MELO.jh021940.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh021940.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr10: 2686715 .. 2687451 (-)
RNA-Seq ExpressionMELO.jh021940.1
SyntenyMELO.jh021940.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATGAACATGGCGATTGTAAGGAACAATTAATCAATTCTATGGGCTCTGTTTCGAGTCATTTCCACCATTTTCTTCACTACTCTGAGAGGCTCTGTTTTTCTCCGTTTTTCCTCCCATGTATTTGTTATTATGCATCCAAACTCTCAGCACCCGCTTTCCTATTCCAATTTCTTTACAAAATTCCTCCACTAATCTTTCTTCACTTTTCCCAATTCTCCATCCCATTTTCTCCGAAAACAATTGCATCTTTTCCTTCTGCTCCCCGCTGAATTTCGTCCTCTTCCTCTTCCTCTGTTTCCGCCTCAATTCCTCCTCCTCCTCCGCTGCCGCTCCGGTGCTCAATGCCATCAACATATGGGGCCCGGAGAATTGAACTGGCGGTGGGATATGCGAAATCGGTAGAGGGATCGGTGAGGAAGGACTTTGCGATTTGATTCTGCTCGACCTCGGCGACGGCGGTGCACAAAGACGATATGGGTAGTAACGACGGTTAGGCCAAGGATCGTCCGATTCACGACGGTGGAAATTCCGATGACAACCACAAGCGGCGCAATTTAAAGAAGTGGGATCGGTGGGTGTAGAGGTAATGGAAGGCATAAACTCTCCGCAACCGTCGAGGGCATGGCCGCCGACAGCGGCGGCGTGATTCTTGAGACATTCTTTGTAAGAGATGAGCATAGAATTGGAATTTGAATTTGAGGTAAGCGTAATTAAGAGATGTGGGAAATTTGGAAA

mRNA sequence

AGATGAACATGGCGATTGTAAGGAACAATTAATCAATTCTATGGGCTCTGTTTCGAGTCATTTCCACCATTTTCTTCACTACTCTGAGAGGCTCTGTTTTTCTCCGTTTTTCCTCCCATGTATTTGTTATTATGCATCCAAACTCTCAGCACCCGCTTTCCTATTCCAATTTCTTTACAAAATTCCTCCACTAATCTTTCTTCACTTTTCCCAATTCTCCATCCCATTTTCTCCGAAAACAATTGCATCTTTTCCTTCTGCTCCCCGCTGAATTTCGTCCTCTTCCTCTTCCTCTGTTTCCGCCTCAATTCCTCCTCCTCCTCCGCTGCCGCTCCGGTGCTCAATGCCATCAACATATGGGGCCCGGAGAATTGAACTGGCGGTGGGATATGCGAAATCGGTAGAGGGATCGGTGAGGAAGGACTTTGCGATTTGATTCTGCTCGACCTCGGCGACGGCGGTGCACAAAGACGATATGGGTAGTAACGACGGTTAGGCCAAGGATCGTCCGATTCACGACGGTGGAAATTCCGATGACAACCACAAGCGGCGCAATTTAAAGAAGTGGGATCGGTGGGTGTAGAGGTAATGGAAGGCATAAACTCTCCGCAACCGTCGAGGGCATGGCCGCCGACAGCGGCGGCGTGATTCTTGAGACATTCTTTGTAAGAGATGAGCATAGAATTGGAATTTGAATTTGAGGTAAGCGTAATTAAGAGATGTGGGAAATTTGGAAA

Coding sequence (CDS)

ATGTATTTGTTATTATGCATCCAAACTCTCAGCACCCGCTTTCCTATTCCAATTTCTTTACAAAATTCCTCCACTAATCTTTCTTCACTTTTCCCAATTCTCCATCCCATTTTCTCCGAAAACAATTGCATCTTTTCCTTCTGCTCCCCGCTGAATTTCGTCCTCTTCCTCTTCCTCTGTTTCCGCCTCAATTCCTCCTCCTCCTCCGCTGCCGCTCCGGTGCTCAATGCCATCAACATATGGGGCCCGGAGAATTGA

Protein sequence

MYLLLCIQTLSTRFPIPISLQNSSTNLSSLFPILHPIFSENNCIFSFCSPLNFVLFLFLCFRLNSSSSSAAAPVLNAINIWGPEN
Homology
[Close]
BLAST of MELO.jh021940.1 vs. NCBI nr
Match: BAT05606.1 (Os08g0438501 [Oryza sativa Japonica Group])

HSP 1 Score: 52.0 bits (123), Expect = 8.04e-06
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 3  LLLCIQTLSTRFPIPISLQNSSTNLSSLFPILHPIFSENNCIFSFCSPLNFV 54
          LLLCIQTL T  P PIS Q+SST  SS F   HP  S++ CI  FCS LN V
Sbjct: 33 LLLCIQTLKTPLPTPISRQHSSTTASSRFWRRHPSRSDSACIRCFCSGLNLV 84

[Close]
BLAST of MELO.jh021940.1 vs. NCBI nr
Match: KAB8108659.1 (hypothetical protein EE612_044533 [Oryza sativa])

HSP 1 Score: 52.0 bits (123), Expect = 8.17e-06
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 3  LLLCIQTLSTRFPIPISLQNSSTNLSSLFPILHPIFSENNCIFSFCSPLNFV 54
          LLLCIQTL T  P PIS Q+SST  SS F   HP  S++ CI  FCS LN V
Sbjct: 34 LLLCIQTLKTPLPTPISRQHSSTTASSRFWRRHPSRSDSACIRCFCSGLNLV 85

[Close]
BLAST of MELO.jh021940.1 vs. NCBI nr
Match: KAG0523749.1 (hypothetical protein BDA96_07G149500 [Sorghum bicolor])

HSP 1 Score: 48.1 bits (113), Expect = 1.97e-04
Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 0 

Query: 3  LLLCIQTLSTRFPIPISLQNSSTNLSSLFPILHPIFSENNCIFSFCSPLNFVLFLFLCFR 62
          LLLCIQTL T    PIS Q+SST  SS F    P  S++ CI  FCS LN V   FL   
Sbjct: 24 LLLCIQTLKTPLVTPISWQHSSTTASSRFCSRQPSRSDSACIRCFCSGLNLVRNRFL--- 83

Query: 63 LNSSSSSAAAP 73
              +++AAAP
Sbjct: 84 ----AAAAAAP 87

[Close]
BLAST of MELO.jh021940.1 vs. NCBI nr
Match: KAG8662701.1 (hypothetical protein MANES_01G135701v8 [Manihot esculenta])

HSP 1 Score: 47.0 bits (110), Expect = 4.29e-04
Identity = 31/56 (55.36%), Postives = 34/56 (60.71%), Query Frame = 0 

Query: 3  LLLCIQTLSTRFPIPISLQNSSTNLSSLFPILHPIFSENNCIFSFCSPLNFVLFLF 58
          LLLCIQT+ T    PI  QN   + SS F I HP  S N+ I SF S LNFVL LF
Sbjct: 4  LLLCIQTMGTFLFTPIGEQNCRISCSSCFWIFHPNLSANSIILSFYSWLNFVLNLF 59

[Close]
BLAST of MELO.jh021940.1 vs. ExPASy TrEMBL
Match: A0A0P0XGE3 (Os08g0438501 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0438501 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.89e-06
Identity = 31/52 (59.62%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 3  LLLCIQTLSTRFPIPISLQNSSTNLSSLFPILHPIFSENNCIFSFCSPLNFV 54
          LLLCIQTL T  P PIS Q+SST  SS F   HP  S++ CI  FCS LN V
Sbjct: 33 LLLCIQTLKTPLPTPISRQHSSTTASSRFWRRHPSRSDSACIRCFCSGLNLV 84

The following BLAST results are available for this feature:
BLAST of MELO.jh021940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BAT05606.18.04e-0659.62Os08g0438501 [Oryza sativa Japonica Group][more]
KAB8108659.18.17e-0659.62hypothetical protein EE612_044533 [Oryza sativa][more]
KAG0523749.11.97e-0449.30hypothetical protein BDA96_07G149500 [Sorghum bicolor][more]
KAG8662701.14.29e-0455.36hypothetical protein MANES_01G135701v8 [Manihot esculenta][more]
BLAST of MELO.jh021940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh021940.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0P0XGE33.89e-0659.62Os08g0438501 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0438501 PE... [more]
BLAST of MELO.jh021940.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh021940.1.t1MELO.jh021940.1.t1mRNA