MELO.jh022727.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh022727.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr10: 12956415 .. 12956784 (-)
RNA-Seq Expression	MELO.jh022727.1
Synteny	MELO.jh022727.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCCAAAAACAAAATCACTCCTCCTCCTTCTCCTCCTAGCCAAAGACCTCCAAATGGGTCATTCTAAGATCATCAAGATGATTAGAATTAAAGACCTTCTTCTTCTACTTGCCCTCGTCATCTTCTTCGTTCTTGGTGTTGGAGTTTGCAACGCCGCCTGTCGTTTCCCGTGCCACAGCGTGGCGGTTGGCAGAGCTCAAGAACATGAAGAAATTGGAGGTGATTCATTGGATGATGATTCAAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTATTGGCCATTGAAGAAAAACTTCCATTTTCAGATCCATATATATATGAATATACAAAGTGTTGGGAGATTTGCAGACT

mRNA sequence

TCTCCCAAAAACAAAATCACTCCTCCTCCTTCTCCTCCTAGCCAAAGACCTCCAAATGGGTCATTCTAAGATCATCAAGATGATTAGAATTAAAGACCTTCTTCTTCTACTTGCCCTCGTCATCTTCTTCGTTCTTGGTGTTGGAGTTTGCAACGCCGCCTGTCGTTTCCCGTGCCACAGCGTGGCGGTTGGCAGAGCTCAAGAACATGAAGAAATTGGAGGTGATTCATTGGATGATGATTCAAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTATTGGCCATTGAAGAAAAACTTCCATTTTCAGATCCATATATATATGAATATACAAAGTGTTGGGAGATTTGCAGACT

Coding sequence (CDS)

ATGGGTCATTCTAAGATCATCAAGATGATTAGAATTAAAGACCTTCTTCTTCTACTTGCCCTCGTCATCTTCTTCGTTCTTGGTGTTGGAGTTTGCAACGCCGCCTGTCGTTTCCCGTGCCACAGCGTGGCGGTTGGCAGAGCTCAAGAACATGAAGAAATTGGAGGTGATTCATTGGATGATGATTCAAAGGACAATGATCCTTATAGAATGTATGGTGATGTTCCAAGCCCTGGTATTGGCCATTGA

Protein sequence

MGHSKIIKMIRIKDLLLLLALVIFFVLGVGVCNAACRFPCHSVAVGRAQEHEEIGGDSLDDDSKDNDPYRMYGDVPSPGIGH

Homology

[Close]

BLAST of MELO.jh022727.1 vs. NCBI nr
Match: KGN50727.1 (hypothetical protein Csa_005780 [Cucumis sativus])

HSP 1 Score: 145 bits (365), Expect = 2.52e-43
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MGHSKIIKMIRIKDLLLLLALVIFFVLGVGVCNAACRFPCHSVAVGRAQEHEEIGGDSLD 60
          MGHSKIIKMIRIK+LLLL ALVIFFV GVGVC++ACR PCH VA+GRAQEHEEIG  SLD
Sbjct: 1  MGHSKIIKMIRIKNLLLL-ALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLD 60

Query: 61 DDSKDNDPYRMYGDVPSPGIGH 82
          DDSKDNDPYRMYGDVPSPG+GH
Sbjct: 61 DDSKDNDPYRMYGDVPSPGVGH 81

[Close]

BLAST of MELO.jh022727.1 vs. NCBI nr
Match: KAG6599948.1 (hypothetical protein SDJN03_05181, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (255), Expect = 3.84e-26
Identity = 54/83 (65.06%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1   MGHSKIIKMIRIKDLLLLLALVIFFVLGVGVCNAACRFPCHSVAVGRAQEHEE-IGGDSL 60
           MGH  I   IRI+ LLLL   V  FVL   VCNAACR PC+ VAV RAQEH+E +   +L
Sbjct: 35  MGHPSI---IRIRALLLLALTVFVFVLAARVCNAACRPPCYGVAVTRAQEHDEDMEEGAL 94

Query: 61  DDDSKDNDPYRMYGDVPSPGIGH 82
           DD++KDNDPYRMYGDVPSPG+GH
Sbjct: 95  DDETKDNDPYRMYGDVPSPGVGH 114

[Close]

BLAST of MELO.jh022727.1 vs. ExPASy TrEMBL
Match: A0A0A0KQN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 1.22e-43
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MGHSKIIKMIRIKDLLLLLALVIFFVLGVGVCNAACRFPCHSVAVGRAQEHEEIGGDSLD 60
          MGHSKIIKMIRIK+LLLL ALVIFFV GVGVC++ACR PCH VA+GRAQEHEEIG  SLD
Sbjct: 1  MGHSKIIKMIRIKNLLLL-ALVIFFVFGVGVCSSACRLPCHRVALGRAQEHEEIGDGSLD 60

Query: 61 DDSKDNDPYRMYGDVPSPGIGH 82
          DDSKDNDPYRMYGDVPSPG+GH
Sbjct: 61 DDSKDNDPYRMYGDVPSPGVGH 81

The following BLAST results are available for this feature:

BLAST of MELO.jh022727.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50727.1	2.52e-43	86.59	hypothetical protein Csa_005780 [Cucumis sativus]	[more]
KAG6599948.1	3.84e-26	65.06	hypothetical protein SDJN03_05181, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MELO.jh022727.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh022727.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQN4	1.22e-43	86.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G220900 PE=4 SV=1	[more]

BLAST of MELO.jh022727.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh022727.1.t1	MELO.jh022727.1.t1	mRNA