MELO.jh025890.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh025890.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPhotosystem II protein D1
Locationchr12: 959965 .. 960347 (+)
RNA-Seq ExpressionMELO.jh025890.1
SyntenyMELO.jh025890.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAGCACAGAAAATAAATCTACTAATTCAGGTTATAGATACGGTCAAGAAGAAGAAACTGAGAATATCGTAGCTGTTCATGGTTATTTTGGTCGATTGCTCTTCTATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTACTTGGCCTGTAGTAGGTATCTGGTTCACCGTTTTAGGTATTAGCACTATGGCTTTCAAAAAATGGTTTTAATTTCAACCAATCTATAATTGATAGTTAAGGTCGTGTAATTCATACCTGGGCTGAGATTCTTAATCATGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCTGTTGAAGTTCCATCTATCAATGAATAA

mRNA sequence

GGAAAGCACAGAAAATAAATCTACTAATTCAGGTTATAGATACGGTCAAGAAGAAGAAACTGAGAATATCGTAGCTGTTCATGGTTATTTTGGTCGATTGCTCTTCTATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTACTTGGCCTGTAGTAGGTATCTGGTTCACCGTTTTAGGTATTAGCACTATGGCTTTCAAAAAATGGTTTTAATTTCAACCAATCTATAATTGATAGTTAAGGTCGTGTAATTCATACCTGGGCTGAGATTCTTAATCATGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCTGTTGAAGTTCCATCTATCAATGAATAA

Coding sequence (CDS)

ATGGAAGTAATGCATGAACGTAATGCTCACAACTTCCCTCTAGATCTAGCTGCTGTTGAAGTTCCATCTATCAATGAATAA

Protein sequence

MEVMHERNAHNFPLDLAAVEVPSINE
Homology
[Close]
BLAST of MELO.jh025890.1 vs. NCBI nr
Match: AHA94278.1 (PsbA, partial [Pontederia crassipes])

HSP 1 Score: 55.1 bits (131), Expect = 3.48e-09
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MEVMHERNAHNFPLDLAAVEVPSIN 25
          MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 2  MEVMHERNAHNFPLDLAAVEVPSIN 26

[Close]
BLAST of MELO.jh025890.1 vs. NCBI nr
Match: BAF43597.1 (psbA, partial [Ranunculus japonicus])

HSP 1 Score: 55.1 bits (131), Expect = 3.60e-09
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MEVMHERNAHNFPLDLAAVEVPSIN 25
          MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 5  MEVMHERNAHNFPLDLAAVEVPSIN 29

[Close]
BLAST of MELO.jh025890.1 vs. NCBI nr
Match: QYL02808.1 (PsbA [Prunus armeniaca])

HSP 1 Score: 55.1 bits (131), Expect = 6.66e-09
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MEVMHERNAHNFPLDLAAVEVPSIN 25
          MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 36 MEVMHERNAHNFPLDLAAVEVPSIN 60

[Close]
BLAST of MELO.jh025890.1 vs. NCBI nr
Match: AHI88473.1 (PsbA [Prunus armeniaca] >AHI88474.1 PsbA [Prunus armeniaca] >AHI88475.1 PsbA [Prunus armeniaca] >AHI88476.1 PsbA [Prunus armeniaca] >AHI88477.1 PsbA [Prunus armeniaca])

HSP 1 Score: 55.1 bits (131), Expect = 6.66e-09
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MEVMHERNAHNFPLDLAAVEVPSIN 25
          MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 36 MEVMHERNAHNFPLDLAAVEVPSIN 60

[Close]
BLAST of MELO.jh025890.1 vs. NCBI nr
Match: QYL02797.1 (PsbA [Prunus armeniaca])

HSP 1 Score: 55.1 bits (131), Expect = 6.66e-09
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MEVMHERNAHNFPLDLAAVEVPSIN 25
          MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 36 MEVMHERNAHNFPLDLAAVEVPSIN 60

[Close]
BLAST of MELO.jh025890.1 vs. ExPASy Swiss-Prot
Match: Q2QDA8 (Photosystem II protein D1 OS=Cucumis sativus OX=3659 GN=psbA PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   MEVMHERNAHNFPLDLAAVEVPSIN 26
           MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 328 MEVMHERNAHNFPLDLAAVEVPSIN 352

[Close]
BLAST of MELO.jh025890.1 vs. ExPASy Swiss-Prot
Match: P10510 (Photosystem II protein D1 OS=Secale cereale OX=4550 GN=psbA PE=1 SV=3)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   MEVMHERNAHNFPLDLAAVEVPSIN 26
           MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 328 MEVMHERNAHNFPLDLAAVEVPSIN 352

[Close]
BLAST of MELO.jh025890.1 vs. ExPASy Swiss-Prot
Match: P12463 (Photosystem II protein D1 OS=Triticum aestivum OX=4565 GN=psbA PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   MEVMHERNAHNFPLDLAAVEVPSIN 26
           MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 328 MEVMHERNAHNFPLDLAAVEVPSIN 352

[Close]
BLAST of MELO.jh025890.1 vs. ExPASy Swiss-Prot
Match: A1E9Y8 (Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-07
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   MEVMHERNAHNFPLDLAAVEVPSIN 26
           MEVMHERNAHNFPLDLAA+EVPSIN
Sbjct: 328 MEVMHERNAHNFPLDLAALEVPSIN 352

[Close]
BLAST of MELO.jh025890.1 vs. ExPASy Swiss-Prot
Match: P05337 (Photosystem II protein D1 OS=Hordeum vulgare OX=4513 GN=psbA PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.1e-07
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1   MEVMHERNAHNFPLDLAAVEVPSIN 26
           MEVMHERNAHNFPLDLAAVEVP+IN
Sbjct: 328 MEVMHERNAHNFPLDLAAVEVPAIN 352

[Close]
BLAST of MELO.jh025890.1 vs. ExPASy TrEMBL
Match: V5NYB5 (PsbA (Fragment) OS=Eichhornia crassipes OX=44947 GN=psbA PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.69e-09
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MEVMHERNAHNFPLDLAAVEVPSIN 25
          MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 2  MEVMHERNAHNFPLDLAAVEVPSIN 26

[Close]
BLAST of MELO.jh025890.1 vs. ExPASy TrEMBL
Match: A1IGY8 (PsbA protein (Fragment) OS=Ranunculus japonicus OX=286919 GN=psbA PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.74e-09
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MEVMHERNAHNFPLDLAAVEVPSIN 25
          MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 5  MEVMHERNAHNFPLDLAAVEVPSIN 29

[Close]
BLAST of MELO.jh025890.1 vs. ExPASy TrEMBL
Match: W6CR25 (PsbA OS=Prunus armeniaca OX=36596 GN=psbA PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.22e-09
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MEVMHERNAHNFPLDLAAVEVPSIN 25
          MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 36 MEVMHERNAHNFPLDLAAVEVPSIN 60

[Close]
BLAST of MELO.jh025890.1 vs. ExPASy TrEMBL
Match: A0A453LI97 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.22e-09
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MEVMHERNAHNFPLDLAAVEVPSIN 25
          MEVMHERNAHNFPLDLAAVEVPSIN
Sbjct: 36 MEVMHERNAHNFPLDLAAVEVPSIN 60

[Close]
BLAST of MELO.jh025890.1 vs. ExPASy TrEMBL
Match: V5NYE8 (PsbA (Fragment) OS=Kalanchoe pinnata OX=80913 GN=psbA PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.38e-09
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MEVMHERNAHNFPLDLAAVEVPSIN 25
          MEVMHERNAHNFPLDLAAVEVPS+N
Sbjct: 1  MEVMHERNAHNFPLDLAAVEVPSLN 25

[Close]
BLAST of MELO.jh025890.1 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-07
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 1   MEVMHERNAHNFPLDLAAVEVPSIN 26
           MEVMHERNAHNFPLDLAAVE PS N
Sbjct: 328 MEVMHERNAHNFPLDLAAVEAPSTN 352

The following BLAST results are available for this feature:
BLAST of MELO.jh025890.1 vs. NCBI nr
Match NameE-valueIdentityDescription
AHA94278.13.48e-09100.00PsbA, partial [Pontederia crassipes][more]
BAF43597.13.60e-09100.00psbA, partial [Ranunculus japonicus][more]
QYL02808.16.66e-09100.00PsbA [Prunus armeniaca][more]
AHI88473.16.66e-09100.00PsbA [Prunus armeniaca] >AHI88474.1 PsbA [Prunus armeniaca] >AHI88475.1 PsbA [Pr... [more]
QYL02797.16.66e-09100.00PsbA [Prunus armeniaca][more]
BLAST of MELO.jh025890.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QDA81.4e-07100.00Photosystem II protein D1 OS=Cucumis sativus OX=3659 GN=psbA PE=3 SV=1[more]
P105101.4e-07100.00Photosystem II protein D1 OS=Secale cereale OX=4550 GN=psbA PE=1 SV=3[more]
P124631.4e-07100.00Photosystem II protein D1 OS=Triticum aestivum OX=4565 GN=psbA PE=3 SV=2[more]
A1E9Y83.1e-0796.00Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1[more]
P053373.1e-0796.00Photosystem II protein D1 OS=Hordeum vulgare OX=4513 GN=psbA PE=3 SV=1[more]
BLAST of MELO.jh025890.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
V5NYB51.69e-09100.00PsbA (Fragment) OS=Eichhornia crassipes OX=44947 GN=psbA PE=4 SV=1[more]
A1IGY81.74e-09100.00PsbA protein (Fragment) OS=Ranunculus japonicus OX=286919 GN=psbA PE=4 SV=1[more]
W6CR253.22e-09100.00PsbA OS=Prunus armeniaca OX=36596 GN=psbA PE=3 SV=1[more]
A0A453LI973.22e-09100.00Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 S... [more]
V5NYE83.38e-0996.00PsbA (Fragment) OS=Kalanchoe pinnata OX=80913 GN=psbA PE=4 SV=1[more]
BLAST of MELO.jh025890.1 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00020.11.1e-0792.00photosystem II reaction center protein A [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh025890.1.t1MELO.jh025890.1.t1mRNA