MELO.jh020459.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh020459.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Transposon Tf2-1 polyprotein isoform X1
Location	chr09: 14671761 .. 14672479 (-)
RNA-Seq Expression	MELO.jh020459.1
Synteny	MELO.jh020459.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAAATGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAATCTGAGATCCTTAACAAAGAGCCTCCAGCGGTTAAGAATTCAAGCCGAAGAAAATCAACAATTGTTGTTATAATGCGTTGAAACCATGGTGAAAAAAAAATCGATAGTGAGTGAACAAATAGTGAGTGAAAGAATCACATCGAATCTACCAGTGATGAAGAGTATAGTTGAAGGAGGAAGTACACCTATGAAAAGAATCGAGACCGAAGAACAAAGGAAGGAAATAGAAACTGAAAAGAAGGTAGGTGAAGAACAAACAAAGTAGATAGGAATTGAAGAAGATATAAGTGATCGAAACAAATTCAAGAATGTAGAGTTACAGAGGTTTAGCGGCAAGAAGTTCGATTAATTTATTTTTTGGACCGAACGGAATTTCCAAAAATATGAACCGATCGATTCTGCGAGAGTAAACGTTGCTGTAATCAGATTCGATGGAACCACATTAGATTAGTTTCGGTCGAAGGATGAACACGATGCATTCAAGGATTGGTTGAGATTAAAACAAGGGGTTGTTACTTCCTCTCCAATCAGTGAGGGAAGAACTTAGCCGCGGGCGATTCTTAGCAAACAAACCGAAAATCGTGGAAGATCGGCGAGAATTACCGGCAAGACCCAAAACGA

mRNA sequence

ATGGAGCAAATGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAATCTGAGATCCTTAACAAAGAGCCTCCAGCGGTTAAGAATTCAAGCCGAAGAAAATCAACAATTGTTGTTATAATGCGTTGAAACCATGGTGAAAAAAAAATCGATAGTGAGTGAACAAATAGTGAGTGAAAGAATCACATCGAATCTACCAGTGATGAAGAGTATAGTTGAAGGAGGAAGTACACCTATGAAAAGAATCGAGACCGAAGAACAAAGGAAGGAAATAGAAACTGAAAAGAAGGTAGGTGAAGAACAAACAAAGTAGATAGGAATTGAAGAAGATATAAGTGATCGAAACAAATTCAAGAATGTAGAGTTACAGAGGTTTAGCGGCAAGAAGTTCGATTAATTTATTTTTTGGACCGAACGGAATTTCCAAAAATATGAACCGATCGATTCTGCGAGAGTAAACGTTGCTGTAATCAGATTCGATGGAACCACATTAGATTAGTTTCGGTCGAAGGATGAACACGATGCATTCAAGGATTGGTTGAGATTAAAACAAGGGGTTGTTACTTCCTCTCCAATCAGTGAGGGAAGAACTTAGCCGCGGGCGATTCTTAGCAAACAAACCGAAAATCGTGGAAGATCGGCGAGAATTACCGGCAAGACCCAAAACGA

Coding sequence (CDS)

ATGGTGAAAAAAAAATCGATAGTGAGTGAACAAATAGTGAGTGAAAGAATCACATCGAATCTACCAGTGATGAAGAGTATAGTTGAAGGAGGAAGTACACCTATGAAAAGAATCGAGACCGAAGAACAAAGGAAGGAAATAGAAACTGAAAAGAAGGTAGGTGAAGAACAAACAAAGTAG

Protein sequence

MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK

Homology

[Close]

BLAST of MELO.jh020459.1 vs. NCBI nr
Match: KAA0059497.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.10e-24
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK 59
          MVK+KSIVSEQ VSERIT+NLPVMKSIVEGGSTPMKRIETEEQRKEIETE+KVGEEQTK
Sbjct: 1  MVKEKSIVSEQTVSERITTNLPVMKSIVEGGSTPMKRIETEEQRKEIETEEKVGEEQTK 59

[Close]

BLAST of MELO.jh020459.1 vs. NCBI nr
Match: KAA0036966.1 (histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 8.42e-24
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK 59
           MVK+KSIVSEQ VSERIT+NLPVMKSIVEGGSTPMKRIETEEQRKEIETE+KVGEEQTK
Sbjct: 62  MVKEKSIVSEQTVSERITTNLPVMKSIVEGGSTPMKRIETEEQRKEIETEEKVGEEQTK 120

[Close]

BLAST of MELO.jh020459.1 vs. NCBI nr
Match: TYK29306.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.27e-22
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK 59
           MVK+KSIVSEQ VSERIT NLPVMKSIVEGGSTPMKRI+TEEQRKEIETE+KVGEEQTK
Sbjct: 62  MVKEKSIVSEQTVSERITMNLPVMKSIVEGGSTPMKRIKTEEQRKEIETEEKVGEEQTK 120

[Close]

BLAST of MELO.jh020459.1 vs. NCBI nr
Match: KAA0040878.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.50e-22
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK 59
           MVK+KSIVSEQ VSERIT+NLPVMKSIVEGGSTPMKRIETEEQRKEI TE+KVGEEQTK
Sbjct: 62  MVKEKSIVSEQTVSERITTNLPVMKSIVEGGSTPMKRIETEEQRKEIGTEEKVGEEQTK 120

[Close]

BLAST of MELO.jh020459.1 vs. NCBI nr
Match: KAA0052318.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 2.21e-22
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK 59
           MVK+K IVSEQ VSERIT+NLPVMKSIVEGGSTPMKRIETEEQRKEIETE+KVGEEQTK
Sbjct: 62  MVKEKLIVSEQTVSERITTNLPVMKSIVEGGSTPMKRIETEEQRKEIETEEKVGEEQTK 120

[Close]

BLAST of MELO.jh020459.1 vs. ExPASy TrEMBL
Match: A0A5A7UXZ8 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10760G00010 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.32e-25
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK 59
          MVK+KSIVSEQ VSERIT+NLPVMKSIVEGGSTPMKRIETEEQRKEIETE+KVGEEQTK
Sbjct: 1  MVKEKSIVSEQTVSERITTNLPVMKSIVEGGSTPMKRIETEEQRKEIETEEKVGEEQTK 59

[Close]

BLAST of MELO.jh020459.1 vs. ExPASy TrEMBL
Match: A0A5A7T4B7 (Histone-lysine N-methyltransferase ASHR1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00470 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.08e-24
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK 59
           MVK+KSIVSEQ VSERIT+NLPVMKSIVEGGSTPMKRIETEEQRKEIETE+KVGEEQTK
Sbjct: 62  MVKEKSIVSEQTVSERITTNLPVMKSIVEGGSTPMKRIETEEQRKEIETEEKVGEEQTK 120

[Close]

BLAST of MELO.jh020459.1 vs. ExPASy TrEMBL
Match: A0A5D3E073 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00110 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.17e-23
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK 59
           MVK+KSIVSEQ VSERIT NLPVMKSIVEGGSTPMKRI+TEEQRKEIETE+KVGEEQTK
Sbjct: 62  MVKEKSIVSEQTVSERITMNLPVMKSIVEGGSTPMKRIKTEEQRKEIETEEKVGEEQTK 120

[Close]

BLAST of MELO.jh020459.1 vs. ExPASy TrEMBL
Match: A0A5A7TD50 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00350 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.26e-23
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK 59
           MVK+KSIVSEQ VSERIT+NLPVMKSIVEGGSTPMKRIETEEQRKEI TE+KVGEEQTK
Sbjct: 62  MVKEKSIVSEQTVSERITTNLPVMKSIVEGGSTPMKRIETEEQRKEIGTEEKVGEEQTK 120

[Close]

BLAST of MELO.jh020459.1 vs. ExPASy TrEMBL
Match: A0A5A7UAS4 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001550 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.07e-22
Identity = 54/59 (91.53%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 1   MVKKKSIVSEQIVSERITSNLPVMKSIVEGGSTPMKRIETEEQRKEIETEKKVGEEQTK 59
           MVK+K IVSEQ VSERIT+NLPVMKSIVEGGSTPMKRIETEEQRKEIETE+KVGEEQTK
Sbjct: 62  MVKEKLIVSEQTVSERITTNLPVMKSIVEGGSTPMKRIETEEQRKEIETEEKVGEEQTK 120

The following BLAST results are available for this feature:

BLAST of MELO.jh020459.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059497.1	1.10e-24	93.22	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0036966.1	8.42e-24	93.22	histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo var. makuwa]	[more]
TYK29306.1	1.27e-22	91.53	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0040878.1	1.50e-22	91.53	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0052318.1	2.21e-22	91.53	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh020459.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh020459.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UXZ8	5.32e-25	93.22	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7T4B7	4.08e-24	93.22	Histone-lysine N-methyltransferase ASHR1 isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A5D3E073	6.17e-23	91.53	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TD50	7.26e-23	91.53	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7UAS4	1.07e-22	91.53	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of MELO.jh020459.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 37..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh020459.1.t1	MELO.jh020459.1.t1	mRNA