MELO.jh025854.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh025854.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionprotein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like
Locationchr12: 525386 .. 526253 (-)
RNA-Seq ExpressionMELO.jh025854.1
SyntenyMELO.jh025854.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGGTGCATCGGAGAGCACGGGGGAGGGTTGTTCATCGGCAACGGGAACGGGAACGGCAGCGGCGGCGGGGTGGCTCCACCGAGCCGATATGAATCTCAAAAAAGAAGAGATTGGAACACTTTCTTACAATATTTGAAGAACCATAAGCCGCCACTGTGTTTAGCTCGATGCAGTGGTGCTCACGTGATCGAATTCTTGAAGTATTTGGATCAGTTCGGAAAAACGAAGGTCCATGCTTCCCCCTGCCCTTACTTCGGTCACCCAAATCCACCTGCCCCCTGCCCCTGCCCCCTCAAACAAGCTTGGGGTAGCCTCGACGCTTTGATCGGCCGCCTCCGTGCCGCTTACGAAGAGAACGGTGGCCGCCCCGAATCCAACCCATTTGCCGCACGTGCCGTCAGGATTTATCTCCGTGAGGTTCGCGAAGCTCAGGCTAAAGCCAGAGGAATTCCTTACGAGAAAAAGAAACGGAAAAGACCCGCCCCCACCGCCCCTCCGCCAGAGACTAGTACCTCCACCACCGCCACCGCCACCACCGGGGATAATCAGCCTGAAACAACCGCTGGTGGCGGTGGTGACGATCCCGCCGTTGCTCCTCCGCCGTCCACAACCGCCGCTTCCACCTCCGTATAGTCTCTCAATTACTTCTTCTTCTTCCTTTTTTTTTTTTTTAAAATATTTTTCCTTGAAATAGCATCTCATCATCTCTCTTAATTGTGATTATGAGTTTTATTTAATCATATAAATATTAAACCTATTAATTCTCATTAATCCGATCAATCAATATCTCAAATTAGATCTTCAATCACTCAAAAACCCCATTATTATCTTTTAATTTTTCAATTTCGTCTCCAATCAGCATCTTATCTCTATTCTATAATTCAAATCCTACCTTCATTTCAAGCTAATAATTAATTTTCCTCCCTTTTTAAAACTTTTTAAATATATACCATACTAGCTATACTATAAAGACTCAATGATAGCAAAACATATTAATTAATATAGAAACAAGCGAGGAAAACATTAAACAAATTATACAGGAATTTTTTAATTCAGACTAACAAATTAGCGAGTCTTGAAATGATTATAGTAAGTTAATTTTTTTGGGGTCTTTTTATAGAGTTGGTAGAAGTGATATTTATTATGTGGAGGCCACAACAAAGTAGGGATGGGTAGCATAGTAAGGGGAAAGAGGCTGCATAGAAAAGAAAAGAGTGAGACCCTCAAAATTGATGATTTTACATGTAAGTTTGAAACCAATTATACACATTATTTAAAATTAATTTAAGACGATCTGGCACTGGTCCTTAGGTTCTTTTATTTTGCATAAATGTTGAATCTGTGTCTTTGTTTATGACACAAAAAGAAACACGTGCGTTTCTCTTATGCAATATTTTTCCAGTTTCAGCTTCTCTTTTCCTTCAACCTCAGTTAATTTTGACCCCTCCTTTTACATACATTTTCAATTTCTAAGCTCAACATTCTTATTTCTTTTTCTTCTTTTGTTCTTTAGTTAATTTCTTCTGTCATTATAAAACTACAACATAGTTTCTTCTTTTTTTAAAAAAAAAAATAATAATAATAATAATTTATTTATAAGCTGATCAGTTGTCTTTATTTTAAGTTAACCACCATCCAAGACCAAGAGTGAAAACGACATGTCGCCAAACGATGCCTGCTTTTCCCATTTCTGTATGTATGTATGTATATGTATATACATACATACATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTATTTATTTATTGAAATTATAGAATAATTAATTATTGGAACTGGGGATTTTGGGAATAATAATGGGGGGAAGACCCACTGGCCATGCTCTCACACTCCAACCCATCTCGAAACTTCAATTTTTTCTTTTTTAAATTTAGACCCATTTGCTTTGTTTTATTTATAGATATATGTTTATAATAATAATAGATATAGCACCGAAATGATGATTGGTTGCATAATTTGGTTGATTTTTGTTTTTACCTTTTCTCACTTTTTCCTATGAAAACATCTTTTCATCATCGTCCTTCTCTGTCTCTATCTTTATTTTTGATGGGTTTCAACATTGTATGTTCTTTTATTTCTTTTCTGAAATTTCTTCAAACTTGATTTTCATTCAACGTACAACTCTCTGTCAGATTAATTTTTTTTTCTGAATTTAAAAGGATTGGTCAGGTTTTAATGATTAGAGATGACTATGTTAACTTACAATTTTCAAAACCCTAAAAATCTCTTTTCCATTCTAATTTCAAAATTGTCTAGGTAGGAATCACATCGGTTGGGCATAGTCAGATTTTTAATAAATTGCTATCCAAACTGATAGACATTTTCATTGCCTTCTTGCCTTCTCGCTCTTTGATTGACCGACTTTGTTTCTATTCAGAGAGAGAATTTATTTGTTTTACCCAAAAATTATTATTTTTTTGTGTAGGTTGGTCGGTGGATAATTTACCAAAAAACGTAGAAATGCATATTTAACTTGGAATGGGGGCTCTACGGGTCTATCTCGAATGAGCAATAAATCCTTGATTACACGAAAAATGAAGGCGTAGGAAACATTTTCTATTTTCTTTTTAACTTTTAGAAATTAGGAAGATCAAATTACATTTTATATATATTTAGTTGAGAATATATTAAAACATTGTTAAAAAGATAATAAGTAAGTAAATGAGTAATTTTGTAGGCCGAAAACTCGATCCCTGCAAATTCTCTACAAATCA

mRNA sequence

GGTGGTGCATCGGAGAGCACGGGGGAGGGTTGTTCATCGGCAACGGGAACGGGAACGGCAGCGGCGGCGGGGTGGCTCCACCGAGCCGATATGAATCTCAAAAAAGAAGAGATTGGAACACTTTCTTACAATATTTGAAGAACCATAAGCCGCCACTGTGTTTAGCTCGATGCAGTGGTGCTCACGTGATCGAATTCTTGAAGTATTTGGATCAGTTCGGAAAAACGAAGGTCCATGCTTCCCCCTGCCCTTACTTCGGTCACCCAAATCCACCTGCCCCCTGCCCCTGCCCCCTCAAACAAGCTTGGGGTAGCCTCGACGCTTTGATCGGCCGCCTCCGTGCCGCTTACGAAGAGAACGGTGGCCGCCCCGAATCCAACCCATTTGCCGCACGTGCCGTCAGGATTTATCTCCGTGAGGTTCGCGAAGCTCAGGCTAAAGCCAGAGGAATTCCTTACGAGAAAAAGAAACGGAAAAGACCCGCCCCCACCGCCCCTCCGCCAGAGACTAGTACCTCCACCACCGCCACCGCCACCACCGGGGATAATCAGCCTGAAACAACCGCTGGTGGCGGTGGTGACGATCCCGCCGTTGCTCCTCCGCCGTCCACAACCGCCGCTTCCACCTCCGTTGGTCGGTGGATAATTTACCAAAAAACGTAGAAATGCATATTTAACTTGGAATGGGGGCTCTACGGGTCTATCTCGAATGAGCAATAAATCCTTGATTACACGAAAAATGAAGGCGTAGGAAACATTTTCTATTTTCTTTTTAACTTTTAGAAATTAGGAAGATCAAATTACATTTTATATATATTTAGTTGAGAATATATTAAAACATTGTTAAAAAGATAATAAGTAAGTAAATGAGTAATTTTGTAGGCCGAAAACTCGATCCCTGCAAATTCTCTACAAATCA

Coding sequence (CDS)

ATGCAGTGGTGCTCACGTGATCGAATTCTTGAAGTATTTGGATCAGTTCGGAAAAACGAAGGTCCATGCTTCCCCCTGCCCTTACTTCGGTCACCCAAATCCACCTGCCCCCTGCCCCTGCCCCCTCAAACAAGCTTGGGGTAG

Protein sequence

MQWCSRDRILEVFGSVRKNEGPCFPLPLLRSPKSTCPLPLPPQTSLG
Homology
[Close]
BLAST of MELO.jh025854.1 vs. NCBI nr
Match: KAA0060022.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 7.22e-08
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MDSVSESGGGGASESTGEGCSSATGTGTAAAAG 33
          MDSVSESGGGGASESTGEGCSSATGTGTAAAAG
Sbjct: 1  MDSVSESGGGGASESTGEGCSSATGTGTAAAAG 33

[Close]
BLAST of MELO.jh025854.1 vs. NCBI nr
Match: XP_008457336.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 7.84e-08
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MDSVSESGGGGASESTGEGCSSATGTGTAAAAG 33
          MDSVSESGGGGASESTGEGCSSATGTGTAAAAG
Sbjct: 1  MDSVSESGGGGASESTGEGCSSATGTGTAAAAG 33

[Close]
BLAST of MELO.jh025854.1 vs. ExPASy TrEMBL
Match: A0A5A7UVV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00670 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.50e-08
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MDSVSESGGGGASESTGEGCSSATGTGTAAAAG 33
          MDSVSESGGGGASESTGEGCSSATGTGTAAAAG
Sbjct: 1  MDSVSESGGGGASESTGEGCSSATGTGTAAAAG 33

[Close]
BLAST of MELO.jh025854.1 vs. ExPASy TrEMBL
Match: A0A1S3C5Y5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo OX=3656 GN=LOC103497051 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.80e-08
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  MDSVSESGGGGASESTGEGCSSATGTGTAAAAG 33
          MDSVSESGGGGASESTGEGCSSATGTGTAAAAG
Sbjct: 1  MDSVSESGGGGASESTGEGCSSATGTGTAAAAG 33

The following BLAST results are available for this feature:
BLAST of MELO.jh025854.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060022.17.22e-08100.00protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucumis melo var. makuwa][more]
XP_008457336.17.84e-08100.00PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucumis melo][more]
BLAST of MELO.jh025854.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh025854.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UVV83.50e-08100.00Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo var. makuwa OX=1... [more]
A0A1S3C5Y53.80e-08100.00protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of MELO.jh025854.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh025854.1.t2MELO.jh025854.1.t2mRNA
MELO.jh025854.1.t1MELO.jh025854.1.t1mRNA