MELO.jh022640.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh022640.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr10: 10710380 .. 10711167 (+)
RNA-Seq ExpressionMELO.jh022640.1
SyntenyMELO.jh022640.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATTCAATCGCCGACTGTGAGATGGGGGAACACTTGCAATGCTTCCTCCCTTATCTCCGAATTGTTTAGCTCTGGGAACAAGATCTCCATCGTTAAACTAAATGATGACAACTTTCTTCTGTGGAAATTTCAAGTTGTTACAGCATTGGAAGATTACGATTTAGAAAAATACCTTGATCCTCACTTAGAACCCCCATCTTAGTTCCTCAATGTTATAGCTGAAACTCCCCCCAGGCACCCCCGGTGTGTCTTTATTAAAAAATATTCAAACTCCAAACCCAAAATTCAAGAAGTGGAAATGCCAAGATCAATTAATTTCGTCCTGGTTGCTCGATTCGATGAATGAGGATATTCTCAACCAAATGCTCAACTACAACTCCACAAAGGATATATGGGCCAATCTTCATGGAATTTATTGTGTACTATGTCCTGCTCAGGTGATTCTATTCAAGAGTAAGCTTTAAAATATAAGAAAAAAGTCATGCCTTTGAAAGAATATTTAATGAAAATCCAACAATGTGTTGATGCTCTGGCTTTAGTCGATAAACCTGTATCCTCTAATGATCATATTTTATACATTCTTGCGGATTAGGACTAGAATATGAATCTATGATATCCGTTATTTATGCCCACACTGATTCTCCCTTTATACAAGACATTACTTCGCTATTACTTACTAAGGAATCTCGTATTGAGTGTACCATCAATGCAGAAAGCTCTCTACTATCAGCTAACTTGGCTACTCAAGGATTGAAAAAAGACACTAATCAATCAATTAAATAA

mRNA sequence

ATGAGCATTCAATCGCCGACTGTGAGATGGGGGAACACTTGCAATGCTTCCTCCCTTATCTCCGAATTGTTTAGCTCTGGGAACAAGATCTCCATCGTTAAACTAAATGATGACAACTTTCTTCTGTGGAAATTTCAAGTTGTTACAGCATTGGAAGATTACGATTTAGAAAAATACCTTGATCCTCACTTAGAACCCCCATCTTAGTTCCTCAATGTTATAGCTGAAACTCCCCCCAGGCACCCCCGGTGTGTCTTTATTAAAAAATATTCAAACTCCAAACCCAAAATTCAAGAAGTGGAAATGCCAAGATCAATTAATTTCGTCCTGGTTGCTCGATTCGATGAATGAGGATATTCTCAACCAAATGCTCAACTACAACTCCACAAAGGATATATGGGCCAATCTTCATGGAATTTATTGTGTACTATGTCCTGCTCAGGTGATTCTATTCAAGAGTAAGCTTTAAAATATAAGAAAAAAGTCATGCCTTTGAAAGAATATTTAATGAAAATCCAACAATGTGTTGATGCTCTGGCTTTAGTCGATAAACCTGTATCCTCTAATGATCATATTTTATACATTCTTGCGGATTAGGACTAGAATATGAATCTATGATATCCGTTATTTATGCCCACACTGATTCTCCCTTTATACAAGACATTACTTCGCTATTACTTACTAAGGAATCTCGTATTGAGTGTACCATCAATGCAGAAAGCTCTCTACTATCAGCTAACTTGGCTACTCAAGGATTGAAAAAAGACACTAATCAATCAATTAAATAA

Coding sequence (CDS)

ATGAGCATTCAATCGCCGACTGTGAGATGGGGGAACACTTGCAATGCTTCCTCCCTTATCTCCGAATTGTTTAGCTCTGGGAACAAGATCTCCATCGTTAAACTAAATGATGACAACTTTCTTCTGTGGAAATTTCAAGTTGTTACAGCATTGGAAGATTACGATTTAGAAAAATACCTTGATCCTCACTTAGAACCCCCATCTTAG

Protein sequence

MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALEDYDLEKYLDPHLEPPS
Homology
BLAST of MELO.jh022640.1 vs. NCBI nr
Match: KAA0032170.1 (uncharacterized protein E6C27_scaffold452G00930 [Cucumis melo var. makuwa] >TYK14415.1 uncharacterized protein E5676_scaffold186G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (263), Expect = 2.43e-28
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALED 53
          MSIQSPTVRWGNTCNASSLISELFSSGNKI IVKLNDDNFLLWKFQVVTALED
Sbjct: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKIFIVKLNDDNFLLWKFQVVTALED 53

BLAST of MELO.jh022640.1 vs. NCBI nr
Match: TYK03300.1 (uncharacterized protein E5676_scaffold298G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 2.21e-26
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 0

Query: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALEDYDLEKYL 60
          MS QS  +R GN  +ASSLIS++F+SGN ISIV LN+DNFLLWKFQVVT LE YDLEKYL
Sbjct: 1  MSSQSSIMRTGNADDASSLISKMFNSGNNISIVNLNNDNFLLWKFQVVTTLEGYDLEKYL 60

Query: 61 DPHLEPPS 68
          DPHLEP S
Sbjct: 61 DPHLEPLS 68

BLAST of MELO.jh022640.1 vs. NCBI nr
Match: KAA0066107.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK15146.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 3.17e-20
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALEDYDLEKYL 60
          M IQS T       +ASS I E+FSS NKISIV+LNDDNFLLW+FQVVTALE YDLEKYL
Sbjct: 1  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61 DPHLEPPS 68
          D  LEPPS
Sbjct: 61 DSSLEPPS 68

BLAST of MELO.jh022640.1 vs. NCBI nr
Match: XP_008465355.1 (PREDICTED: uncharacterized protein LOC103502987 isoform X2 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 5.69e-20
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALEDYDLEKYL 60
          M IQS T       +ASS I E+FSS NKISIV+LNDDNFLLW+FQVVTALE YDLEKYL
Sbjct: 1  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61 DPHLEPPS 68
          D  LEPPS
Sbjct: 61 DSSLEPPS 68

BLAST of MELO.jh022640.1 vs. NCBI nr
Match: XP_008465350.1 (PREDICTED: uncharacterized protein LOC103502987 isoform X1 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 6.28e-20
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALEDYDLEKYL 60
          M IQS T       +ASS I E+FSS NKISIV+LNDDNFLLW+FQVVTALE YDLEKYL
Sbjct: 1  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61 DPHLEPPS 68
          D  LEPPS
Sbjct: 61 DSSLEPPS 68

BLAST of MELO.jh022640.1 vs. ExPASy TrEMBL
Match: A0A5A7SN26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00680 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 1.18e-28
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALED 53
          MSIQSPTVRWGNTCNASSLISELFSSGNKI IVKLNDDNFLLWKFQVVTALED
Sbjct: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKIFIVKLNDDNFLLWKFQVVTALED 53

BLAST of MELO.jh022640.1 vs. ExPASy TrEMBL
Match: A0A5D3BW27 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001380 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 1.07e-26
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 0

Query: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALEDYDLEKYL 60
          MS QS  +R GN  +ASSLIS++F+SGN ISIV LN+DNFLLWKFQVVT LE YDLEKYL
Sbjct: 1  MSSQSSIMRTGNADDASSLISKMFNSGNNISIVNLNNDNFLLWKFQVVTTLEGYDLEKYL 60

Query: 61 DPHLEPPS 68
          DPHLEP S
Sbjct: 61 DPHLEPLS 68

BLAST of MELO.jh022640.1 vs. ExPASy TrEMBL
Match: A0A5A7VGA1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00100 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.53e-20
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALEDYDLEKYL 60
          M IQS T       +ASS I E+FSS NKISIV+LNDDNFLLW+FQVVTALE YDLEKYL
Sbjct: 1  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61 DPHLEPPS 68
          D  LEPPS
Sbjct: 61 DSSLEPPS 68

BLAST of MELO.jh022640.1 vs. ExPASy TrEMBL
Match: A0A1S3CQ70 (uncharacterized protein LOC103502987 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502987 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.76e-20
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALEDYDLEKYL 60
          M IQS T       +ASS I E+FSS NKISIV+LNDDNFLLW+FQVVTALE YDLEKYL
Sbjct: 1  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61 DPHLEPPS 68
          D  LEPPS
Sbjct: 61 DSSLEPPS 68

BLAST of MELO.jh022640.1 vs. ExPASy TrEMBL
Match: A0A1S3CQ60 (uncharacterized protein LOC103502987 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502987 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.04e-20
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 1  MSIQSPTVRWGNTCNASSLISELFSSGNKISIVKLNDDNFLLWKFQVVTALEDYDLEKYL 60
          M IQS T       +ASS I E+FSS NKISIV+LNDDNFLLW+FQVVTALE YDLEKYL
Sbjct: 1  MRIQSWTCNIEEHQDASSPIFEMFSSRNKISIVELNDDNFLLWRFQVVTALEGYDLEKYL 60

Query: 61 DPHLEPPS 68
          D  LEPPS
Sbjct: 61 DSSLEPPS 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0032170.12.43e-2898.11uncharacterized protein E6C27_scaffold452G00930 [Cucumis melo var. makuwa] >TYK1... [more]
TYK03300.12.21e-2675.00uncharacterized protein E5676_scaffold298G001380 [Cucumis melo var. makuwa][more]
KAA0066107.13.17e-2072.06Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
XP_008465355.15.69e-2072.06PREDICTED: uncharacterized protein LOC103502987 isoform X2 [Cucumis melo][more]
XP_008465350.16.28e-2072.06PREDICTED: uncharacterized protein LOC103502987 isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SN261.18e-2898.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BW271.07e-2675.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGA11.53e-2072.06Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A1S3CQ702.76e-2072.06uncharacterized protein LOC103502987 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CQ603.04e-2072.06uncharacterized protein LOC103502987 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh022640.1.t1MELO.jh022640.1.t1mRNA