MELO.jh020423.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh020423.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	30S ribosomal protein S11, chloroplastic
Location	chr09: 13811281 .. 13811809 (-)
RNA-Seq Expression	MELO.jh020423.1
Synteny	MELO.jh020423.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCTAAAGGCCACCCACAAAATACACATAAAAATAAATTAAATGATCCATTTTAACATGAAATTGATATATCCATATATTTCTGACTTAGATTTATGAGATGATAAAGTAGGGCAAAACCCATACCAGAAATAAGTTCACGTAGAAATGGACGTATTAAATCACGTAAAAGTACGTGCAGTCAAAGGGCACTATTCATGTTCGAGCAAGTTTAAATAATACAATTGTGACTGTTACAAATGTGTGGAGTCGGGTAATTTCTTGGTCCTCCGCTAGTACGTATGGATATATTCAAAGTACAAGAAGAGGGCATCACCTGTCGCTCAAATGCAGAAAATGTTATTTGGGCAGTAGTGATCAAGGGAAGCAACAAGCTGAAGTTATGATAAAGGGCCTCGATCTCGAAAGATATGCAACATTAAGAGCTATTGGGAGAAGCGGTATACTATCAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGACGTAGGCCCTCTAAAAATCGAAGTGTGTAAAAATAAACA

mRNA sequence

CCCCTAAAGGCCACCCACAAAATACACATAAAAATAAATTAAATGATCCATTTTAACATGAAATTGATATATCCATATATTTCTGACTTAGATTTATGAGATGATAAAGTAGGGCAAAACCCATACCAGAAATAAGTTCACGTAGAAATGGACGTATTAAATCACGTAAAAGTACGTGCAGTCAAAGGGCACTATTCATGTTCGAGCAAGTTTAAATAATACAATTGTGACTGTTACAAATGTGTGGAGTCGGGTAATTTCTTGGTCCTCCGCTAGTACGTATGGATATATTCAAAGTACAAGAAGAGGGCATCACCTGTCGCTCAAATGCAGAAAATGTTATTTGGGCAGTAGTGATCAAGGGAAGCAACAAGCTGAAGTTATGATAAAGGGCCTCGATCTCGAAAGATATGCAACATTAAGAGCTATTGGGAGAAGCGGTATACTATCAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGACGTAGGCCCTCTAAAAATCGAAGTGTGTAAAAATAAACA

Coding sequence (CDS)

ATGATAAAGGGCCTCGATCTCGAAAGATATGCAACATTAAGAGCTATTGGGAGAAGCGGTATACTATCAAGTTTCATACGGGATGTAACCCCTATGCCACATAATGGACGTAGGCCCTCTAAAAATCGAAGTGTGTAA

Protein sequence

MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV

Homology

[Close]

BLAST of MELO.jh020423.1 vs. NCBI nr
Match: KAG5568933.1 (hypothetical protein H5410_064056 [Solanum commersonii])

HSP 1 Score: 68.2 bits (165), Expect = 6.72e-13
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 45
           MIKG DLER ATL AI RSGIL +F+RDVTPMPHNG RP K R V
Sbjct: 94  MIKGPDLERDATLGAIRRSGILLTFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. NCBI nr
Match: YP_009486743.1 (ribosomal protein S11 [Piliostigma thonningii] >YP_009486778.1 ribosomal protein S11 [Piliostigma thonningii] >AWB12966.1 ribosomal protein S11 [Piliostigma thonningii] >AWB13001.1 ribosomal protein S11 [Piliostigma thonningii])

HSP 1 Score: 67.8 bits (164), Expect = 9.50e-13
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 45
           MIKGL L R A +RAIGRSGIL  FIRD+TPMPHNG RP K R V
Sbjct: 94  MIKGLGLGRDAAVRAIGRSGILFKFIRDITPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. NCBI nr
Match: TYH16100.1 (hypothetical protein ES288_A05G091800v1 [Gossypium darwinii])

HSP 1 Score: 67.4 bits (163), Expect = 1.34e-12
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 45
           MIKGL L R A LRAI RSGIL SF+RDVTPMPHNG RP K R V
Sbjct: 94  MIKGLGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. NCBI nr
Match: AMP18863.1 (ribosomal protein S11, partial [Ziziphus jujuba])

HSP 1 Score: 67.4 bits (163), Expect = 1.37e-12
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 45
           MIKG  L RYA LRAI RSGIL +F+RDVTPMPHNG RP K R V
Sbjct: 94  MIKGPGLGRYAALRAIRRSGILLTFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. NCBI nr
Match: CDP57010.1 (SSU ribosomal protein S11p (S14e) [Staphylococcus aureus])

HSP 1 Score: 64.7 bits (156), Expect = 1.66e-12
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1  MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 45
          MIKG  L R A LRAI RSGIL SF+RDVTPMPHNG RP K R V
Sbjct: 1  MIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 45

[Close]

BLAST of MELO.jh020423.1 vs. ExPASy Swiss-Prot
Match: Q4VZK2 (30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-10
Identity = 34/45 (75.56%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 46
           MIKG  L R A LRAI RSGIL SFIRDVTPMPHNG RP K R V
Sbjct: 94  MIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. ExPASy Swiss-Prot
Match: Q09WY4 (30S ribosomal protein S11, chloroplastic OS=Morus indica OX=248361 GN=rps11 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-10
Identity = 34/45 (75.56%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 46
           MIKG  L R A LRAI RSGIL SFIRDVTPMPHNG RP K R V
Sbjct: 94  MIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. ExPASy Swiss-Prot
Match: Q7YJU5 (30S ribosomal protein S11, chloroplastic OS=Calycanthus floridus var. glaucus OX=212734 GN=rps11 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-10
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 46
           MIKG  L R A LRAI RSGIL SF+RDVTPMPHNG RP K R V
Sbjct: 94  MIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. ExPASy Swiss-Prot
Match: B1A968 (30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-10
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 46
           MIKG  L R A LRAI RSGIL SF+RDVTPMPHNG RP K R V
Sbjct: 94  MIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. ExPASy Swiss-Prot
Match: A8SED6 (30S ribosomal protein S11, chloroplastic OS=Ceratophyllum demersum OX=4428 GN=rps11 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-10
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 46
           MIKG  L R A LRAI RSGIL SF+RDVTPMPHNG RP K R V
Sbjct: 94  MIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. ExPASy TrEMBL
Match: A0A2S0SU26 (30S ribosomal protein S11, chloroplastic OS=Piliostigma thonningii OX=653098 GN=rps11 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.60e-13
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 45
           MIKGL L R A +RAIGRSGIL  FIRD+TPMPHNG RP K R V
Sbjct: 94  MIKGLGLGRDAAVRAIGRSGILFKFIRDITPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. ExPASy TrEMBL
Match: A0A5D2GEK0 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G091800v1 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.51e-13
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 45
           MIKGL L R A LRAI RSGIL SF+RDVTPMPHNG RP K R V
Sbjct: 94  MIKGLGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. ExPASy TrEMBL
Match: A0A1C8FNE5 (Ribosomal protein S11 (Fragment) OS=Ziziphus jujuba OX=326968 GN=rps11 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.65e-13
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 45
           MIKG  L RYA LRAI RSGIL +F+RDVTPMPHNG RP K R V
Sbjct: 94  MIKGPGLGRYAALRAIRRSGILLTFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. ExPASy TrEMBL
Match: H6T3C9 (Ribosomal protein S11 (Fragment) OS=Lomandra longifolia OX=34201 GN=rps11 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.30e-12
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 45
           MIKG  L R ATLRAI RSGIL SF+RDVTPMPHNG RP K R V
Sbjct: 94  MIKGPGLGRDATLRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. ExPASy TrEMBL
Match: A0A411L8D8 (30S ribosomal protein S11, chloroplastic OS=Symmeria paniculata OX=655514 GN=rps11 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.30e-12
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 1   MIKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 45
           MIKG  L R A LRAI RSGIL SF+RDVTPMPHNG RPSK R V
Sbjct: 94  MIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPSKKRRV 138

[Close]

BLAST of MELO.jh020423.1 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-10
Identity = 32/44 (72.73%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 2   IKGLDLERYATLRAIGRSGILSSFIRDVTPMPHNGRRPSKNRSV 46
           IKG  L R A LRAI RSGIL SF+RDVTPMPHNG RP K R V
Sbjct: 95  IKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 138

The following BLAST results are available for this feature:

BLAST of MELO.jh020423.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5568933.1	6.72e-13	75.56	hypothetical protein H5410_064056 [Solanum commersonii]	[more]
YP_009486743.1	9.50e-13	73.33	ribosomal protein S11 [Piliostigma thonningii] >YP_009486778.1 ribosomal protein...	[more]
TYH16100.1	1.34e-12	75.56	hypothetical protein ES288_A05G091800v1 [Gossypium darwinii]	[more]
AMP18863.1	1.37e-12	73.33	ribosomal protein S11, partial [Ziziphus jujuba]	[more]
CDP57010.1	1.66e-12	73.33	SSU ribosomal protein S11p (S14e) [Staphylococcus aureus]	[more]

BLAST of MELO.jh020423.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK2	4.0e-10	75.56	30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=...	[more]
Q09WY4	4.0e-10	75.56	30S ribosomal protein S11, chloroplastic OS=Morus indica OX=248361 GN=rps11 PE=3...	[more]
Q7YJU5	5.2e-10	73.33	30S ribosomal protein S11, chloroplastic OS=Calycanthus floridus var. glaucus OX...	[more]
B1A968	5.2e-10	73.33	30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 ...	[more]
A8SED6	5.2e-10	73.33	30S ribosomal protein S11, chloroplastic OS=Ceratophyllum demersum OX=4428 GN=rp...	[more]

BLAST of MELO.jh020423.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2S0SU26	4.60e-13	73.33	30S ribosomal protein S11, chloroplastic OS=Piliostigma thonningii OX=653098 GN=...	[more]
A0A5D2GEK0	6.51e-13	75.56	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G091800v1 PE=...	[more]
A0A1C8FNE5	6.65e-13	73.33	Ribosomal protein S11 (Fragment) OS=Ziziphus jujuba OX=326968 GN=rps11 PE=3 SV=1	[more]
H6T3C9	1.30e-12	75.56	Ribosomal protein S11 (Fragment) OS=Lomandra longifolia OX=34201 GN=rps11 PE=3 S...	[more]
A0A411L8D8	1.30e-12	75.56	30S ribosomal protein S11, chloroplastic OS=Symmeria paniculata OX=655514 GN=rps...	[more]

BLAST of MELO.jh020423.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00750.1	1.4e-10	72.73	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 1..44 e-value: 1.2E-8 score: 37.0
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 2..43 e-value: 2.2E-10 score: 40.9
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 2..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh020423.1.t1	MELO.jh020423.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome