MELO.jh021671.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh021671.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptiontransformer-2 protein homolog alpha-like
Locationchr10: 1130455 .. 1131684 (+)
RNA-Seq ExpressionMELO.jh021671.1
SyntenyMELO.jh021671.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGTTCCATTGACAGAGAGAAATAGAGCAACAAAAAATGGGAAGAAGAAGAGAGATTGCATTCATTTTGGTAATTCTTTATTCGTCTATGATGACTTCCTTTGCTTTCACACAACTCTTCACAATAGGTTCAATTCCTCTCCACTCTTTTTTTTTTTCTTCTTCATTTTTAAAAATACTTATTGTCTGGATAGGATTATACGGTTCGTTCAAATGAGTTTTTCTTTTTCTTTTTAAATTTTCATATATTATAAATTTATAAGCTTAAGAAAATGCTTAATGTATGATATTTTTAAGCTCAGAGCATGTTTGGTAGCTAGGTGTTTTATTGTTTTTGAAAAGGCATGTAGGTTCAATATAACTATTATATTTTTATGTTTTTTTAAACAAGAAACTCATTTTTAAAATTATGAAGAAAAAAAAACTTCCAAAATACACATTTTGTTTTAAAAAACAGAAAACAAAAATGGATAACCGAACATATATGGTTTTCGCTTTTAATAAACAAAAATTAAAAAAAAAAAAAGAACAAAATCAACCGACTAAAATAAAAATCAATGTGTCATATTTCATCATCTTTTTTTTATCAAAATCCATGTGACAATTATCATGCCGTGATAATGTTTGTACTCTTTTTTAATAATTATATTTGTATTTTGTAGATTCTAAACAGCAATTAATTGTTAGAGAATACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCAGGCCATCATGGAAAGCATAAGCGCAACCTTGGAAATCGTCATAATATCTATATAGAGTTTATAGTAGTTGGAGTTTCCATCTCTACTGCACTTCTGTGTAGATTTATATAATACCCAAACATATTCCAAACCTTTGATAAAGTGTAATACACTTAGAATCTTTTGTTATGCAATTTATAAGTTGCCATATACGGTCGTCACAAGGTTAATCGTGTGAGACCGACGTGCACTATTGATGTTTGGATTGAGGAATATGTGTTAGAAGACTAGAAGCTATTTCAAGGAATTTTCTCACGTTTATTTATTTATTAAAATATTATTTTGCTCTGTATAATTTAATGTTTGTTCGATTTTAATTTCTATATTTTTAATTATTCAATTTTAATATTTCTTTTTGTTATTTGTAACATTTTACCACAAACTTTGAAAACATATCGACATCATTTATTTCTTTCCATGAAA

mRNA sequence

TAGTTCCATTGACAGAGAGAAATAGAGCAACAAAAAATGGGAAGAAGAAGAGAGATTGCATTCATTTTGGTAATTCTTTATTCGTCTATGATGACTTCCTTTGCTTTCACACAACTCTTCACAATAGATTCTAAACAGCAATTAATTGTTAGAGAATACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCAGGCCATCATGGAAAGCATAAGCGCAACCTTGGAAATCGTCATAATATCTATATAGAGTTTATAGTAGTTGGAGTTTCCATCTCTACTGCACTTCTGTGTAGATTTATATAATACCCAAACATATTCCAAACCTTTGATAAAGTGTAATACACTTAGAATCTTTTGTTATGCAATTTATAAGTTGCCATATACGGTCGTCACAAGGTTAATCGTGTGAGACCGACGTGCACTATTGATGTTTGGATTGAGGAATATGTGTTAGAAGACTAGAAGCTATTTCAAGGAATTTTCTCACGTTTATTTATTTATTAAAATATTATTTTGCTCTGTATAATTTAATGTTTGTTCGATTTTAATTTCTATATTTTTAATTATTCAATTTTAATATTTCTTTTTGTTATTTGTAACATTTTACCACAAACTTTGAAAACATATCGACATCATTTATTTCTTTCCATGAAA

Coding sequence (CDS)

ATGGGAAGAAGAAGAGAGATTGCATTCATTTTGGTAATTCTTTATTCGTCTATGATGACTTCCTTTGCTTTCACACAACTCTTCACAATAGATTCTAAACAGCAATTAATTGTTAGAGAATACAATAATTCAAGATTTGTTGAACGTCGAGGGGGAGGTAGGGGAGTGATCCCAATATATGTGGCTGGCGCTTCATCAGGCCATCATGGAAAGCATAAGCGCAACCTTGGAAATCGTCATAATATCTATATAGAGTTTATAGTAGTTGGAGTTTCCATCTCTACTGCACTTCTGTGTAGATTTATATAA

Protein sequence

MGRRREIAFILVILYSSMMTSFAFTQLFTIDSKQQLIVREYNNSRFVERRGGGRGVIPIYVAGASSGHHGKHKRNLGNRHNIYIEFIVVGVSISTALLCRFI
Homology
BLAST of MELO.jh021671.1 vs. NCBI nr
Match: KGN52709.2 (hypothetical protein Csa_008507 [Cucumis sativus])

HSP 1 Score: 161 bits (407), Expect = 4.37e-49
Identity = 86/103 (83.50%), Postives = 92/103 (89.32%), Query Frame = 0

Query: 1   MGRRR-EIAFILVILYSSMMTSFAFTQLFTIDSKQQLIVREYNNSRFVERRGGGRGVIPI 60
           MGRRR E+AFILVIL SSMM SFAFTQLFTIDSKQ + VRE+NNSRFVERRGGGRGVIPI
Sbjct: 1   MGRRRGEMAFILVILCSSMMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPI 60

Query: 61  YVAGASSGHHGKHKRNLGNRHNIYIEFIVVGVSISTALLCRFI 102
           YVAGASSG HGKH  +LGNR N YIEFI++GVSIS ALLCRFI
Sbjct: 61  YVAGASSGRHGKHSHSLGNRPNNYIEFIIIGVSISIALLCRFI 103

BLAST of MELO.jh021671.1 vs. NCBI nr
Match: XP_008446753.1 (PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo])

HSP 1 Score: 53.9 bits (128), Expect = 1.31e-06
Identity = 48/120 (40.00%), Postives = 60/120 (50.00%), Query Frame = 0

Query: 1   MGRRR---EIAFILVILYSSMMTSFAFTQLFTIDS--KQQLIVREYNNSRF-VERRGGGR 60
           MGRRR   EIA IL+++YSSM+ SFAF QLF  DS   Q+    E +  R+ +E R G  
Sbjct: 1   MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYT 60

Query: 61  GVIPIYVA---------------GASSGHHGKHKRNLGNRHNIYIEFIVVGVSISTALLC 99
             IPI+                 G  +G  G H RN       Y++FI   VSIS A LC
Sbjct: 61  NGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRN-------YMKFIAAAVSISVAYLC 113

BLAST of MELO.jh021671.1 vs. ExPASy TrEMBL
Match: A0A0A0KTE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 7.32e-42
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 0

Query: 18  MMTSFAFTQLFTIDSKQQLIVREYNNSRFVERRGGGRGVIPIYVAGASSGHHGKHKRNLG 77
           MM SFAFTQLFTIDSKQ + VRE+NNSRFVERRGGGRGVIPIYVAGASSG HGKH  +LG
Sbjct: 1   MMASFAFTQLFTIDSKQHITVREHNNSRFVERRGGGRGVIPIYVAGASSGRHGKHSHSLG 60

Query: 78  NRHNIYIEFIVVGVSISTALLCRFI 102
           NR N YIEFI++GVSIS ALLCRFI
Sbjct: 61  NRPNNYIEFIIIGVSISIALLCRFI 85

BLAST of MELO.jh021671.1 vs. ExPASy TrEMBL
Match: A0A1S3BFU5 (transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.36e-07
Identity = 48/120 (40.00%), Postives = 60/120 (50.00%), Query Frame = 0

Query: 1   MGRRR---EIAFILVILYSSMMTSFAFTQLFTIDS--KQQLIVREYNNSRF-VERRGGGR 60
           MGRRR   EIA IL+++YSSM+ SFAF QLF  DS   Q+    E +  R+ +E R G  
Sbjct: 1   MGRRRRRTEIALILILIYSSMVHSFAFKQLFVTDSIKHQESEHMEKHGRRYNIEGRHGYT 60

Query: 61  GVIPIYVA---------------GASSGHHGKHKRNLGNRHNIYIEFIVVGVSISTALLC 99
             IPI+                 G  +G  G H RN       Y++FI   VSIS A LC
Sbjct: 61  NGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRN-------YMKFIAAAVSISVAYLC 113

BLAST of MELO.jh021671.1 vs. ExPASy TrEMBL
Match: A0A0A0KWM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613630 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.83e-04
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 0

Query: 4   RREIAFILVILYSSMMT-SFAFTQLFTIDS----KQQLIVREYNNSRFVERRGGGRGVIP 63
           RR+IA IL+++YSSM+  S AF QLF  D+    + + + ++Y     VE R G    IP
Sbjct: 3   RRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIP 62

Query: 64  IYVA-----GASSGHHGKHKRNLGNRHNIYIEFIVVGVSISTALLC 99
            ++A     G   G  G+     G      ++FI   VSIS A LC
Sbjct: 63  THIAITRGGGRGGGGGGRGNGAAGIHDQNCMKFIAAAVSISVAYLC 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52709.24.37e-4983.50hypothetical protein Csa_008507 [Cucumis sativus][more]
XP_008446753.11.31e-0640.00PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KTE67.32e-4283.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1[more]
A0A1S3BFU56.36e-0740.00transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385... [more]
A0A0A0KWM33.83e-0435.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613630 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh021671.1.t1MELO.jh021671.1.t1mRNA