYNSGWR
Sbjct: 55  MLNMTTLLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWR 114

Query: 61  DNPNLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKM 120
           DNPNLRWGNDNQ HT AP TSS QGTNLEDIIKALATNTLSFQQEMKQQMTQLTT  SKM
Sbjct: 115 DNPNLRWGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKM 174

Query: 121 DGKGKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSP 180
           DGKGKL AQP HANVSVISL+SGKILDTPT+KEKKVTSKPLPLNSKNESKEEK ETNPSP
Sbjct: 175 DGKGKLSAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSP 234

Query: 181 SNSKDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVP 240
           SNSK+DKSPLNDFTPYIPKPPFPSRL  K+K+TP+EEELLEMFRKVQINL LLDAIQQVP
Sbjct: 235 SNSKNDKSPLNDFTPYIPKPPFPSRLTPKEKETPKEEELLEMFRKVQINLPLLDAIQQVP 294

Query: 241 RYAKFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPGMFSLPCV 289
            YAKF KELCTNKRKTKER MV+QNVSALLKSN P+KCNDPG FS P V
Sbjct: 295 WYAKFLKELCTNKRKTKERPMVTQNVSALLKSNIPEKCNDPGSFSQPSV 343

[Close]

BLAST of MELO.jh026218.1 vs. NCBI nr
Match: TYK14267.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 489 bits (1260), Expect = 1.21e-168
Identity = 253/286 (88.46%), Postives = 264/286 (92.31%), Query Frame = 0


Query: 1   MLNMTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWR 60
           MLNMT LLTSFV GTPLKVTKCGVCGLVGH NDKCPEVIEDVNIV++YDPHGNTYNSGWR
Sbjct: 69  MLNMTTLLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWR 128

Query: 61  DNPNLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKM 120
           DNPNLRWGNDNQ HT AP TSS QGTNLEDIIKALATNTLSFQQEMKQQMTQLTT  SKM
Sbjct: 129 DNPNLRWGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKM 188

Query: 121 DGKGKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSP 180
           DGKGKL AQP HANVSVISL+SGKILDTPT+KEKKVTSKPLPLNSKNESKEEK ETNPSP
Sbjct: 189 DGKGKLSAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSP 248

Query: 181 SNSKDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVP 240
           SNSK+DKSPLNDFTPYIPKPPFPSRL  K+K+TP+EEELLEMFRKVQINL LLDAIQQVP
Sbjct: 249 SNSKNDKSPLNDFTPYIPKPPFPSRLTPKEKETPKEEELLEMFRKVQINLPLLDAIQQVP 308

Query: 241 RYAKFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPGMFSL 286
            YAKF KELCTNKRKTKER MV+QNVSALLKSN P+KCNDPG   +
Sbjct: 309 WYAKFLKELCTNKRKTKERPMVTQNVSALLKSNIPEKCNDPGSLGV 354

[Close]

BLAST of MELO.jh026218.1 vs. NCBI nr
Match: KAA0061315.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 489 bits (1260), Expect = 9.83e-168
Identity = 253/286 (88.46%), Postives = 264/286 (92.31%), Query Frame = 0


Query: 1   MLNMTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWR 60
           MLNMT LLTSFV GTPLKVTKCGVCGLVGH NDKCPEVIEDVNIV++YDPHGNTYNSGWR
Sbjct: 134 MLNMTTLLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWR 193

Query: 61  DNPNLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKM 120
           DNPNLRWGNDNQ HT AP TSS QGTNLEDIIKALATNTLSFQQEMKQQMTQLTT  SKM
Sbjct: 194 DNPNLRWGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKM 253

Query: 121 DGKGKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSP 180
           DGKGKL AQP HANVSVISL+SGKILDTPT+KEKKVTSKPLPLNSKNESKEEK ETNPSP
Sbjct: 254 DGKGKLSAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSP 313

Query: 181 SNSKDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVP 240
           SNSK+DKSPLNDFTPYIPKPPFPSRL  K+K+TP+EEELLEMFRKVQINL LLDAIQQVP
Sbjct: 314 SNSKNDKSPLNDFTPYIPKPPFPSRLTPKEKETPKEEELLEMFRKVQINLPLLDAIQQVP 373

Query: 241 RYAKFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPGMFSL 286
            YAKF KELCTNKRKTKER MV+QNVSALLKSN P+KCNDPG   +
Sbjct: 374 WYAKFLKELCTNKRKTKERPMVTQNVSALLKSNIPEKCNDPGSLGV 419

[Close]

BLAST of MELO.jh026218.1 vs. NCBI nr
Match: KAA0060347.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22096.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 466 bits (1200), Expect = 4.07e-161
Identity = 241/279 (86.38%), Postives = 257/279 (92.11%), Query Frame = 0


Query: 4   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 63
           MT  LTSFVQGTPLKVTKCGVCGLVGH NDKCP+VIEDVNIV++Y+  GNTYNSGWRDNP
Sbjct: 1   MTTFLTSFVQGTPLKVTKCGVCGLVGHSNDKCPKVIEDVNIVRRYNLQGNTYNSGWRDNP 60

Query: 64  NLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 123
           NLRWGNDNQ HTQAP TSSNQGTNL+DIIKALATN +SFQQEMK+QMTQ+TT ISKMDGK
Sbjct: 61  NLRWGNDNQKHTQAPSTSSNQGTNLKDIIKALATNNVSFQQEMKRQMTQITTAISKMDGK 120

Query: 124 GKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSPSNS 183
           GKL AQP+HANVS ISL+SGKILD+P T+EKKVTSKPLPLNSKNE KEEK ETNPS SNS
Sbjct: 121 GKLPAQPNHANVSAISLRSGKILDSPATEEKKVTSKPLPLNSKNEFKEEKVETNPSSSNS 180

Query: 184 KDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVPRYA 243
           K+DKSPLNDFTPYIPKPPFP RLA KKK+TP+EEELLEMFRKVQINL LLDAIQQVP YA
Sbjct: 181 KNDKSPLNDFTPYIPKPPFPYRLAPKKKETPKEEELLEMFRKVQINLPLLDAIQQVPTYA 240

Query: 244 KFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPG 282
           KF KELCTNKRKTKER MVSQNVSALLKSN P+KCNDPG
Sbjct: 241 KFLKELCTNKRKTKERPMVSQNVSALLKSNIPEKCNDPG 279

[Close]

BLAST of MELO.jh026218.1 vs. ExPASy TrEMBL
Match: A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 546 bits (1406), Expect = 4.69e-195
Identity = 279/286 (97.55%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 4   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 63
           MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP
Sbjct: 1   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 60

Query: 64  NLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 123
           NLRWGNDNQ HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK
Sbjct: 61  NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 120

Query: 124 GKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSPSNS 183
           GKLLAQPDHANVSVISL+S KILDTPTTKEKKVTSKPLPLNSKNESKEEK ETNPSPSNS
Sbjct: 121 GKLLAQPDHANVSVISLRSDKILDTPTTKEKKVTSKPLPLNSKNESKEEKGETNPSPSNS 180

Query: 184 KDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVPRYA 243
           K+DKSPLNDFTPYIPKPPFPSRLALKKK+TPEEEELLEMFRKVQINLSLLDAIQQVPRYA
Sbjct: 181 KNDKSPLNDFTPYIPKPPFPSRLALKKKETPEEEELLEMFRKVQINLSLLDAIQQVPRYA 240

Query: 244 KFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPGMFSLPCV 289
           KFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCN PGMFSLPCV
Sbjct: 241 KFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNGPGMFSLPCV 286

[Close]

BLAST of MELO.jh026218.1 vs. ExPASy TrEMBL
Match: A0A1S3CQF6 (uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=4 SV=1)

HSP 1 Score: 496 bits (1278), Expect = 6.49e-174
Identity = 257/289 (88.93%), Postives = 267/289 (92.39%), Query Frame = 0


Query: 1   MLNMTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWR 60
           MLNMT LLTSFV GTPLKVTKCGVCGLVGH NDKCPEVIEDVNIV++YDPHGNTYNSGWR
Sbjct: 55  MLNMTTLLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWR 114

Query: 61  DNPNLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKM 120
           DNPNLRWGNDNQ HT AP TSS QGTNLEDIIKALATNTLSFQQEMKQQMTQLTT  SKM
Sbjct: 115 DNPNLRWGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKM 174

Query: 121 DGKGKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSP 180
           DGKGKL AQP HANVSVISL+SGKILDTPT+KEKKVTSKPLPLNSKNESKEEK ETNPSP
Sbjct: 175 DGKGKLSAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSP 234

Query: 181 SNSKDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVP 240
           SNSK+DKSPLNDFTPYIPKPPFPSRL  K+K+TP+EEELLEMFRKVQINL LLDAIQQVP
Sbjct: 235 SNSKNDKSPLNDFTPYIPKPPFPSRLTPKEKETPKEEELLEMFRKVQINLPLLDAIQQVP 294

Query: 241 RYAKFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPGMFSLPCV 289
            YAKF KELCTNKRKTKER MV+QNVSALLKSN P+KCNDPG FS P V
Sbjct: 295 WYAKFLKELCTNKRKTKERPMVTQNVSALLKSNIPEKCNDPGSFSQPSV 343

[Close]

BLAST of MELO.jh026218.1 vs. ExPASy TrEMBL
Match: A0A5D3CQR9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00090 PE=4 SV=1)

HSP 1 Score: 489 bits (1260), Expect = 5.87e-169
Identity = 253/286 (88.46%), Postives = 264/286 (92.31%), Query Frame = 0


Query: 1   MLNMTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWR 60
           MLNMT LLTSFV GTPLKVTKCGVCGLVGH NDKCPEVIEDVNIV++YDPHGNTYNSGWR
Sbjct: 69  MLNMTTLLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWR 128

Query: 61  DNPNLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKM 120
           DNPNLRWGNDNQ HT AP TSS QGTNLEDIIKALATNTLSFQQEMKQQMTQLTT  SKM
Sbjct: 129 DNPNLRWGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKM 188

Query: 121 DGKGKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSP 180
           DGKGKL AQP HANVSVISL+SGKILDTPT+KEKKVTSKPLPLNSKNESKEEK ETNPSP
Sbjct: 189 DGKGKLSAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSP 248

Query: 181 SNSKDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVP 240
           SNSK+DKSPLNDFTPYIPKPPFPSRL  K+K+TP+EEELLEMFRKVQINL LLDAIQQVP
Sbjct: 249 SNSKNDKSPLNDFTPYIPKPPFPSRLTPKEKETPKEEELLEMFRKVQINLPLLDAIQQVP 308

Query: 241 RYAKFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPGMFSL 286
            YAKF KELCTNKRKTKER MV+QNVSALLKSN P+KCNDPG   +
Sbjct: 309 WYAKFLKELCTNKRKTKERPMVTQNVSALLKSNIPEKCNDPGSLGV 354

[Close]

BLAST of MELO.jh026218.1 vs. ExPASy TrEMBL
Match: A0A5A7V668 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6213G00110 PE=4 SV=1)

HSP 1 Score: 489 bits (1260), Expect = 4.76e-168
Identity = 253/286 (88.46%), Postives = 264/286 (92.31%), Query Frame = 0


Query: 1   MLNMTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWR 60
           MLNMT LLTSFV GTPLKVTKCGVCGLVGH NDKCPEVIEDVNIV++YDPHGNTYNSGWR
Sbjct: 134 MLNMTTLLTSFVLGTPLKVTKCGVCGLVGHQNDKCPEVIEDVNIVRRYDPHGNTYNSGWR 193

Query: 61  DNPNLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKM 120
           DNPNLRWGNDNQ HT AP TSS QGTNLEDIIKALATNTLSFQQEMKQQMTQLTT  SKM
Sbjct: 194 DNPNLRWGNDNQKHTHAPSTSSTQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTTTSKM 253

Query: 121 DGKGKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSP 180
           DGKGKL AQP HANVSVISL+SGKILDTPT+KEKKVTSKPLPLNSKNESKEEK ETNPSP
Sbjct: 254 DGKGKLSAQPGHANVSVISLRSGKILDTPTSKEKKVTSKPLPLNSKNESKEEKVETNPSP 313

Query: 181 SNSKDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVP 240
           SNSK+DKSPLNDFTPYIPKPPFPSRL  K+K+TP+EEELLEMFRKVQINL LLDAIQQVP
Sbjct: 314 SNSKNDKSPLNDFTPYIPKPPFPSRLTPKEKETPKEEELLEMFRKVQINLPLLDAIQQVP 373

Query: 241 RYAKFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPGMFSL 286
            YAKF KELCTNKRKTKER MV+QNVSALLKSN P+KCNDPG   +
Sbjct: 374 WYAKFLKELCTNKRKTKERPMVTQNVSALLKSNIPEKCNDPGSLGV 419

[Close]

BLAST of MELO.jh026218.1 vs. ExPASy TrEMBL
Match: A0A5A7V0L2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00850 PE=4 SV=1)

HSP 1 Score: 466 bits (1200), Expect = 1.97e-161
Identity = 241/279 (86.38%), Postives = 257/279 (92.11%), Query Frame = 0


Query: 4   MTILLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNP 63
           MT  LTSFVQGTPLKVTKCGVCGLVGH NDKCP+VIEDVNIV++Y+  GNTYNSGWRDNP
Sbjct: 1   MTTFLTSFVQGTPLKVTKCGVCGLVGHSNDKCPKVIEDVNIVRRYNLQGNTYNSGWRDNP 60

Query: 64  NLRWGNDNQNHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGK 123
           NLRWGNDNQ HTQAP TSSNQGTNL+DIIKALATN +SFQQEMK+QMTQ+TT ISKMDGK
Sbjct: 61  NLRWGNDNQKHTQAPSTSSNQGTNLKDIIKALATNNVSFQQEMKRQMTQITTAISKMDGK 120

Query: 124 GKLLAQPDHANVSVISLKSGKILDTPTTKEKKVTSKPLPLNSKNESKEEKDETNPSPSNS 183
           GKL AQP+HANVS ISL+SGKILD+P T+EKKVTSKPLPLNSKNE KEEK ETNPS SNS
Sbjct: 121 GKLPAQPNHANVSAISLRSGKILDSPATEEKKVTSKPLPLNSKNEFKEEKVETNPSSSNS 180

Query: 184 KDDKSPLNDFTPYIPKPPFPSRLALKKKKTPEEEELLEMFRKVQINLSLLDAIQQVPRYA 243
           K+DKSPLNDFTPYIPKPPFP RLA KKK+TP+EEELLEMFRKVQINL LLDAIQQVP YA
Sbjct: 181 KNDKSPLNDFTPYIPKPPFPYRLAPKKKETPKEEELLEMFRKVQINLPLLDAIQQVPTYA 240

Query: 244 KFQKELCTNKRKTKERAMVSQNVSALLKSNNPKKCNDPG 282
           KF KELCTNKRKTKER MVSQNVSALLKSN P+KCNDPG
Sbjct: 241 KFLKELCTNKRKTKERPMVSQNVSALLKSNIPEKCNDPG 279

The following BLAST results are available for this feature:

BLAST of MELO.jh026218.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902871.1	9.70e-195	97.55	PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]	[more]
XP_008465471.1	1.34e-173	88.93	PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo]	[more]
TYK14267.1	1.21e-168	88.46	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0061315.1	9.83e-168	88.46	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0060347.1	4.07e-161	86.38	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK22096.1 retrotranspos...	[more]

BLAST of MELO.jh026218.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh026218.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E3R2	4.69e-195	97.55	uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=...	[more]
A0A1S3CQF6	6.49e-174	88.93	uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=...	[more]
A0A5D3CQR9	5.87e-169	88.46	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7V668	4.76e-168	88.46	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7V0L2	1.97e-161	86.38	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of MELO.jh026218.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..205
None	No IPR available	PANTHER	PTHR24559:SF334	SUBFAMILY NOT NAMED	coord: 20..288
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 20..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh026218.1.t1	MELO.jh026218.1.t1	mRNA